Wall clock time and date at job start Mon Mar 30 2020 07:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.46954 * 2 1 4 4 C 1.50707 * 109.47089 * 240.00442 * 2 1 3 5 5 H 1.08002 * 119.99354 * 239.99884 * 4 2 1 6 6 C 1.37875 * 120.00169 * 59.99627 * 4 2 1 7 7 N 1.31516 * 120.00103 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00035 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47075 * 90.00532 * 8 6 4 10 10 H 1.48500 * 109.47156 * 210.00545 * 8 6 4 11 11 H 1.48500 * 109.46905 * 330.00204 * 8 6 4 12 12 N 1.46895 * 109.47297 * 120.00371 * 2 1 3 13 13 C 1.46847 * 110.99982 * 58.95112 * 12 2 1 14 14 C 1.53034 * 109.51345 * 185.84805 * 13 12 2 15 15 C 1.53123 * 109.27992 * 300.80438 * 14 13 12 16 16 C 1.53127 * 109.15019 * 57.67185 * 15 14 13 17 17 H 1.08999 * 109.50124 * 62.28085 * 16 15 14 18 18 C 1.50696 * 109.53517 * 182.38025 * 16 15 14 19 19 N 1.29025 * 124.91685 * 59.51747 * 18 16 15 20 20 C 1.31788 * 117.12462 * 179.81386 * 19 18 16 21 21 C 1.33638 * 114.49907 * 0.47191 * 20 19 18 22 22 S 1.70976 * 124.91808 * 239.82174 * 18 16 15 23 23 C 1.46843 * 110.99970 * 183.16477 * 12 2 1 24 24 H 1.09003 * 109.47324 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47529 * 299.99937 * 1 2 3 26 26 H 1.09006 * 109.47149 * 60.00083 * 1 2 3 27 27 H 0.96998 * 120.00348 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.46481 * 305.85957 * 13 12 2 29 29 H 1.08994 * 109.46283 * 65.83811 * 13 12 2 30 30 H 1.08997 * 109.50952 * 60.75924 * 14 13 12 31 31 H 1.08998 * 109.50459 * 180.87821 * 14 13 12 32 32 H 1.09003 * 109.53012 * 297.76758 * 15 14 13 33 33 H 1.08997 * 109.57453 * 177.60035 * 15 14 13 34 34 H 1.07996 * 122.74758 * 180.22876 * 20 19 18 35 35 H 1.08001 * 126.03777 * 179.72057 * 21 20 19 36 36 H 1.08993 * 109.46313 * 294.17341 * 23 12 2 37 37 H 1.09004 * 109.46429 * 54.14692 * 23 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3225 -1.1194 -4.0081 9 1 1.3448 -2.1613 -4.4126 10 1 2.4873 -0.1400 -5.1121 11 1 3.6309 -1.7563 -3.7120 12 7 2.0197 -0.6925 1.1993 13 6 1.5285 -2.0756 1.2458 14 6 1.9354 -2.7183 2.5737 15 6 3.4612 -2.6945 2.7003 16 6 3.9510 -1.2471 2.6003 17 1 3.5402 -0.6661 3.4259 18 6 5.4563 -1.2190 2.6653 19 7 6.2427 -1.8164 1.8349 20 6 7.5388 -1.6856 2.0346 21 6 7.8636 -0.9445 3.0981 22 16 6.3694 -0.3969 3.8543 23 6 3.4856 -0.6469 1.2717 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 0.7094 1.1619 -3.4844 28 1 0.4419 -2.0783 1.1589 29 1 1.9601 -2.6422 0.4208 30 1 1.4929 -2.1603 3.3989 31 1 1.5842 -3.7498 2.6015 32 1 3.9027 -3.2848 1.8973 33 1 3.7543 -3.1125 3.6633 34 1 8.2777 -2.1434 1.3937 35 1 8.8652 -0.7211 3.4349 36 1 3.9079 -1.2201 0.4464 37 1 3.8206 0.3882 1.2037 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249900931.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:27 Heat of formation + Delta-G solvation = 40.986578 kcal Electronic energy + Delta-G solvation = -18513.265829 eV Core-core repulsion = 15802.977899 eV Total energy + Delta-G solvation = -2710.287930 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.77695 -38.20426 -34.56458 -32.15357 -31.26778 -29.15720 -28.21920 -25.34469 -24.92122 -23.38626 -22.30984 -20.76485 -19.41246 -18.59518 -17.83927 -16.18121 -15.63502 -15.09913 -14.53189 -14.40302 -14.15933 -13.84853 -13.41664 -13.11795 -12.93247 -12.78199 -12.26402 -11.66452 -11.47455 -11.30129 -11.03053 -10.84041 -10.74615 -10.43411 -10.37794 -10.32790 -10.02584 -9.79028 -9.63074 -9.29088 -9.27055 -9.14249 -8.74145 -8.35929 -7.11858 -5.95889 -4.08203 0.80429 1.44366 1.83006 2.96525 3.29547 3.36555 3.41168 4.27864 4.43488 4.90721 5.16874 5.19694 5.23540 5.30419 5.40755 5.53751 5.68986 5.76015 5.92665 6.07041 6.19427 6.29421 6.31929 6.48312 6.51197 6.68252 6.81753 6.95120 7.00247 7.08875 7.21798 7.59489 7.75546 7.89254 8.00126 8.18428 8.35606 8.47246 9.01310 9.59467 11.04233 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.020894 B = 0.005978 C = 0.005256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.797276 B = 4682.496423 C = 5325.524654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.208 3.792 3 H 0.038 0.962 4 C -0.540 4.540 5 H 0.057 0.943 6 C 0.068 3.932 7 N -0.888 5.888 8 Si 0.886 3.114 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.537 5.537 13 C 0.057 3.943 14 C -0.116 4.116 15 C -0.101 4.101 16 C -0.012 4.012 17 H 0.091 0.909 18 C 0.080 3.920 19 N -0.472 5.472 20 C 0.044 3.956 21 C -0.274 4.274 22 S 0.101 5.899 23 C 0.082 3.918 24 H 0.028 0.972 25 H 0.015 0.985 26 H 0.084 0.916 27 H 0.260 0.740 28 H 0.072 0.928 29 H 0.038 0.962 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.172 0.828 35 H 0.173 0.827 36 H 0.051 0.949 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.708 -4.018 12.661 15.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.102 3.898 3 H 0.056 0.944 4 C -0.579 4.579 5 H 0.075 0.925 6 C -0.134 4.134 7 N -0.527 5.527 8 Si 0.714 3.286 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.200 1.200 12 N -0.261 5.261 13 C -0.071 4.071 14 C -0.154 4.154 15 C -0.140 4.140 16 C -0.034 4.034 17 H 0.109 0.891 18 C -0.199 4.199 19 N -0.185 5.185 20 C -0.107 4.107 21 C -0.413 4.413 22 S 0.356 5.644 23 C -0.049 4.049 24 H 0.047 0.953 25 H 0.034 0.966 26 H 0.102 0.898 27 H 0.070 0.930 28 H 0.091 0.909 29 H 0.056 0.944 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.189 0.811 35 H 0.190 0.810 36 H 0.069 0.931 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.995 -3.323 13.372 15.930 hybrid contribution 1.565 -1.215 -2.274 3.016 sum 9.560 -4.538 11.098 15.335 Atomic orbital electron populations 1.21821 0.97675 0.99157 1.00287 1.19254 0.92293 0.94034 0.84216 0.94389 1.21728 1.31608 1.12875 0.91677 0.92513 1.24893 0.94869 0.94823 0.98842 1.69878 1.36642 1.22744 1.23387 0.86692 0.79363 0.79539 0.83041 1.20697 1.21230 1.19981 1.62410 1.07093 1.14264 1.42338 1.21956 1.00326 0.90074 0.94775 1.21640 0.94486 0.99922 0.99352 1.21535 0.96627 0.94420 1.01467 1.20064 0.83286 0.98677 1.01411 0.89090 1.27334 1.01519 0.97177 0.93839 1.66250 1.03170 1.22017 1.27083 1.21846 0.92064 0.99561 0.97277 1.26975 1.02500 1.08797 1.03026 1.83965 0.98227 1.50623 1.31555 1.21735 0.90157 0.99851 0.93118 0.95317 0.96629 0.89787 0.92962 0.90941 0.94383 0.91720 0.92164 0.91261 0.92740 0.81078 0.80968 0.93097 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 8.72 37.16 0.32 -2.84 16 2 C 0.21 5.20 2.38 -68.87 -0.16 5.03 16 3 H 0.04 1.05 8.11 -51.93 -0.42 0.63 16 4 C -0.54 -14.62 7.18 -34.44 -0.25 -14.87 16 5 H 0.06 1.57 5.84 -52.49 -0.31 1.26 16 6 C 0.07 1.87 5.30 -17.82 -0.09 1.78 16 7 N -0.89 -25.22 11.32 55.43 0.63 -24.59 16 8 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 12 N -0.54 -11.37 4.66 -228.09 -1.06 -12.43 16 13 C 0.06 1.10 4.79 -3.84 -0.02 1.09 16 14 C -0.12 -1.77 6.09 -26.65 -0.16 -1.93 16 15 C -0.10 -1.53 5.26 -26.60 -0.14 -1.67 16 16 C -0.01 -0.19 2.78 -91.69 -0.26 -0.44 16 17 H 0.09 1.36 8.13 -51.93 -0.42 0.93 16 18 C 0.08 1.23 5.91 -13.46 -0.08 1.15 16 19 N -0.47 -7.72 10.53 -11.87 -0.12 -7.84 16 20 C 0.04 0.58 11.35 -19.18 -0.22 0.36 16 21 C -0.27 -3.09 11.37 29.12 0.33 -2.76 16 22 S 0.10 1.24 23.17 -107.50 -2.49 -1.25 16 23 C 0.08 1.63 4.35 -3.83 -0.02 1.62 16 24 H 0.03 0.66 6.26 -51.93 -0.33 0.33 16 25 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.08 2.22 6.07 -51.93 -0.32 1.91 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.07 1.42 5.98 -51.93 -0.31 1.11 16 29 H 0.04 0.82 6.73 -51.93 -0.35 0.47 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.17 1.81 8.06 -52.49 -0.42 1.39 16 35 H 0.17 1.40 8.06 -52.49 -0.42 0.97 16 36 H 0.05 1.16 6.85 -51.93 -0.36 0.80 16 37 H 0.06 1.29 8.10 -51.93 -0.42 0.87 16 LS Contribution 303.21 15.07 4.57 4.57 Total: -1.00 -28.90 303.21 -9.56 -38.47 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -5.32 Total: 0.03 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: -0.74 Total: -13.49 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: -0.56 Total: -44.87 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -2.49 Total: -1.25 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.90 -9.56 -38.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249900931.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.452 kcal (2) G-P(sol) polarization free energy of solvation -28.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds