Wall clock time and date at job start Mon Mar 30 2020 06:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 S 1.70997 * 125.57638 * 2 1 4 4 C 1.75891 * 90.80811 * 180.02562 * 3 2 1 5 5 C 1.50706 * 124.98888 * 179.97438 * 4 3 2 6 6 C 1.53115 * 109.52569 * 59.56955 * 5 4 3 7 7 C 1.53038 * 109.27676 * 182.50270 * 6 5 4 8 8 N 1.46848 * 109.57501 * 59.08139 * 7 6 5 9 9 C 1.46902 * 110.99914 * 174.19372 * 8 7 6 10 10 C 1.46842 * 111.19688 * 298.29159 * 8 7 6 11 11 C 1.53029 * 109.52684 * 61.74505 * 10 8 7 12 12 N 1.28792 * 110.01788 * 359.69398 * 4 3 2 13 13 C 1.33652 * 116.05702 * 0.23585 * 12 4 3 14 14 C 1.41155 * 122.86028 * 180.02562 * 13 12 4 15 15 H 1.07999 * 120.00308 * 179.97438 * 14 13 12 16 16 C 1.39723 * 120.00345 * 359.97410 * 14 13 12 17 17 N 1.31023 * 119.99428 * 359.97438 * 16 14 13 18 18 Si 1.86791 * 120.00253 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47331 * 59.99728 * 18 16 14 20 20 H 1.48500 * 109.47414 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47387 * 300.00001 * 18 16 14 22 22 H 1.08996 * 109.47085 * 270.31283 * 1 2 3 23 23 H 1.08999 * 109.47537 * 30.31983 * 1 2 3 24 24 H 1.09005 * 109.46864 * 150.31652 * 1 2 3 25 25 H 1.09004 * 109.51937 * 179.69217 * 5 4 3 26 26 H 1.09000 * 109.50414 * 302.38140 * 6 5 4 27 27 H 1.09003 * 109.50379 * 62.49667 * 6 5 4 28 28 H 1.08999 * 109.40817 * 299.06345 * 7 6 5 29 29 H 1.09000 * 109.46238 * 179.12889 * 7 6 5 30 30 H 1.08996 * 109.46941 * 184.20904 * 9 8 7 31 31 H 1.08998 * 109.47353 * 304.21132 * 9 8 7 32 32 H 1.09000 * 109.46957 * 64.20989 * 9 8 7 33 33 H 1.09001 * 109.46203 * 301.72398 * 10 8 7 34 34 H 1.09004 * 109.46228 * 181.75951 * 10 8 7 35 35 H 1.09002 * 109.50941 * 180.88132 * 11 10 8 36 36 H 1.08997 * 109.54095 * 60.77632 * 11 10 8 37 37 H 0.97001 * 119.99864 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5018 1.3908 0.0000 4 6 3.9467 0.3878 -0.0008 5 6 5.3607 0.9092 -0.0017 6 6 5.5887 1.7722 1.2424 7 6 7.0056 2.3493 1.2041 8 7 7.1761 3.1548 -0.0119 9 6 8.4776 3.8360 -0.0139 10 6 7.0090 2.3356 -1.2191 11 6 5.5918 1.7594 -1.2541 12 7 3.6188 -0.8577 0.0055 13 6 2.3082 -1.1198 0.0061 14 6 1.7897 -2.4326 0.0131 15 1 0.7214 -2.5913 0.0137 16 6 2.6584 -3.5269 0.0193 17 7 3.9544 -3.3344 0.0180 18 14 1.9722 -5.2642 0.0293 19 1 1.1390 -5.4744 -1.1819 20 1 3.0924 -6.2390 0.0341 21 1 1.1394 -5.4605 1.2430 22 1 -0.3633 0.0056 1.0276 23 1 -0.3634 0.8871 -0.5188 24 1 -0.3633 -0.8929 -0.5089 25 1 6.0579 0.0713 0.0035 26 1 4.8651 2.5872 1.2576 27 1 5.4678 1.1607 2.1366 28 1 7.7289 1.5339 1.2041 29 1 7.1659 2.9768 2.0808 30 1 8.5475 4.4834 -0.8879 31 1 8.5754 4.4355 0.8912 32 1 9.2758 3.0944 -0.0463 33 1 7.7324 1.5203 -1.2078 34 1 7.1718 2.9532 -2.1024 35 1 5.4730 1.1388 -2.1422 36 1 4.8677 2.5737 -1.2796 37 1 4.5576 -4.0941 0.0219 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000257602209.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:22 Heat of formation + Delta-G solvation = 23.631487 kcal Electronic energy + Delta-G solvation = -18154.451577 eV Core-core repulsion = 15443.411074 eV Total energy + Delta-G solvation = -2711.040503 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.96879 -37.63720 -34.11499 -32.85874 -30.87179 -30.66619 -27.67405 -26.62378 -24.00251 -22.90800 -22.84468 -21.08249 -19.54888 -18.61212 -16.85306 -15.79598 -15.30739 -14.98185 -14.89958 -14.46361 -13.94494 -13.68943 -13.23429 -12.86429 -12.66948 -12.30340 -12.26990 -11.80354 -11.76415 -11.47135 -11.38542 -11.32697 -11.10316 -10.97339 -10.59069 -10.50505 -10.46589 -10.16335 -10.01901 -9.38081 -9.22170 -8.27417 -7.91797 -7.70562 -7.18593 -6.50242 -4.28342 2.34115 3.00267 3.08763 3.10060 3.12818 3.70287 4.00330 4.02355 4.31526 4.93864 5.04175 5.08196 5.28791 5.38277 5.47784 5.56239 5.59668 5.67389 5.79001 5.82786 5.97135 5.98297 6.09684 6.24994 6.32745 6.45344 6.54192 6.65730 6.69474 6.76032 6.99505 7.13346 7.15011 7.15769 7.30743 7.67677 8.23150 8.60409 8.93373 9.67461 10.36785 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.024826 B = 0.005671 C = 0.004892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.599279 B = 4936.561910 C = 5722.082300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 C -0.429 4.429 3 S -0.036 6.036 4 C 0.064 3.936 5 C -0.001 4.001 6 C -0.108 4.108 7 C 0.059 3.941 8 N -0.544 5.544 9 C 0.026 3.974 10 C 0.059 3.941 11 C -0.107 4.107 12 N -0.399 5.399 13 C 0.225 3.775 14 C -0.428 4.428 15 H 0.084 0.916 16 C 0.072 3.928 17 N -0.752 5.752 18 Si 0.909 3.091 19 H -0.266 1.266 20 H -0.279 1.279 21 H -0.266 1.266 22 H 0.034 0.966 23 H 0.033 0.967 24 H 0.054 0.946 25 H 0.088 0.912 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.033 0.967 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.022 0.978 33 H 0.033 0.967 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.864 8.397 -0.072 10.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.549 4.549 3 S 0.213 5.787 4 C -0.219 4.219 5 C -0.024 4.024 6 C -0.146 4.146 7 C -0.069 4.069 8 N -0.269 5.269 9 C -0.122 4.122 10 C -0.069 4.069 11 C -0.146 4.146 12 N -0.112 5.112 13 C 0.103 3.897 14 C -0.463 4.463 15 H 0.102 0.898 16 C -0.150 4.150 17 N -0.375 5.375 18 Si 0.734 3.266 19 H -0.190 1.190 20 H -0.204 1.204 21 H -0.190 1.190 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.073 0.927 25 H 0.106 0.894 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.051 0.949 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.041 0.959 33 H 0.052 0.948 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.918 9.215 -0.069 11.523 hybrid contribution -0.029 -2.401 0.018 2.401 sum 6.889 6.814 -0.051 9.690 Atomic orbital electron populations 1.19440 0.90033 0.99558 0.98941 1.23928 0.98985 0.93577 1.38448 1.82557 1.02677 1.14978 1.78515 1.27536 0.96965 0.91460 1.05986 1.19621 0.90505 0.97312 0.94943 1.21669 0.96078 0.99124 0.97766 1.22096 0.97090 0.95452 0.92271 1.61935 1.30986 1.31355 1.02594 1.22332 0.89247 0.98187 1.02476 1.22094 0.97093 0.95283 0.92427 1.21664 0.96056 0.99197 0.97702 1.67403 1.17805 1.14172 1.11776 1.17857 0.84353 0.93768 0.93681 1.18938 0.94188 0.88187 1.44943 0.89793 1.25986 0.94691 1.01220 0.93137 1.70113 1.02638 1.32237 1.32558 0.86365 0.79268 0.81201 0.79809 1.19033 1.20379 1.19025 0.94756 0.94843 0.92743 0.89394 0.90666 0.91106 0.94852 0.90819 0.91554 0.91578 0.95933 0.94833 0.90821 0.91115 0.90656 0.91669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.45 10.00 36.01 0.36 -0.09 16 2 C -0.43 -10.96 6.47 -34.51 -0.22 -11.18 16 3 S -0.04 -0.81 22.54 -107.50 -2.42 -3.24 16 4 C 0.06 1.49 6.17 -13.55 -0.08 1.40 16 5 C 0.00 -0.02 2.71 -91.65 -0.25 -0.27 16 6 C -0.11 -1.71 5.32 -26.65 -0.14 -1.86 16 7 C 0.06 0.77 5.46 -3.83 -0.02 0.75 16 8 N -0.54 -7.03 4.91 -242.97 -1.19 -8.22 16 9 C 0.03 0.26 9.59 60.07 0.58 0.84 16 10 C 0.06 0.78 5.46 -3.84 -0.02 0.76 16 11 C -0.11 -1.71 5.32 -26.65 -0.14 -1.85 16 12 N -0.40 -10.88 8.46 -8.36 -0.07 -10.95 16 13 C 0.23 6.33 6.47 -86.17 -0.56 5.77 16 14 C -0.43 -11.89 8.91 -37.92 -0.34 -12.23 16 15 H 0.08 2.21 6.76 -52.49 -0.35 1.86 16 16 C 0.07 1.88 5.49 -17.34 -0.10 1.79 16 17 N -0.75 -20.49 11.69 55.54 0.65 -19.84 16 18 Si 0.91 19.33 29.56 -169.99 -5.02 14.31 16 19 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 20 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 21 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 22 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 23 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.05 1.18 7.08 -51.93 -0.37 0.81 16 25 H 0.09 1.72 8.14 -51.93 -0.42 1.29 16 26 H 0.07 1.24 7.90 -51.93 -0.41 0.83 16 27 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.85 8.09 -51.93 -0.42 0.44 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 32 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.86 8.12 -51.93 -0.42 0.43 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.07 1.24 7.92 -51.93 -0.41 0.83 16 37 H 0.27 6.79 8.30 -40.82 -0.34 6.46 16 LS Contribution 311.37 15.07 4.69 4.69 Total: -1.00 -29.92 311.37 -10.05 -39.97 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -5.74 Total: -0.56 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: -0.93 Total: -16.16 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: -0.61 Total: -39.01 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.02 Total: 14.31 kcal Atomic # 16 Polarization: -0.81 SS G_CDS: -2.42 Total: -3.24 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.92 -10.05 -39.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257602209.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.598 kcal (2) G-P(sol) polarization free energy of solvation -29.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds