Wall clock time and date at job start Mon Mar 30 2020 06:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29027 * 124.91746 * 2 1 4 4 C 1.31776 * 117.12229 * 179.97438 * 3 2 1 5 5 C 1.50698 * 122.74833 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.47025 * 305.02691 * 5 4 3 7 7 N 1.46910 * 109.47185 * 180.02562 * 6 5 4 8 8 C 1.46895 * 110.99971 * 180.02562 * 7 6 5 9 9 C 1.53003 * 109.47038 * 174.87619 * 8 7 6 10 10 C 1.50696 * 115.54453 * 296.30160 * 9 8 7 11 11 H 1.08001 * 120.00294 * 95.20676 * 10 9 8 12 12 C 1.37877 * 119.99957 * 274.92366 * 10 9 8 13 13 N 1.31514 * 119.99940 * 355.42608 * 12 10 9 14 14 Si 1.86797 * 119.99963 * 175.42038 * 12 10 9 15 15 H 1.48502 * 109.47311 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47232 * 120.00635 * 14 12 10 17 17 H 1.48500 * 109.47387 * 240.00519 * 14 12 10 18 18 C 1.52992 * 117.50019 * 81.97289 * 9 8 7 19 19 C 1.52997 * 117.49882 * 150.63170 * 9 8 7 20 20 C 1.33643 * 114.50569 * 0.23637 * 4 3 2 21 21 S 1.70978 * 124.91500 * 179.97438 * 2 1 3 22 22 H 1.08998 * 109.47185 * 89.99668 * 1 2 3 23 23 H 1.09001 * 109.47122 * 209.99670 * 1 2 3 24 24 H 1.09000 * 109.46863 * 329.99998 * 1 2 3 25 25 H 1.09003 * 109.47235 * 185.02527 * 5 4 3 26 26 H 1.09006 * 109.47397 * 65.02629 * 5 4 3 27 27 H 1.08991 * 109.46989 * 60.00176 * 6 5 4 28 28 H 1.09002 * 109.47305 * 299.99510 * 6 5 4 29 29 H 1.00901 * 110.99734 * 56.04065 * 7 6 5 30 30 H 1.08996 * 109.47777 * 54.86957 * 8 7 6 31 31 H 1.09010 * 109.46633 * 294.86997 * 8 7 6 32 32 H 0.97010 * 119.99605 * 179.97438 * 13 12 10 33 33 H 1.08998 * 117.49867 * 215.00457 * 18 9 8 34 34 H 1.09002 * 117.49985 * 0.02562 * 18 9 8 35 35 H 1.09005 * 117.50012 * 359.97438 * 19 9 8 36 36 H 1.09000 * 117.49705 * 144.96683 * 19 9 8 37 37 H 1.07999 * 126.04267 * 179.76911 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8793 0.0005 5 6 4.5308 2.0244 0.0000 6 6 4.2334 2.9494 -1.1820 7 7 5.1888 4.0654 -1.1829 8 6 4.9328 4.9766 -2.3063 9 6 5.8606 6.1887 -2.2015 10 6 5.6571 7.0599 -0.9889 11 1 6.2639 6.9100 -0.1081 12 6 4.7002 8.0525 -1.0059 13 7 4.0276 8.2985 -2.1089 14 14 4.3593 9.0477 0.5377 15 1 5.2437 8.5787 1.6345 16 1 4.6236 10.4840 0.2691 17 1 2.9397 8.8718 0.9365 18 6 7.2887 6.0327 -2.7277 19 6 6.2745 6.8762 -3.5041 20 6 3.9355 -0.4007 -0.0040 21 16 2.4857 -1.4020 0.0006 22 1 -0.3633 0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 5.5449 1.6351 -0.0894 26 1 4.4370 2.5833 0.9312 27 1 3.2194 3.3387 -1.0925 28 1 4.3273 2.3906 -2.1132 29 1 6.1394 3.7276 -1.2001 30 1 3.8953 5.3094 -2.2751 31 1 5.1194 4.4563 -3.2458 32 1 3.3541 8.9966 -2.1207 33 1 8.0811 6.5603 -2.1969 34 1 7.5672 5.0667 -3.1490 35 1 5.8861 6.4648 -4.4358 36 1 6.3991 7.9589 -3.4841 37 1 4.9545 -0.7582 -0.0080 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226388608.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:30 Heat of formation + Delta-G solvation = 60.996288 kcal Electronic energy + Delta-G solvation = -17368.479171 eV Core-core repulsion = 14659.058928 eV Total energy + Delta-G solvation = -2709.420244 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.99108 -37.03330 -34.98160 -32.75768 -31.73857 -29.78431 -28.12875 -25.65887 -24.52821 -22.79998 -21.66946 -20.85762 -19.76948 -18.91102 -17.50399 -16.14769 -15.45702 -15.33516 -14.80993 -14.40838 -14.15241 -13.89581 -13.49309 -13.28074 -12.99597 -12.74179 -12.62922 -12.29814 -11.91959 -11.55146 -11.22542 -11.10355 -10.84124 -10.66638 -10.56298 -10.35311 -10.07424 -9.66546 -9.49638 -9.29087 -8.83241 -8.72818 -8.25865 -7.96397 -7.48965 -5.87087 -3.89009 0.62450 1.26175 1.62644 2.75443 3.39526 3.47418 3.52535 3.97703 4.54967 4.72938 4.91141 5.12485 5.18631 5.24875 5.30262 5.42880 5.52811 5.58636 5.66818 5.68717 5.82197 6.14153 6.21798 6.34605 6.41352 6.48255 6.56892 6.71623 6.81608 6.96868 7.22188 7.58554 7.63679 7.73192 8.01080 8.05553 8.23446 8.64022 9.10147 9.73967 11.22282 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.023049 B = 0.003995 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.500279 B = 7006.385772 C = 7637.059008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.053 3.947 3 N -0.463 5.463 4 C 0.086 3.914 5 C -0.044 4.044 6 C 0.071 3.929 7 N -0.669 5.669 8 C 0.109 3.891 9 C 0.049 3.951 10 C -0.466 4.466 11 H 0.059 0.941 12 C 0.066 3.934 13 N -0.887 5.887 14 Si 0.889 3.111 15 H -0.273 1.273 16 H -0.288 1.288 17 H -0.285 1.285 18 C -0.217 4.217 19 C -0.153 4.153 20 C -0.264 4.264 21 S 0.092 5.908 22 H 0.086 0.914 23 H 0.079 0.921 24 H 0.091 0.909 25 H 0.076 0.924 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.013 0.987 29 H 0.329 0.671 30 H 0.072 0.928 31 H -0.006 1.006 32 H 0.256 0.744 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.084 0.916 37 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.809 -19.343 2.798 19.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.226 4.226 3 N -0.178 5.178 4 C -0.046 4.046 5 C -0.084 4.084 6 C -0.060 4.060 7 N -0.298 5.298 8 C -0.019 4.019 9 C 0.048 3.952 10 C -0.504 4.504 11 H 0.077 0.923 12 C -0.136 4.136 13 N -0.525 5.525 14 Si 0.717 3.283 15 H -0.198 1.198 16 H -0.215 1.215 17 H -0.212 1.212 18 C -0.254 4.254 19 C -0.191 4.191 20 C -0.403 4.403 21 S 0.346 5.654 22 H 0.105 0.895 23 H 0.098 0.902 24 H 0.109 0.891 25 H 0.094 0.906 26 H 0.111 0.889 27 H 0.096 0.904 28 H 0.031 0.969 29 H 0.145 0.855 30 H 0.090 0.910 31 H 0.012 0.988 32 H 0.065 0.935 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.103 0.897 37 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -4.794 -19.414 3.180 20.248 hybrid contribution 0.700 0.669 -0.071 0.971 sum -4.094 -18.745 3.109 19.437 Atomic orbital electron populations 1.20456 0.85223 1.04193 1.03961 1.27099 1.01790 0.90688 1.03038 1.66113 1.04714 1.31278 1.15693 1.20402 0.90132 0.94335 0.99748 1.20232 0.94705 0.92006 1.01499 1.21793 0.98649 0.91223 0.94295 1.60247 1.05543 1.16245 1.47811 1.21517 1.01339 0.91791 0.87301 1.18844 0.88771 0.93585 0.93993 1.20333 1.18494 1.13680 0.97890 0.92276 1.24941 0.96121 0.96851 0.95642 1.70033 1.24633 1.31990 1.25890 0.86592 0.78128 0.79559 0.84015 1.19765 1.21462 1.21160 1.22991 0.95515 0.99595 1.07345 1.22490 1.03119 0.98263 0.95241 1.26792 1.02832 0.95600 1.15029 1.83829 0.98602 1.13447 1.69547 0.89541 0.90228 0.89077 0.90580 0.88916 0.90432 0.96894 0.85475 0.90984 0.98758 0.93455 0.90578 0.92343 0.92378 0.89730 0.80685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 10.46 36.01 0.38 -0.26 16 2 C 0.05 0.62 7.39 -13.45 -0.10 0.52 16 3 N -0.46 -6.89 10.34 -8.06 -0.08 -6.97 16 4 C 0.09 1.20 6.08 -84.23 -0.51 0.68 16 5 C -0.04 -0.64 5.97 -27.88 -0.17 -0.80 16 6 C 0.07 1.23 5.58 -3.82 -0.02 1.21 16 7 N -0.67 -13.41 6.35 -113.77 -0.72 -14.13 16 8 C 0.11 2.51 5.51 -3.83 -0.02 2.49 16 9 C 0.05 1.22 1.64 -155.67 -0.25 0.97 16 10 C -0.47 -12.97 8.71 -34.44 -0.30 -13.27 16 11 H 0.06 1.67 7.82 -52.49 -0.41 1.26 16 12 C 0.07 1.86 5.43 -17.82 -0.10 1.76 16 13 N -0.89 -25.82 12.65 55.43 0.70 -25.12 16 14 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 15 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 17 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 18 C -0.22 -4.82 9.96 -26.70 -0.27 -5.09 16 19 C -0.15 -3.71 9.15 -26.70 -0.24 -3.96 16 20 C -0.26 -3.01 11.07 29.12 0.32 -2.69 16 21 S 0.09 0.91 23.18 -107.50 -2.49 -1.58 16 22 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.08 0.93 8.03 -51.93 -0.42 0.51 16 26 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 27 H 0.08 1.51 8.07 -51.93 -0.42 1.09 16 28 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.33 6.02 8.79 -39.29 -0.35 5.68 16 30 H 0.07 1.86 8.13 -51.93 -0.42 1.44 16 31 H -0.01 -0.12 8.10 -51.92 -0.42 -0.54 16 32 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 33 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.08 2.21 8.14 -51.93 -0.42 1.78 16 37 H 0.18 1.57 8.06 -52.49 -0.42 1.14 16 LS Contribution 328.92 15.07 4.96 4.96 Total: -1.00 -30.76 328.92 -9.74 -40.50 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -5.80 Total: 3.83 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: -1.28 Total: -18.45 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: -0.10 Total: -46.21 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -2.49 Total: -1.58 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.76 -9.74 -40.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226388608.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.500 kcal (2) G-P(sol) polarization free energy of solvation -30.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds