Wall clock time and date at job start Mon Mar 30 2020 06:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30315 * 125.97428 * 2 1 4 4 N 1.39877 * 109.22812 * 179.97438 * 3 2 1 5 5 C 1.46504 * 125.67393 * 180.02562 * 4 3 2 6 6 C 1.52580 * 109.22744 * 61.21408 * 5 4 3 7 7 C 1.53093 * 109.95781 * 169.00068 * 6 5 4 8 8 S 1.81750 * 108.83918 * 63.02404 * 7 6 5 9 9 C 1.81742 * 102.22267 * 306.73604 * 8 7 6 10 10 C 1.52582 * 109.22465 * 299.97718 * 5 4 3 11 11 C 1.34504 * 108.65008 * 359.75414 * 4 3 2 12 12 C 1.50700 * 126.41003 * 180.26773 * 11 4 3 13 13 C 1.39282 * 107.18607 * 0.38874 * 11 4 3 14 14 C 1.41593 * 126.55950 * 179.86870 * 13 11 4 15 15 H 1.08000 * 119.99723 * 326.99479 * 14 13 11 16 16 C 1.39698 * 119.99879 * 146.98347 * 14 13 11 17 17 N 1.31019 * 120.00146 * 332.76325 * 16 14 13 18 18 Si 1.86797 * 119.99531 * 152.76371 * 16 14 13 19 19 H 1.48502 * 109.46971 * 269.99780 * 18 16 14 20 20 H 1.48494 * 109.47485 * 30.00041 * 18 16 14 21 21 H 1.48503 * 109.46788 * 150.00192 * 18 16 14 22 22 H 1.08994 * 109.46973 * 269.78405 * 1 2 3 23 23 H 1.09003 * 109.47104 * 29.78075 * 1 2 3 24 24 H 1.08999 * 109.47326 * 149.78028 * 1 2 3 25 25 H 1.09004 * 109.22080 * 180.57617 * 5 4 3 26 26 H 1.08999 * 109.38756 * 289.15254 * 6 5 4 27 27 H 1.09007 * 109.38648 * 48.85597 * 6 5 4 28 28 H 1.09006 * 109.57486 * 303.21876 * 7 6 5 29 29 H 1.08992 * 109.57714 * 182.83187 * 7 6 5 30 30 H 1.09003 * 109.57470 * 293.45906 * 9 8 7 31 31 H 1.08998 * 109.68287 * 173.13307 * 9 8 7 32 32 H 1.09001 * 109.39196 * 311.14389 * 10 5 4 33 33 H 1.08997 * 109.38986 * 70.85023 * 10 5 4 34 34 H 1.09006 * 109.46793 * 270.17705 * 12 11 4 35 35 H 1.09005 * 109.46961 * 30.16743 * 12 11 4 36 36 H 1.08990 * 109.47490 * 150.17422 * 12 11 4 37 37 H 0.97003 * 120.00079 * 353.13171 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2725 1.0546 0.0000 4 7 3.6120 0.6516 0.0006 5 6 4.7730 1.5451 0.0013 6 6 4.7475 2.4011 1.2641 7 6 6.0793 3.1395 1.4218 8 16 6.2934 4.2705 0.0153 9 6 6.0628 3.1633 -1.4073 10 6 4.7328 2.4222 -1.2466 11 6 3.6567 -0.6927 0.0064 12 6 4.8985 -1.5464 0.0147 13 6 2.3405 -1.1483 0.0005 14 6 1.9154 -2.4989 0.0010 15 1 2.5042 -3.2504 -0.5039 16 6 0.7347 -2.8593 0.6549 17 7 0.3061 -2.1515 1.6707 18 14 -0.2329 -4.3505 0.0808 19 1 -1.2215 -3.9337 -0.9459 20 1 0.6974 -5.3490 -0.5043 21 1 -0.9440 -4.9540 1.2364 22 1 -0.3633 -0.0039 1.0276 23 1 -0.3633 0.8920 -0.5104 24 1 -0.3634 -0.8880 -0.5172 25 1 5.6851 0.9483 -0.0087 26 1 3.9375 3.1269 1.1929 27 1 4.5834 1.7616 2.1315 28 1 6.8968 2.4187 1.4386 29 1 6.0732 3.7093 2.3509 30 1 6.8800 2.4430 -1.4457 31 1 6.0467 3.7468 -2.3278 32 1 4.5585 1.7974 -2.1226 33 1 3.9237 3.1466 -1.1537 34 1 5.2036 -1.7539 -1.0110 35 1 5.6993 -1.0178 0.5320 36 1 4.6910 -2.4847 0.5290 37 1 0.8564 -1.4391 2.0321 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258179980.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:26 Heat of formation + Delta-G solvation = 33.299321 kcal Electronic energy + Delta-G solvation = -18607.999977 eV Core-core repulsion = 15897.378702 eV Total energy + Delta-G solvation = -2710.621274 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.66252 -38.23321 -35.55790 -33.66374 -32.68873 -31.78351 -29.63928 -28.51606 -26.70863 -25.25979 -24.19057 -22.15712 -21.29739 -19.66598 -18.95384 -17.83274 -17.34331 -16.15777 -15.69385 -15.52807 -15.12623 -14.83302 -14.76351 -14.71705 -14.16795 -13.95460 -13.93498 -13.86033 -13.61280 -13.40892 -13.11097 -12.86550 -12.56429 -12.47838 -12.45932 -12.06879 -11.92178 -11.69139 -11.55609 -10.83782 -10.80269 -10.49983 -9.56084 -9.08744 -8.75750 -8.72221 -6.00046 0.71119 1.22521 1.45940 1.58926 1.60818 1.84210 1.92132 2.27932 2.52555 3.28131 3.32057 3.67692 3.70698 3.81499 4.04457 4.10110 4.19864 4.23763 4.29172 4.44211 4.53845 4.65163 4.67299 4.70248 4.76774 4.80771 4.90653 4.96631 4.98644 5.13066 5.14492 5.38661 5.70298 5.88158 6.13899 6.30182 6.68674 7.02076 7.22300 7.42005 8.45894 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.039602 B = 0.004996 C = 0.004832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.872368 B = 5602.815231 C = 5793.144806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 C 0.002 3.998 3 N -0.330 5.330 4 N -0.366 5.366 5 C 0.163 3.837 6 C -0.120 4.120 7 C -0.064 4.064 8 S -0.287 6.287 9 C -0.064 4.064 10 C -0.118 4.118 11 C -0.077 4.077 12 C -0.046 4.046 13 C -0.061 4.061 14 C -0.557 4.557 15 H 0.052 0.948 16 C 0.007 3.993 17 N -0.848 5.848 18 Si 1.106 2.894 19 H -0.270 1.270 20 H -0.270 1.270 21 H -0.280 1.280 22 H 0.060 0.940 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.108 0.892 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.105 0.895 29 H 0.122 0.878 30 H 0.105 0.895 31 H 0.124 0.876 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.208 6.896 -3.066 13.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.163 4.163 3 N -0.155 5.155 4 N -0.154 5.154 5 C 0.061 3.939 6 C -0.159 4.159 7 C -0.213 4.213 8 S -0.061 6.061 9 C -0.213 4.213 10 C -0.158 4.158 11 C -0.200 4.200 12 C -0.105 4.105 13 C -0.071 4.071 14 C -0.590 4.590 15 H 0.070 0.930 16 C -0.204 4.204 17 N -0.475 5.475 18 Si 0.927 3.073 19 H -0.195 1.195 20 H -0.195 1.195 21 H -0.206 1.206 22 H 0.079 0.921 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.126 0.874 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.123 0.877 29 H 0.141 0.859 30 H 0.123 0.877 31 H 0.142 0.858 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.180 8.476 -2.778 13.535 hybrid contribution 0.857 -1.249 -0.110 1.519 sum 11.037 7.227 -2.888 13.505 Atomic orbital electron populations 1.19886 0.87552 1.00589 1.01410 1.22680 0.96726 0.91578 1.05315 1.76315 0.87903 1.23855 1.27397 1.47736 1.03645 1.03621 1.60357 1.21218 0.85691 0.90863 0.96138 1.21941 0.98134 0.98885 0.96989 1.23418 0.98762 1.00144 0.98929 1.86916 1.94097 1.21497 1.03597 1.23428 0.98837 1.00359 0.98640 1.21929 0.98106 0.98718 0.97029 1.21719 0.97491 0.84229 1.16611 1.19912 0.91459 0.97532 1.01577 1.18211 0.89922 0.94192 1.04744 1.19503 1.10929 0.92468 1.36146 0.93017 1.27617 0.96606 1.03887 0.92261 1.70638 1.40187 1.18490 1.18223 0.83118 0.75351 0.72427 0.76375 1.19493 1.19514 1.20598 0.92128 0.92339 0.92440 0.87450 0.91592 0.91688 0.87680 0.85948 0.87683 0.85781 0.91301 0.91543 0.91761 0.90934 0.92126 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.72 8.55 71.24 0.61 -1.11 16 2 C 0.00 0.08 6.52 43.69 0.28 0.37 16 3 N -0.33 -16.03 12.30 -46.35 -0.57 -16.60 16 4 N -0.37 -15.51 3.22 -312.72 -1.01 -16.52 16 5 C 0.16 4.99 2.62 44.71 0.12 5.11 16 6 C -0.12 -3.36 5.27 30.49 0.16 -3.20 16 7 C -0.06 -1.30 6.45 72.01 0.46 -0.83 16 8 S -0.29 -6.26 22.33 -56.49 -1.26 -7.52 16 9 C -0.06 -1.26 6.45 72.02 0.46 -0.79 16 10 C -0.12 -3.21 5.26 30.49 0.16 -3.05 16 11 C -0.08 -3.56 7.06 42.40 0.30 -3.27 16 12 C -0.05 -1.70 9.75 71.24 0.69 -1.00 16 13 C -0.06 -3.28 5.18 -21.30 -0.11 -3.39 16 14 C -0.56 -30.75 8.82 23.45 0.21 -30.54 16 15 H 0.05 2.85 7.97 -2.91 -0.02 2.83 16 16 C 0.01 0.38 3.89 85.17 0.33 0.71 16 17 N -0.85 -47.18 11.33 21.79 0.25 -46.93 16 18 Si 1.11 46.08 30.01 68.60 2.06 48.14 16 19 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 20 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 21 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 22 H 0.06 3.00 6.93 -2.39 -0.02 2.99 16 23 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 24 H 0.06 2.85 7.03 -2.39 -0.02 2.84 16 25 H 0.11 2.84 6.57 -2.38 -0.02 2.82 16 26 H 0.07 2.12 8.06 -2.39 -0.02 2.10 16 27 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 28 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 29 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.07 2.08 8.06 -2.39 -0.02 2.06 16 34 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 35 H 0.07 2.14 7.10 -2.38 -0.02 2.12 16 36 H 0.06 2.37 7.97 -2.39 -0.02 2.35 16 37 H 0.27 15.70 6.89 -92.71 -0.64 15.06 16 Total: -1.00 -64.05 308.05 4.33 -59.73 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 1.18 Total: 20.71 kcal Atomic # 6 Polarization: -44.68 SS G_CDS: 3.68 Total: -40.99 kcal Atomic # 7 Polarization: -78.73 SS G_CDS: -1.33 Total: -80.06 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.06 Total: 48.14 kcal Atomic # 16 Polarization: -6.26 SS G_CDS: -1.26 Total: -7.52 kcal Total: -64.05 4.33 -59.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258179980.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.025 kcal (2) G-P(sol) polarization free energy of solvation -64.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds