Wall clock time and date at job start Mon Mar 30 2020 06:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30315 * 125.97428 * 2 1 4 4 N 1.39877 * 109.22812 * 179.97438 * 3 2 1 5 5 C 1.46504 * 125.67393 * 180.02562 * 4 3 2 6 6 C 1.52580 * 109.22744 * 61.21408 * 5 4 3 7 7 C 1.53093 * 109.95781 * 169.00068 * 6 5 4 8 8 S 1.81750 * 108.83918 * 63.02404 * 7 6 5 9 9 C 1.81742 * 102.22267 * 306.73604 * 8 7 6 10 10 C 1.52582 * 109.22465 * 299.97718 * 5 4 3 11 11 C 1.34504 * 108.65008 * 359.75414 * 4 3 2 12 12 C 1.50700 * 126.41003 * 180.26773 * 11 4 3 13 13 C 1.39282 * 107.18607 * 0.38874 * 11 4 3 14 14 C 1.41593 * 126.55950 * 179.86870 * 13 11 4 15 15 H 1.08000 * 119.99723 * 326.99479 * 14 13 11 16 16 C 1.39698 * 119.99879 * 146.98347 * 14 13 11 17 17 N 1.31019 * 120.00146 * 332.76325 * 16 14 13 18 18 Si 1.86797 * 119.99531 * 152.76371 * 16 14 13 19 19 H 1.48502 * 109.46971 * 269.99780 * 18 16 14 20 20 H 1.48494 * 109.47485 * 30.00041 * 18 16 14 21 21 H 1.48503 * 109.46788 * 150.00192 * 18 16 14 22 22 H 1.08994 * 109.46973 * 269.78405 * 1 2 3 23 23 H 1.09003 * 109.47104 * 29.78075 * 1 2 3 24 24 H 1.08999 * 109.47326 * 149.78028 * 1 2 3 25 25 H 1.09004 * 109.22080 * 180.57617 * 5 4 3 26 26 H 1.08999 * 109.38756 * 289.15254 * 6 5 4 27 27 H 1.09007 * 109.38648 * 48.85597 * 6 5 4 28 28 H 1.09006 * 109.57486 * 303.21876 * 7 6 5 29 29 H 1.08992 * 109.57714 * 182.83187 * 7 6 5 30 30 H 1.09003 * 109.57470 * 293.45906 * 9 8 7 31 31 H 1.08998 * 109.68287 * 173.13307 * 9 8 7 32 32 H 1.09001 * 109.39196 * 311.14389 * 10 5 4 33 33 H 1.08997 * 109.38986 * 70.85023 * 10 5 4 34 34 H 1.09006 * 109.46793 * 270.17705 * 12 11 4 35 35 H 1.09005 * 109.46961 * 30.16743 * 12 11 4 36 36 H 1.08990 * 109.47490 * 150.17422 * 12 11 4 37 37 H 0.97003 * 120.00079 * 353.13171 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2725 1.0546 0.0000 4 7 3.6120 0.6516 0.0006 5 6 4.7730 1.5451 0.0013 6 6 4.7475 2.4011 1.2641 7 6 6.0793 3.1395 1.4218 8 16 6.2934 4.2705 0.0153 9 6 6.0628 3.1633 -1.4073 10 6 4.7328 2.4222 -1.2466 11 6 3.6567 -0.6927 0.0064 12 6 4.8985 -1.5464 0.0147 13 6 2.3405 -1.1483 0.0005 14 6 1.9154 -2.4989 0.0010 15 1 2.5042 -3.2504 -0.5039 16 6 0.7347 -2.8593 0.6549 17 7 0.3061 -2.1515 1.6707 18 14 -0.2329 -4.3505 0.0808 19 1 -1.2215 -3.9337 -0.9459 20 1 0.6974 -5.3490 -0.5043 21 1 -0.9440 -4.9540 1.2364 22 1 -0.3633 -0.0039 1.0276 23 1 -0.3633 0.8920 -0.5104 24 1 -0.3634 -0.8880 -0.5172 25 1 5.6851 0.9483 -0.0087 26 1 3.9375 3.1269 1.1929 27 1 4.5834 1.7616 2.1315 28 1 6.8968 2.4187 1.4386 29 1 6.0732 3.7093 2.3509 30 1 6.8800 2.4430 -1.4457 31 1 6.0467 3.7468 -2.3278 32 1 4.5585 1.7974 -2.1226 33 1 3.9237 3.1466 -1.1537 34 1 5.2036 -1.7539 -1.0110 35 1 5.6993 -1.0178 0.5320 36 1 4.6910 -2.4847 0.5290 37 1 0.8564 -1.4391 2.0321 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258179980.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:27 Heat of formation + Delta-G solvation = 48.325069 kcal Electronic energy + Delta-G solvation = -18607.348411 eV Core-core repulsion = 15897.378702 eV Total energy + Delta-G solvation = -2709.969709 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.88154 -36.85943 -33.70407 -31.90156 -31.61700 -30.07415 -27.94496 -26.81044 -25.12093 -23.47428 -23.09594 -20.76710 -19.44678 -17.95833 -17.23255 -16.62738 -15.72093 -14.83496 -14.09742 -13.95026 -13.87417 -13.70339 -13.25219 -12.99465 -12.87479 -12.66837 -12.46875 -12.22948 -11.91834 -11.59994 -11.56494 -11.45596 -11.10373 -10.95624 -10.75718 -10.48324 -10.35587 -10.25694 -9.89724 -9.75205 -8.93827 -8.57337 -7.78447 -7.75807 -7.13988 -6.73677 -3.99039 1.66308 2.41280 3.03918 3.32818 3.33072 3.49853 3.52101 4.20009 4.29864 4.53444 4.80334 4.84809 4.90531 5.14252 5.26604 5.28713 5.32649 5.40998 5.58280 5.81407 5.96389 5.97698 6.02201 6.16252 6.22453 6.30809 6.35159 6.46782 6.67891 6.80623 7.00802 7.27899 7.56589 7.81826 8.15936 8.34315 8.46842 8.98357 9.13551 9.33993 10.49485 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.039602 B = 0.004996 C = 0.004832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.872368 B = 5602.815231 C = 5793.144806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 C 0.029 3.971 3 N -0.316 5.316 4 N -0.378 5.378 5 C 0.176 3.824 6 C -0.128 4.128 7 C -0.075 4.075 8 S -0.274 6.274 9 C -0.075 4.075 10 C -0.127 4.127 11 C -0.090 4.090 12 C -0.048 4.048 13 C -0.010 4.010 14 C -0.532 4.532 15 H 0.062 0.938 16 C 0.042 3.958 17 N -0.830 5.830 18 Si 1.058 2.942 19 H -0.280 1.280 20 H -0.283 1.283 21 H -0.283 1.283 22 H 0.071 0.929 23 H 0.039 0.961 24 H 0.070 0.930 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.107 0.893 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.044 0.956 35 H 0.038 0.962 36 H 0.070 0.930 37 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.046 6.532 -2.417 11.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.138 4.138 3 N -0.139 5.139 4 N -0.166 5.166 5 C 0.072 3.928 6 C -0.168 4.168 7 C -0.223 4.223 8 S -0.048 6.048 9 C -0.224 4.224 10 C -0.167 4.167 11 C -0.210 4.210 12 C -0.107 4.107 13 C -0.020 4.020 14 C -0.565 4.565 15 H 0.081 0.919 16 C -0.174 4.174 17 N -0.457 5.457 18 Si 0.885 3.115 19 H -0.206 1.206 20 H -0.209 1.209 21 H -0.209 1.209 22 H 0.089 0.911 23 H 0.058 0.942 24 H 0.088 0.912 25 H 0.103 0.897 26 H 0.104 0.896 27 H 0.097 0.903 28 H 0.102 0.898 29 H 0.125 0.875 30 H 0.102 0.898 31 H 0.125 0.875 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.089 0.911 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.998 8.070 -2.123 11.558 hybrid contribution 1.338 -1.272 -0.296 1.870 sum 9.336 6.797 -2.419 11.799 Atomic orbital electron populations 1.20039 0.88106 1.00433 1.02096 1.22462 0.95863 0.91391 1.04081 1.76376 0.86739 1.24100 1.26706 1.47238 1.03103 1.03313 1.62938 1.20678 0.87030 0.90669 0.94434 1.22074 0.96575 0.99661 0.98486 1.23444 1.00435 1.00020 0.98435 1.86764 1.94348 1.20743 1.02955 1.23440 1.00431 1.00239 0.98274 1.22069 0.96601 0.99493 0.98550 1.21010 0.96710 0.82985 1.20298 1.19816 0.92418 0.98415 1.00004 1.17818 0.88228 0.93768 1.02145 1.19414 1.09734 0.92192 1.35196 0.91950 1.26408 0.95890 1.02103 0.93049 1.70503 1.40359 1.17913 1.16961 0.83740 0.76126 0.75137 0.76515 1.20610 1.20854 1.20874 0.91070 0.94173 0.91165 0.89723 0.89583 0.90296 0.89813 0.87491 0.89834 0.87526 0.90398 0.89580 0.93739 0.94335 0.91072 0.90226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.12 8.55 36.01 0.31 -0.81 16 2 C 0.03 0.73 6.52 -81.84 -0.53 0.20 16 3 N -0.32 -7.58 12.30 34.00 0.42 -7.17 16 4 N -0.38 -8.14 3.22 -50.20 -0.16 -8.30 16 5 C 0.18 2.89 2.62 -68.36 -0.18 2.71 16 6 C -0.13 -1.91 5.27 -26.90 -0.14 -2.05 16 7 C -0.07 -0.87 6.45 37.21 0.24 -0.63 16 8 S -0.27 -3.40 22.33 -107.50 -2.40 -5.80 16 9 C -0.08 -0.87 6.45 37.21 0.24 -0.63 16 10 C -0.13 -1.86 5.26 -26.89 -0.14 -2.01 16 11 C -0.09 -2.10 7.06 -81.03 -0.57 -2.67 16 12 C -0.05 -0.93 9.75 36.01 0.35 -0.58 16 13 C -0.01 -0.26 5.18 -106.83 -0.55 -0.82 16 14 C -0.53 -14.33 8.82 -37.76 -0.33 -14.66 16 15 H 0.06 1.68 7.97 -52.49 -0.42 1.26 16 16 C 0.04 1.08 3.89 -17.35 -0.07 1.02 16 17 N -0.83 -22.37 11.33 55.54 0.63 -21.74 16 18 Si 1.06 22.61 30.01 -169.99 -5.10 17.50 16 19 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 20 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 21 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 22 H 0.07 1.69 6.93 -51.93 -0.36 1.33 16 23 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.07 1.68 7.03 -51.93 -0.37 1.32 16 25 H 0.08 1.29 6.57 -51.93 -0.34 0.95 16 26 H 0.09 1.41 8.06 -51.93 -0.42 0.99 16 27 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 29 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.09 1.39 8.06 -51.93 -0.42 0.97 16 34 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.04 0.64 7.10 -51.93 -0.37 0.27 16 36 H 0.07 1.43 7.97 -51.93 -0.41 1.02 16 37 H 0.29 8.05 6.89 -40.82 -0.28 7.77 16 LS Contribution 308.05 15.07 4.64 4.64 Total: -1.00 -28.75 308.05 -8.92 -37.66 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -5.56 Total: 4.13 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: -1.38 Total: -20.93 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: 0.89 Total: -37.21 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.10 Total: 17.50 kcal Atomic # 16 Polarization: -3.40 SS G_CDS: -2.40 Total: -5.80 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.75 -8.92 -37.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258179980.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.989 kcal (2) G-P(sol) polarization free energy of solvation -28.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds