Wall clock time and date at job start Mon Mar 30 2020 07:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.46954 * 2 1 4 4 C 1.50707 * 109.47089 * 240.00442 * 2 1 3 5 5 H 1.08002 * 119.99354 * 239.99884 * 4 2 1 6 6 C 1.37875 * 120.00169 * 59.99627 * 4 2 1 7 7 N 1.31516 * 120.00103 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00035 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47075 * 90.00532 * 8 6 4 10 10 H 1.48500 * 109.47156 * 210.00545 * 8 6 4 11 11 H 1.48500 * 109.46905 * 330.00204 * 8 6 4 12 12 N 1.46895 * 109.47297 * 120.00371 * 2 1 3 13 13 C 1.46847 * 110.99982 * 58.95112 * 12 2 1 14 14 C 1.53034 * 109.51345 * 185.84805 * 13 12 2 15 15 C 1.53123 * 109.27992 * 300.80438 * 14 13 12 16 16 C 1.53127 * 109.15019 * 57.67185 * 15 14 13 17 17 H 1.08999 * 109.50124 * 62.28085 * 16 15 14 18 18 C 1.50696 * 109.53517 * 182.38025 * 16 15 14 19 19 N 1.29025 * 124.91685 * 59.51747 * 18 16 15 20 20 C 1.31788 * 117.12462 * 179.81386 * 19 18 16 21 21 C 1.33638 * 114.49907 * 0.47191 * 20 19 18 22 22 S 1.70976 * 124.91808 * 239.82174 * 18 16 15 23 23 C 1.46843 * 110.99970 * 183.16477 * 12 2 1 24 24 H 1.09003 * 109.47324 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47529 * 299.99937 * 1 2 3 26 26 H 1.09006 * 109.47149 * 60.00083 * 1 2 3 27 27 H 0.96998 * 120.00348 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.46481 * 305.85957 * 13 12 2 29 29 H 1.08994 * 109.46283 * 65.83811 * 13 12 2 30 30 H 1.08997 * 109.50952 * 60.75924 * 14 13 12 31 31 H 1.08998 * 109.50459 * 180.87821 * 14 13 12 32 32 H 1.09003 * 109.53012 * 297.76758 * 15 14 13 33 33 H 1.08997 * 109.57453 * 177.60035 * 15 14 13 34 34 H 1.07996 * 122.74758 * 180.22876 * 20 19 18 35 35 H 1.08001 * 126.03777 * 179.72057 * 21 20 19 36 36 H 1.08993 * 109.46313 * 294.17341 * 23 12 2 37 37 H 1.09004 * 109.46429 * 54.14692 * 23 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3225 -1.1194 -4.0081 9 1 1.3448 -2.1613 -4.4126 10 1 2.4873 -0.1400 -5.1121 11 1 3.6309 -1.7563 -3.7120 12 7 2.0197 -0.6925 1.1993 13 6 1.5285 -2.0756 1.2458 14 6 1.9354 -2.7183 2.5737 15 6 3.4612 -2.6945 2.7003 16 6 3.9510 -1.2471 2.6003 17 1 3.5402 -0.6661 3.4259 18 6 5.4563 -1.2190 2.6653 19 7 6.2427 -1.8164 1.8349 20 6 7.5388 -1.6856 2.0346 21 6 7.8636 -0.9445 3.0981 22 16 6.3694 -0.3969 3.8543 23 6 3.4856 -0.6469 1.2717 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 0.7094 1.1619 -3.4844 28 1 0.4419 -2.0783 1.1589 29 1 1.9601 -2.6422 0.4208 30 1 1.4929 -2.1603 3.3989 31 1 1.5842 -3.7498 2.6015 32 1 3.9027 -3.2848 1.8973 33 1 3.7543 -3.1125 3.6633 34 1 8.2777 -2.1434 1.3937 35 1 8.8652 -0.7211 3.4349 36 1 3.9079 -1.2201 0.4464 37 1 3.8206 0.3882 1.2037 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249900931.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:26 Heat of formation + Delta-G solvation = 22.729790 kcal Electronic energy + Delta-G solvation = -18514.057503 eV Core-core repulsion = 15802.977899 eV Total energy + Delta-G solvation = -2711.079603 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.93811 -39.68404 -36.27161 -33.98212 -32.66010 -30.65938 -29.71401 -27.28781 -26.29716 -24.95461 -23.64591 -22.17546 -21.08496 -19.87977 -18.95215 -18.17737 -17.17852 -16.44789 -16.09768 -15.90444 -15.43142 -15.14015 -15.07323 -14.57847 -14.38775 -14.32322 -13.73335 -13.34500 -13.05142 -12.96897 -12.67444 -12.43752 -12.25637 -12.20898 -12.15545 -12.09400 -11.62035 -11.45682 -11.12632 -11.12093 -10.50348 -10.43946 -10.30161 -9.76867 -8.97952 -8.06478 -6.27758 -0.21126 0.45891 0.83772 1.33387 1.35192 1.44594 1.92484 2.37764 3.12163 3.16206 3.45575 3.90588 3.98019 4.08766 4.33909 4.42245 4.46872 4.53251 4.59715 4.68259 4.79528 4.89512 5.03656 5.05831 5.08223 5.14473 5.16338 5.26497 5.27925 5.32381 5.50114 5.55959 5.70412 6.00651 6.18211 6.35343 6.63551 6.88160 6.91997 7.42775 8.89707 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.020894 B = 0.005978 C = 0.005256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.797276 B = 4682.496423 C = 5325.524654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.210 3.790 3 H 0.004 0.996 4 C -0.547 4.547 5 H 0.043 0.957 6 C 0.022 3.978 7 N -0.911 5.911 8 Si 0.943 3.057 9 H -0.273 1.273 10 H -0.280 1.280 11 H -0.280 1.280 12 N -0.531 5.531 13 C 0.057 3.943 14 C -0.106 4.106 15 C -0.096 4.096 16 C -0.003 4.003 17 H 0.107 0.893 18 C 0.042 3.958 19 N -0.507 5.507 20 C 0.016 3.984 21 C -0.253 4.253 22 S 0.148 5.852 23 C 0.091 3.909 24 H 0.034 0.966 25 H 0.033 0.967 26 H 0.059 0.941 27 H 0.262 0.738 28 H 0.070 0.930 29 H 0.009 0.991 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.047 0.953 33 H 0.083 0.917 34 H 0.190 0.810 35 H 0.210 0.790 36 H 0.014 0.986 37 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.827 -4.730 14.554 18.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.103 3.897 3 H 0.022 0.978 4 C -0.586 4.586 5 H 0.062 0.938 6 C -0.177 4.177 7 N -0.550 5.550 8 Si 0.769 3.231 9 H -0.198 1.198 10 H -0.205 1.205 11 H -0.205 1.205 12 N -0.255 5.255 13 C -0.071 4.071 14 C -0.143 4.143 15 C -0.135 4.135 16 C -0.025 4.025 17 H 0.125 0.875 18 C -0.236 4.236 19 N -0.222 5.222 20 C -0.134 4.134 21 C -0.392 4.392 22 S 0.403 5.597 23 C -0.040 4.040 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.027 0.973 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.066 0.934 33 H 0.102 0.898 34 H 0.207 0.793 35 H 0.227 0.773 36 H 0.032 0.968 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 9.105 -4.045 15.275 18.237 hybrid contribution 1.318 -0.944 -2.818 3.251 sum 10.423 -4.989 12.458 16.992 Atomic orbital electron populations 1.21627 0.96829 0.99322 0.99878 1.19066 0.92924 0.92479 0.85255 0.97824 1.21883 1.31332 1.12498 0.92899 0.93850 1.25569 0.95194 0.95566 1.01407 1.69986 1.37372 1.23664 1.24001 0.85790 0.78597 0.78695 0.79975 1.19816 1.20533 1.20495 1.62387 1.07893 1.15327 1.39867 1.22019 0.99862 0.88658 0.96545 1.21594 0.94731 1.01070 0.96942 1.21493 0.96205 0.93632 1.02170 1.19892 0.84568 0.99122 0.98919 0.87517 1.27113 1.01259 0.99303 0.95883 1.66220 1.04795 1.22946 1.28226 1.22181 0.91392 1.01061 0.98792 1.27467 1.03867 1.06378 1.01477 1.83732 0.97651 1.48826 1.29477 1.21603 0.89058 0.98508 0.94802 0.94740 0.94846 0.92265 0.92820 0.91214 0.97261 0.90029 0.89757 0.93428 0.89796 0.79302 0.77328 0.96767 0.93690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.79 8.72 71.98 0.63 -5.17 16 2 C 0.21 10.87 2.38 44.17 0.10 10.98 16 3 H 0.00 0.22 8.11 -2.39 -0.02 0.20 16 4 C -0.55 -30.75 7.18 25.60 0.18 -30.57 16 5 H 0.04 2.51 5.84 -2.91 -0.02 2.50 16 6 C 0.02 1.27 5.30 84.65 0.45 1.72 16 7 N -0.91 -52.95 11.32 21.45 0.24 -52.70 16 8 Si 0.94 45.14 29.54 68.60 2.03 47.17 16 9 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 10 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 11 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 12 N -0.53 -22.98 4.66 -875.54 -4.08 -27.06 16 13 C 0.06 2.23 4.79 86.32 0.41 2.64 16 14 C -0.11 -3.02 6.09 30.65 0.19 -2.83 16 15 C -0.10 -2.76 5.26 30.68 0.16 -2.60 16 16 C 0.00 -0.09 2.78 -11.48 -0.03 -0.12 16 17 H 0.11 2.98 8.13 -2.39 -0.02 2.97 16 18 C 0.04 1.25 5.91 88.52 0.52 1.78 16 19 N -0.51 -16.45 10.53 -191.45 -2.02 -18.46 16 20 C 0.02 0.40 11.35 83.66 0.95 1.35 16 21 C -0.25 -4.93 11.37 66.78 0.76 -4.18 16 22 S 0.15 3.25 23.17 -56.49 -1.31 1.94 16 23 C 0.09 3.75 4.35 86.33 0.38 4.13 16 24 H 0.03 1.60 6.26 -2.39 -0.01 1.58 16 25 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.06 3.20 6.07 -2.38 -0.01 3.18 16 27 H 0.26 14.51 8.31 -92.71 -0.77 13.73 16 28 H 0.07 2.71 5.98 -2.39 -0.01 2.70 16 29 H 0.01 0.40 6.73 -2.39 -0.02 0.39 16 30 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.19 3.73 8.06 -2.91 -0.02 3.71 16 35 H 0.21 2.42 8.06 -2.91 -0.02 2.39 16 36 H 0.01 0.68 6.85 -2.39 -0.02 0.66 16 37 H 0.04 1.96 8.10 -2.38 -0.02 1.94 16 Total: -1.00 -64.64 303.21 0.63 -64.01 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: 1.05 Total: 7.98 kcal Atomic # 6 Polarization: -27.58 SS G_CDS: 4.70 Total: -22.87 kcal Atomic # 7 Polarization: -92.38 SS G_CDS: -5.85 Total: -98.23 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Atomic # 16 Polarization: 3.25 SS G_CDS: -1.31 Total: 1.94 kcal Total: -64.64 0.63 -64.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249900931.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.742 kcal (2) G-P(sol) polarization free energy of solvation -64.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds