Wall clock time and date at job start Mon Mar 30 2020 06:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29027 * 124.91746 * 2 1 4 4 C 1.31776 * 117.12229 * 179.97438 * 3 2 1 5 5 C 1.50698 * 122.74833 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.47025 * 305.02691 * 5 4 3 7 7 N 1.46910 * 109.47185 * 180.02562 * 6 5 4 8 8 C 1.46895 * 110.99971 * 180.02562 * 7 6 5 9 9 C 1.53003 * 109.47038 * 174.87619 * 8 7 6 10 10 C 1.50696 * 115.54453 * 296.30160 * 9 8 7 11 11 H 1.08001 * 120.00294 * 95.20676 * 10 9 8 12 12 C 1.37877 * 119.99957 * 274.92366 * 10 9 8 13 13 N 1.31514 * 119.99940 * 355.42608 * 12 10 9 14 14 Si 1.86797 * 119.99963 * 175.42038 * 12 10 9 15 15 H 1.48502 * 109.47311 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47232 * 120.00635 * 14 12 10 17 17 H 1.48500 * 109.47387 * 240.00519 * 14 12 10 18 18 C 1.52992 * 117.50019 * 81.97289 * 9 8 7 19 19 C 1.52997 * 117.49882 * 150.63170 * 9 8 7 20 20 C 1.33643 * 114.50569 * 0.23637 * 4 3 2 21 21 S 1.70978 * 124.91500 * 179.97438 * 2 1 3 22 22 H 1.08998 * 109.47185 * 89.99668 * 1 2 3 23 23 H 1.09001 * 109.47122 * 209.99670 * 1 2 3 24 24 H 1.09000 * 109.46863 * 329.99998 * 1 2 3 25 25 H 1.09003 * 109.47235 * 185.02527 * 5 4 3 26 26 H 1.09006 * 109.47397 * 65.02629 * 5 4 3 27 27 H 1.08991 * 109.46989 * 60.00176 * 6 5 4 28 28 H 1.09002 * 109.47305 * 299.99510 * 6 5 4 29 29 H 1.00901 * 110.99734 * 56.04065 * 7 6 5 30 30 H 1.08996 * 109.47777 * 54.86957 * 8 7 6 31 31 H 1.09010 * 109.46633 * 294.86997 * 8 7 6 32 32 H 0.97010 * 119.99605 * 179.97438 * 13 12 10 33 33 H 1.08998 * 117.49867 * 215.00457 * 18 9 8 34 34 H 1.09002 * 117.49985 * 0.02562 * 18 9 8 35 35 H 1.09005 * 117.50012 * 359.97438 * 19 9 8 36 36 H 1.09000 * 117.49705 * 144.96683 * 19 9 8 37 37 H 1.07999 * 126.04267 * 179.76911 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8793 0.0005 5 6 4.5308 2.0244 0.0000 6 6 4.2334 2.9494 -1.1820 7 7 5.1888 4.0654 -1.1829 8 6 4.9328 4.9766 -2.3063 9 6 5.8606 6.1887 -2.2015 10 6 5.6571 7.0599 -0.9889 11 1 6.2639 6.9100 -0.1081 12 6 4.7002 8.0525 -1.0059 13 7 4.0276 8.2985 -2.1089 14 14 4.3593 9.0477 0.5377 15 1 5.2437 8.5787 1.6345 16 1 4.6236 10.4840 0.2691 17 1 2.9397 8.8718 0.9365 18 6 7.2887 6.0327 -2.7277 19 6 6.2745 6.8762 -3.5041 20 6 3.9355 -0.4007 -0.0040 21 16 2.4857 -1.4020 0.0006 22 1 -0.3633 0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 5.5449 1.6351 -0.0894 26 1 4.4370 2.5833 0.9312 27 1 3.2194 3.3387 -1.0925 28 1 4.3273 2.3906 -2.1132 29 1 6.1394 3.7276 -1.2001 30 1 3.8953 5.3094 -2.2751 31 1 5.1194 4.4563 -3.2458 32 1 3.3541 8.9966 -2.1207 33 1 8.0811 6.5603 -2.1969 34 1 7.5672 5.0667 -3.1490 35 1 5.8861 6.4648 -4.4358 36 1 6.3991 7.9589 -3.4841 37 1 4.9545 -0.7582 -0.0080 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226388608.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:30 Heat of formation + Delta-G solvation = 41.584714 kcal Electronic energy + Delta-G solvation = -17369.320920 eV Core-core repulsion = 14659.058928 eV Total energy + Delta-G solvation = -2710.261993 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.92613 -38.84985 -36.48863 -33.96474 -33.69678 -30.92427 -29.07961 -27.65108 -26.15650 -23.97039 -23.04803 -22.62112 -20.92520 -20.61374 -18.47531 -18.02304 -16.93931 -16.43780 -16.42362 -15.87891 -15.54831 -15.28657 -14.97510 -14.46558 -14.31295 -13.94870 -13.83067 -13.50988 -13.10182 -13.01178 -12.84252 -12.74414 -12.55334 -12.48165 -12.25863 -11.97829 -11.89268 -11.21364 -10.86891 -10.55631 -10.35606 -10.32173 -9.90446 -9.59393 -9.09998 -8.02422 -6.09141 -0.23163 0.45563 0.76198 1.41122 1.44330 1.54890 1.79634 2.48500 3.13338 3.27610 3.32848 3.66556 3.99695 4.12576 4.28560 4.34057 4.41738 4.48735 4.55787 4.61947 4.64751 4.65515 4.71031 4.80502 4.95115 5.01695 5.07095 5.12183 5.17211 5.29135 5.31778 5.69045 5.72251 5.88350 6.30845 6.51434 6.76879 6.86014 6.94974 7.56179 9.06388 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.023049 B = 0.003995 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.500279 B = 7006.385772 C = 7637.059008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.034 3.966 3 N -0.511 5.511 4 C 0.055 3.945 5 C -0.033 4.033 6 C 0.081 3.919 7 N -0.678 5.678 8 C 0.124 3.876 9 C 0.020 3.980 10 C -0.476 4.476 11 H 0.049 0.951 12 C 0.018 3.982 13 N -0.915 5.915 14 Si 0.945 3.055 15 H -0.268 1.268 16 H -0.283 1.283 17 H -0.287 1.287 18 C -0.185 4.185 19 C -0.162 4.162 20 C -0.262 4.262 21 S 0.154 5.846 22 H 0.096 0.904 23 H 0.107 0.893 24 H 0.082 0.918 25 H 0.102 0.898 26 H 0.075 0.925 27 H 0.046 0.954 28 H 0.020 0.980 29 H 0.342 0.658 30 H 0.032 0.968 31 H 0.008 0.992 32 H 0.255 0.745 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.133 -21.713 3.261 22.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.244 4.244 3 N -0.227 5.227 4 C -0.076 4.076 5 C -0.074 4.074 6 C -0.049 4.049 7 N -0.309 5.309 8 C -0.005 4.005 9 C 0.020 3.980 10 C -0.515 4.515 11 H 0.067 0.933 12 C -0.180 4.180 13 N -0.555 5.555 14 Si 0.772 3.228 15 H -0.193 1.193 16 H -0.209 1.209 17 H -0.213 1.213 18 C -0.222 4.222 19 C -0.200 4.200 20 C -0.401 4.401 21 S 0.409 5.591 22 H 0.114 0.886 23 H 0.125 0.875 24 H 0.101 0.899 25 H 0.120 0.880 26 H 0.093 0.907 27 H 0.065 0.935 28 H 0.038 0.962 29 H 0.160 0.840 30 H 0.051 0.949 31 H 0.026 0.974 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.109 0.891 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -4.109 -21.801 3.651 22.483 hybrid contribution 0.480 1.301 -0.220 1.404 sum -3.629 -20.500 3.431 21.099 Atomic orbital electron populations 1.20614 0.83330 1.05138 1.04869 1.27646 1.03265 0.91192 1.02299 1.66105 1.05594 1.33430 1.17620 1.20323 0.89999 0.95000 1.02325 1.20074 0.96519 0.91761 0.99012 1.21666 0.96360 0.90742 0.96148 1.60115 1.06862 1.17218 1.46680 1.21163 0.98506 0.91904 0.88957 1.18941 0.91385 0.94338 0.93358 1.20583 1.18167 1.14100 0.98604 0.93266 1.25606 0.96210 0.98078 0.98104 1.70136 1.25221 1.32646 1.27453 0.85700 0.77675 0.78394 0.81007 1.19253 1.20871 1.21349 1.22978 0.93820 1.00310 1.05108 1.22389 1.04871 0.97110 0.95629 1.27150 1.04878 0.95195 1.12862 1.83575 0.96561 1.11152 1.67852 0.88553 0.87486 0.89940 0.87965 0.90659 0.93522 0.96206 0.83978 0.94891 0.97373 0.93617 0.90504 0.89135 0.91325 0.92325 0.78198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.19 10.46 71.24 0.75 -0.45 16 2 C 0.03 0.75 7.39 88.52 0.65 1.40 16 3 N -0.51 -15.18 10.34 -179.40 -1.86 -17.03 16 4 C 0.06 1.49 6.08 41.52 0.25 1.74 16 5 C -0.03 -0.95 5.97 29.85 0.18 -0.77 16 6 C 0.08 2.82 5.58 86.30 0.48 3.30 16 7 N -0.68 -26.98 6.35 -513.86 -3.26 -30.25 16 8 C 0.12 5.74 5.51 86.31 0.48 6.22 16 9 C 0.02 1.02 1.64 -52.93 -0.09 0.94 16 10 C -0.48 -26.79 8.71 25.60 0.22 -26.57 16 11 H 0.05 2.80 7.82 -2.91 -0.02 2.77 16 12 C 0.02 1.05 5.43 84.65 0.46 1.51 16 13 N -0.92 -54.47 12.65 21.45 0.27 -54.19 16 14 Si 0.95 45.78 29.54 68.60 2.03 47.81 16 15 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 16 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 17 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 18 C -0.19 -7.88 9.96 30.61 0.30 -7.57 16 19 C -0.16 -7.83 9.15 30.62 0.28 -7.55 16 20 C -0.26 -5.34 11.07 66.78 0.74 -4.60 16 21 S 0.15 2.63 23.18 -56.49 -1.31 1.32 16 22 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 23 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.10 2.28 8.03 -2.39 -0.02 2.26 16 26 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 27 H 0.05 1.90 8.07 -2.39 -0.02 1.88 16 28 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.34 11.99 8.79 -89.69 -0.79 11.20 16 30 H 0.03 1.75 8.13 -2.39 -0.02 1.74 16 31 H 0.01 0.36 8.10 -2.38 -0.02 0.34 16 32 H 0.25 14.57 8.31 -92.70 -0.77 13.80 16 33 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 34 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 35 H 0.07 3.12 8.14 -2.38 -0.02 3.10 16 36 H 0.06 3.11 8.14 -2.39 -0.02 3.09 16 37 H 0.20 2.87 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -67.32 328.92 0.84 -66.48 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 0.26 Total: 18.25 kcal Atomic # 6 Polarization: -37.10 SS G_CDS: 4.71 Total: -32.39 kcal Atomic # 7 Polarization: -96.62 SS G_CDS: -4.85 Total: -101.47 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Atomic # 16 Polarization: 2.63 SS G_CDS: -1.31 Total: 1.32 kcal Total: -67.32 0.84 -66.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226388608.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.068 kcal (2) G-P(sol) polarization free energy of solvation -67.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds