Wall clock time and date at job start Mon Mar 30 2020 06:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 S 1.70997 * 125.57638 * 2 1 4 4 C 1.75891 * 90.80811 * 180.02562 * 3 2 1 5 5 C 1.50706 * 124.98888 * 179.97438 * 4 3 2 6 6 C 1.53115 * 109.52569 * 59.56955 * 5 4 3 7 7 C 1.53038 * 109.27676 * 182.50270 * 6 5 4 8 8 N 1.46848 * 109.57501 * 59.08139 * 7 6 5 9 9 C 1.46902 * 110.99914 * 174.19372 * 8 7 6 10 10 C 1.46842 * 111.19688 * 298.29159 * 8 7 6 11 11 C 1.53029 * 109.52684 * 61.74505 * 10 8 7 12 12 N 1.28792 * 110.01788 * 359.69398 * 4 3 2 13 13 C 1.33652 * 116.05702 * 0.23585 * 12 4 3 14 14 C 1.41155 * 122.86028 * 180.02562 * 13 12 4 15 15 H 1.07999 * 120.00308 * 179.97438 * 14 13 12 16 16 C 1.39723 * 120.00345 * 359.97410 * 14 13 12 17 17 N 1.31023 * 119.99428 * 359.97438 * 16 14 13 18 18 Si 1.86791 * 120.00253 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47331 * 59.99728 * 18 16 14 20 20 H 1.48500 * 109.47414 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47387 * 300.00001 * 18 16 14 22 22 H 1.08996 * 109.47085 * 270.31283 * 1 2 3 23 23 H 1.08999 * 109.47537 * 30.31983 * 1 2 3 24 24 H 1.09005 * 109.46864 * 150.31652 * 1 2 3 25 25 H 1.09004 * 109.51937 * 179.69217 * 5 4 3 26 26 H 1.09000 * 109.50414 * 302.38140 * 6 5 4 27 27 H 1.09003 * 109.50379 * 62.49667 * 6 5 4 28 28 H 1.08999 * 109.40817 * 299.06345 * 7 6 5 29 29 H 1.09000 * 109.46238 * 179.12889 * 7 6 5 30 30 H 1.08996 * 109.46941 * 184.20904 * 9 8 7 31 31 H 1.08998 * 109.47353 * 304.21132 * 9 8 7 32 32 H 1.09000 * 109.46957 * 64.20989 * 9 8 7 33 33 H 1.09001 * 109.46203 * 301.72398 * 10 8 7 34 34 H 1.09004 * 109.46228 * 181.75951 * 10 8 7 35 35 H 1.09002 * 109.50941 * 180.88132 * 11 10 8 36 36 H 1.08997 * 109.54095 * 60.77632 * 11 10 8 37 37 H 0.97001 * 119.99864 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5018 1.3908 0.0000 4 6 3.9467 0.3878 -0.0008 5 6 5.3607 0.9092 -0.0017 6 6 5.5887 1.7722 1.2424 7 6 7.0056 2.3493 1.2041 8 7 7.1761 3.1548 -0.0119 9 6 8.4776 3.8360 -0.0139 10 6 7.0090 2.3356 -1.2191 11 6 5.5918 1.7594 -1.2541 12 7 3.6188 -0.8577 0.0055 13 6 2.3082 -1.1198 0.0061 14 6 1.7897 -2.4326 0.0131 15 1 0.7214 -2.5913 0.0137 16 6 2.6584 -3.5269 0.0193 17 7 3.9544 -3.3344 0.0180 18 14 1.9722 -5.2642 0.0293 19 1 1.1390 -5.4744 -1.1819 20 1 3.0924 -6.2390 0.0341 21 1 1.1394 -5.4605 1.2430 22 1 -0.3633 0.0056 1.0276 23 1 -0.3634 0.8871 -0.5188 24 1 -0.3633 -0.8929 -0.5089 25 1 6.0579 0.0713 0.0035 26 1 4.8651 2.5872 1.2576 27 1 5.4678 1.1607 2.1366 28 1 7.7289 1.5339 1.2041 29 1 7.1659 2.9768 2.0808 30 1 8.5475 4.4834 -0.8879 31 1 8.5754 4.4355 0.8912 32 1 9.2758 3.0944 -0.0463 33 1 7.7324 1.5203 -1.2078 34 1 7.1718 2.9532 -2.1024 35 1 5.4730 1.1388 -2.1422 36 1 4.8677 2.5737 -1.2796 37 1 4.5576 -4.0941 0.0219 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257602209.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:22 Heat of formation + Delta-G solvation = 5.155723 kcal Electronic energy + Delta-G solvation = -18155.252746 eV Core-core repulsion = 15443.411074 eV Total energy + Delta-G solvation = -2711.841672 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.32231 -39.35802 -35.61907 -34.62678 -32.64186 -31.83822 -29.39425 -28.01472 -25.66383 -24.34156 -24.08521 -22.70107 -20.88533 -20.45633 -18.72429 -17.32434 -17.03723 -16.49995 -16.01484 -15.62645 -15.39142 -15.23566 -14.88764 -14.43478 -14.08583 -13.56575 -13.48560 -13.36701 -13.33341 -13.26483 -12.90981 -12.89030 -12.45158 -12.39934 -12.21770 -12.15843 -11.91742 -11.47826 -11.46845 -11.25171 -11.09056 -9.82471 -9.59511 -9.25094 -9.13357 -8.43426 -6.31530 0.45289 1.15987 1.35984 1.41147 1.48413 1.78080 2.23015 2.39032 3.02161 3.45492 3.47937 3.83684 3.93042 4.21397 4.28494 4.41182 4.53152 4.61922 4.63115 4.68837 4.72206 4.78003 4.89370 4.89736 4.93212 4.98951 5.01881 5.09139 5.15938 5.21899 5.33053 5.37449 5.43910 5.71806 6.12448 6.18515 6.20825 6.61192 6.92311 7.75158 8.45482 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.024826 B = 0.005671 C = 0.004892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.599279 B = 4936.561910 C = 5722.082300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 C -0.456 4.456 3 S 0.013 5.987 4 C 0.065 3.935 5 C -0.001 4.001 6 C -0.101 4.101 7 C 0.065 3.935 8 N -0.554 5.554 9 C 0.026 3.974 10 C 0.065 3.935 11 C -0.101 4.101 12 N -0.446 5.446 13 C 0.190 3.810 14 C -0.468 4.468 15 H 0.085 0.915 16 C 0.027 3.973 17 N -0.789 5.789 18 Si 0.986 3.014 19 H -0.260 1.260 20 H -0.268 1.268 21 H -0.260 1.260 22 H 0.043 0.957 23 H 0.054 0.946 24 H 0.050 0.950 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.034 0.966 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.027 0.973 33 H 0.034 0.966 34 H 0.095 0.905 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.524 9.487 -0.073 12.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.576 4.576 3 S 0.263 5.737 4 C -0.219 4.219 5 C -0.024 4.024 6 C -0.140 4.140 7 C -0.063 4.063 8 N -0.279 5.279 9 C -0.122 4.122 10 C -0.062 4.062 11 C -0.139 4.139 12 N -0.160 5.160 13 C 0.068 3.932 14 C -0.502 4.502 15 H 0.103 0.897 16 C -0.192 4.192 17 N -0.413 5.413 18 Si 0.807 3.193 19 H -0.184 1.184 20 H -0.193 1.193 21 H -0.184 1.184 22 H 0.061 0.939 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.052 0.948 29 H 0.114 0.886 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.045 0.955 33 H 0.052 0.948 34 H 0.113 0.887 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.577 10.344 -0.071 12.822 hybrid contribution -0.226 -2.580 0.019 2.590 sum 7.352 7.764 -0.052 10.692 Atomic orbital electron populations 1.19476 0.88086 1.00398 0.99739 1.24584 1.01012 0.94595 1.37431 1.82183 1.01160 1.12859 1.77541 1.28394 0.99188 0.90932 1.03361 1.19800 0.87384 0.97560 0.97653 1.21601 0.98261 0.98280 0.95831 1.22031 0.94757 0.95924 0.93544 1.61934 1.33042 1.30996 1.01976 1.22408 0.87681 0.98267 1.03811 1.22028 0.94765 0.95745 0.93707 1.21597 0.98231 0.98370 0.95752 1.67405 1.17927 1.16204 1.14434 1.18325 0.85332 0.94906 0.94660 1.19268 0.94646 0.89282 1.46971 0.89717 1.26893 0.94787 1.05404 0.92096 1.70221 1.03962 1.33696 1.33415 0.85201 0.78702 0.75433 0.79980 1.18396 1.19280 1.18412 0.93871 0.92735 0.93099 0.90977 0.90998 0.92191 0.94786 0.88638 0.90298 0.90304 0.95451 0.94767 0.88650 0.92193 0.90985 0.91228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.78 10.00 71.24 0.71 -0.06 16 2 C -0.46 -23.55 6.47 25.56 0.17 -23.38 16 3 S 0.01 0.56 22.54 -56.49 -1.27 -0.71 16 4 C 0.06 3.04 6.17 88.56 0.55 3.59 16 5 C 0.00 -0.04 2.71 -11.46 -0.03 -0.07 16 6 C -0.10 -3.14 5.32 30.65 0.16 -2.98 16 7 C 0.07 1.59 5.46 86.33 0.47 2.06 16 8 N -0.55 -12.82 4.91 -922.61 -4.53 -17.35 16 9 C 0.03 0.43 9.59 127.69 1.22 1.66 16 10 C 0.07 1.59 5.46 86.32 0.47 2.06 16 11 C -0.10 -3.13 5.32 30.64 0.16 -2.97 16 12 N -0.45 -25.20 8.46 -180.35 -1.53 -26.72 16 13 C 0.19 11.00 6.47 39.45 0.26 11.26 16 14 C -0.47 -26.78 8.91 23.35 0.21 -26.57 16 15 H 0.08 4.61 6.76 -2.91 -0.02 4.59 16 16 C 0.03 1.43 5.49 85.17 0.47 1.90 16 17 N -0.79 -44.33 11.69 21.80 0.25 -44.08 16 18 Si 0.99 40.25 29.56 68.60 2.03 42.28 16 19 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 20 H -0.27 -10.36 7.11 99.48 0.71 -9.66 16 21 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 22 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 23 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 24 H 0.05 2.22 7.08 -2.38 -0.02 2.21 16 25 H 0.07 2.90 8.14 -2.38 -0.02 2.88 16 26 H 0.07 2.28 7.90 -2.39 -0.02 2.26 16 27 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.10 1.93 8.09 -2.39 -0.02 1.91 16 30 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.08 1.14 8.09 -2.39 -0.02 1.12 16 32 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.10 1.93 8.12 -2.38 -0.02 1.91 16 35 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.07 2.28 7.92 -2.39 -0.02 2.26 16 37 H 0.28 14.21 8.30 -92.71 -0.77 13.44 16 Total: -1.00 -66.16 311.37 0.81 -65.34 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 1.04 Total: 14.76 kcal Atomic # 6 Polarization: -38.34 SS G_CDS: 4.82 Total: -33.52 kcal Atomic # 7 Polarization: -82.35 SS G_CDS: -5.80 Total: -88.15 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 2.03 Total: 42.28 kcal Atomic # 16 Polarization: 0.56 SS G_CDS: -1.27 Total: -0.71 kcal Total: -66.16 0.81 -65.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257602209.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.498 kcal (2) G-P(sol) polarization free energy of solvation -66.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds