Wall clock time and date at job start Mon Mar 30 2020 06:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50693 * 109.47199 * 2 1 4 4 C 1.33642 * 122.75174 * 85.02453 * 3 2 1 5 5 S 1.76198 * 107.92617 * 179.76351 * 4 3 2 6 6 C 1.70976 * 90.28183 * 0.27952 * 5 4 3 7 7 C 1.50703 * 124.91574 * 179.97438 * 6 5 4 8 8 H 1.09004 * 109.49869 * 179.63403 * 7 6 5 9 9 C 1.53041 * 109.49892 * 299.69663 * 7 6 5 10 10 C 1.53040 * 109.53852 * 181.34485 * 9 7 6 11 11 C 1.53191 * 109.31682 * 298.64077 * 10 9 7 12 12 N 1.46928 * 108.77557 * 54.62949 * 11 10 9 13 13 C 1.36939 * 120.62907 * 126.36988 * 12 11 10 14 14 H 1.08004 * 120.00193 * 332.50885 * 13 12 11 15 15 C 1.38805 * 120.00142 * 152.50281 * 13 12 11 16 16 N 1.31627 * 120.00040 * 335.03066 * 15 13 12 17 17 Si 1.86805 * 120.00321 * 155.03039 * 15 13 12 18 18 H 1.48497 * 109.46928 * 59.99734 * 17 15 13 19 19 H 1.48500 * 109.46770 * 300.00395 * 17 15 13 20 20 H 1.48492 * 109.47261 * 180.02562 * 17 15 13 21 21 C 1.46922 * 118.74004 * 306.64952 * 12 11 10 22 22 N 1.29029 * 110.16970 * 359.71772 * 6 5 4 23 23 H 1.09002 * 109.46958 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47231 * 299.99706 * 1 2 3 25 25 H 1.08999 * 109.47251 * 60.00244 * 1 2 3 26 26 H 1.09007 * 109.47155 * 240.00313 * 2 1 3 27 27 H 1.08998 * 109.47090 * 120.00284 * 2 1 3 28 28 H 1.07996 * 126.03325 * 359.97438 * 4 3 2 29 29 H 1.09001 * 109.45764 * 61.32891 * 9 7 6 30 30 H 1.08995 * 109.45079 * 301.36514 * 9 7 6 31 31 H 1.08996 * 109.49733 * 178.68595 * 10 9 7 32 32 H 1.09001 * 109.51944 * 58.60753 * 10 9 7 33 33 H 1.09004 * 109.58295 * 294.85011 * 11 10 9 34 34 H 1.09000 * 109.70795 * 174.49196 * 11 10 9 35 35 H 0.96999 * 119.99790 * 354.25710 * 16 15 13 36 36 H 1.08997 * 109.58703 * 173.14589 * 21 12 11 37 37 H 1.09000 * 109.58443 * 293.56442 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.1814 2.1349 1.1197 5 16 2.7926 3.7254 0.6712 6 6 2.7790 3.2749 -0.9781 7 6 3.2004 4.1649 -2.1189 8 1 3.0978 3.6238 -3.0596 9 6 2.3141 5.4122 -2.1480 10 6 2.7192 6.3006 -3.3264 11 6 4.1744 6.7454 -3.1488 12 7 5.0154 5.5533 -2.9747 13 6 6.1085 5.3479 -3.7736 14 1 6.1334 5.7606 -4.7713 15 6 7.1846 4.6095 -3.3009 16 7 7.4057 4.5232 -2.0062 17 14 8.3191 3.7381 -4.5022 18 1 8.9398 4.7362 -5.4097 19 1 7.5371 2.7612 -5.3018 20 1 9.3817 3.0237 -3.7502 21 6 4.6577 4.5827 -1.9314 22 7 2.3610 2.0607 -1.1042 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 1.9685 1.7957 2.1227 29 1 2.4359 5.9660 -1.2170 30 1 1.2716 5.1142 -2.2594 31 1 2.0724 7.1773 -3.3603 32 1 2.6210 5.7399 -4.2559 33 1 4.2568 7.3825 -2.2682 34 1 4.5003 7.2970 -4.0307 35 1 6.8686 5.0417 -1.3869 36 1 5.3008 3.7063 -2.0116 37 1 4.7804 5.0398 -0.9495 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195379305.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:15 Heat of formation + Delta-G solvation = 25.939218 kcal Electronic energy + Delta-G solvation = -18290.320022 eV Core-core repulsion = 15579.379590 eV Total energy + Delta-G solvation = -2710.940432 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.05913 -39.45968 -35.66808 -34.58960 -32.77911 -31.62444 -29.82117 -27.15147 -26.43041 -24.68793 -23.86768 -22.53334 -21.22667 -20.30129 -19.33983 -18.58811 -16.69396 -16.35640 -16.19251 -15.76146 -15.40575 -15.21724 -15.16430 -14.89364 -14.61223 -14.04415 -13.94351 -13.52658 -13.39834 -12.95928 -12.82186 -12.54651 -12.30505 -12.13320 -11.95745 -11.87963 -11.84291 -11.79177 -11.59597 -11.27463 -10.63086 -10.50424 -10.37150 -9.66205 -8.97807 -8.29058 -5.44133 -0.27950 0.41259 0.81919 1.55217 1.63266 1.79021 1.81523 2.61317 2.92112 3.23073 3.53027 3.84202 3.87730 3.98177 4.09995 4.19141 4.29198 4.40190 4.41509 4.43711 4.56503 4.64660 4.65268 4.79503 4.95848 5.01032 5.03960 5.06375 5.10196 5.14788 5.18148 5.22214 5.38012 5.44854 5.81616 6.34967 6.81143 7.00522 7.72231 8.16905 8.96346 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.020132 B = 0.006100 C = 0.005354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.503330 B = 4589.334704 C = 5228.694262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.048 4.048 3 C 0.050 3.950 4 C -0.263 4.263 5 S 0.134 5.866 6 C 0.052 3.948 7 C -0.026 4.026 8 H 0.072 0.928 9 C -0.094 4.094 10 C -0.122 4.122 11 C 0.138 3.862 12 N -0.615 5.615 13 C -0.359 4.359 14 H 0.055 0.945 15 C -0.072 4.072 16 N -0.940 5.940 17 Si 1.109 2.891 18 H -0.270 1.270 19 H -0.284 1.284 20 H -0.291 1.291 21 C 0.178 3.822 22 N -0.504 5.504 23 H 0.081 0.919 24 H 0.063 0.937 25 H 0.038 0.962 26 H 0.068 0.932 27 H 0.102 0.898 28 H 0.209 0.791 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.054 0.946 33 H 0.023 0.977 34 H 0.056 0.944 35 H 0.254 0.746 36 H 0.038 0.962 37 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.672 -3.814 6.205 16.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.088 4.088 3 C -0.082 4.082 4 C -0.402 4.402 5 S 0.390 5.610 6 C -0.226 4.226 7 C -0.050 4.050 8 H 0.091 0.909 9 C -0.132 4.132 10 C -0.161 4.161 11 C 0.013 3.987 12 N -0.339 5.339 13 C -0.488 4.488 14 H 0.073 0.927 15 C -0.269 4.269 16 N -0.581 5.581 17 Si 0.934 3.066 18 H -0.195 1.195 19 H -0.211 1.211 20 H -0.217 1.217 21 C 0.050 3.950 22 N -0.220 5.220 23 H 0.100 0.900 24 H 0.082 0.918 25 H 0.058 0.942 26 H 0.087 0.913 27 H 0.120 0.880 28 H 0.225 0.775 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.114 0.886 32 H 0.073 0.927 33 H 0.041 0.959 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -13.097 -4.099 6.083 15.012 hybrid contribution -1.157 0.267 0.028 1.188 sum -14.254 -3.832 6.111 15.976 Atomic orbital electron populations 1.21681 0.93053 1.03006 1.01735 1.20240 0.97125 0.87546 1.03927 1.20791 1.01158 0.99798 0.86472 1.27170 1.11300 0.96684 1.04999 1.83823 1.59501 1.15421 1.02262 1.27007 1.01682 0.94716 0.99208 1.20280 0.97128 0.94270 0.93356 0.90935 1.21481 0.98277 0.93860 0.99625 1.21898 0.96683 0.99925 0.97562 1.21162 0.90680 0.88095 0.98738 1.44312 1.29086 1.20342 1.40182 1.20232 0.95834 1.37100 0.95648 0.92731 1.27156 0.98332 1.01565 0.99869 1.70904 1.40155 1.43967 1.03082 0.82936 0.74354 0.76108 0.73217 1.19538 1.21057 1.21729 1.20622 0.91451 0.92482 0.90433 1.66171 1.15464 1.06955 1.33386 0.89966 0.91751 0.94246 0.91319 0.87983 0.77458 0.91493 0.90591 0.88553 0.92677 0.95934 0.92587 0.93584 0.94329 0.96873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.89 71.98 0.71 -1.74 16 2 C -0.05 -1.07 6.35 29.85 0.19 -0.88 16 3 C 0.05 1.47 5.99 41.52 0.25 1.72 16 4 C -0.26 -6.82 11.14 66.78 0.74 -6.07 16 5 S 0.13 4.11 22.44 -56.49 -1.27 2.84 16 6 C 0.05 1.92 6.04 88.52 0.53 2.46 16 7 C -0.03 -1.07 2.75 -11.61 -0.03 -1.10 16 8 H 0.07 3.22 8.14 -2.38 -0.02 3.20 16 9 C -0.09 -3.06 5.06 30.62 0.15 -2.91 16 10 C -0.12 -3.97 6.08 30.67 0.19 -3.79 16 11 C 0.14 5.67 6.52 86.36 0.56 6.23 16 12 N -0.62 -31.45 2.86 -699.94 -2.00 -33.45 16 13 C -0.36 -20.45 9.49 84.03 0.80 -19.65 16 14 H 0.05 3.08 7.94 -2.91 -0.02 3.06 16 15 C -0.07 -4.22 4.69 84.86 0.40 -3.82 16 16 N -0.94 -58.38 12.41 21.65 0.27 -58.11 16 17 Si 1.11 52.21 29.99 68.60 2.06 54.27 16 18 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 19 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 20 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 21 C 0.18 8.68 3.90 86.22 0.34 9.02 16 22 N -0.50 -18.80 10.53 -179.40 -1.89 -20.69 16 23 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 27 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.21 3.66 8.06 -2.91 -0.02 3.64 16 29 H 0.07 2.08 7.99 -2.39 -0.02 2.06 16 30 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 34 H 0.06 2.28 7.93 -2.39 -0.02 2.26 16 35 H 0.25 16.04 6.71 -92.71 -0.62 15.42 16 36 H 0.04 2.21 6.30 -2.39 -0.02 2.19 16 37 H 0.01 0.66 7.47 -2.39 -0.02 0.64 16 Total: -1.00 -69.09 311.26 3.19 -65.91 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: 1.19 Total: 9.75 kcal Atomic # 6 Polarization: -25.35 SS G_CDS: 4.83 Total: -20.52 kcal Atomic # 7 Polarization: -108.63 SS G_CDS: -3.62 Total: -112.26 kcal Atomic # 14 Polarization: 52.21 SS G_CDS: 2.06 Total: 54.27 kcal Atomic # 16 Polarization: 4.11 SS G_CDS: -1.27 Total: 2.84 kcal Total: -69.09 3.19 -65.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195379305.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.846 kcal (2) G-P(sol) polarization free energy of solvation -69.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds