Wall clock time and date at job start Mon Mar 30 2020 06:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30317 * 125.97554 * 2 1 4 4 N 1.39878 * 109.23381 * 179.97438 * 3 2 1 5 5 C 1.46498 * 125.67515 * 179.97438 * 4 3 2 6 6 H 1.09005 * 109.38203 * 180.22542 * 5 4 3 7 7 C 1.52581 * 109.38862 * 300.02190 * 5 4 3 8 8 C 1.52582 * 110.68915 * 190.74824 * 7 5 4 9 9 C 1.53107 * 109.94792 * 289.26337 * 8 7 5 10 10 S 1.81749 * 108.80697 * 63.08824 * 9 8 7 11 11 C 1.53087 * 109.31345 * 60.47128 * 5 4 3 12 12 C 1.34501 * 108.64122 * 0.24505 * 4 3 2 13 13 C 1.50700 * 126.40189 * 179.72066 * 12 4 3 14 14 C 1.39275 * 107.19472 * 359.62082 * 12 4 3 15 15 C 1.41596 * 126.56174 * 180.14514 * 14 12 4 16 16 H 1.08000 * 119.99585 * 314.46523 * 15 14 12 17 17 C 1.39695 * 120.00221 * 134.46344 * 15 14 12 18 18 N 1.31019 * 120.00155 * 153.24101 * 17 15 14 19 19 Si 1.86800 * 119.99853 * 333.24576 * 17 15 14 20 20 H 1.48500 * 109.47391 * 95.47438 * 19 17 15 21 21 H 1.48508 * 109.46940 * 215.47395 * 19 17 15 22 22 H 1.48496 * 109.47357 * 335.47045 * 19 17 15 23 23 H 1.09001 * 109.47165 * 83.88342 * 1 2 3 24 24 H 1.09004 * 109.46898 * 203.87681 * 1 2 3 25 25 H 1.08991 * 109.47336 * 323.87796 * 1 2 3 26 26 H 1.09000 * 109.22732 * 311.04991 * 7 5 4 27 27 H 1.09004 * 109.22581 * 70.45402 * 7 5 4 28 28 H 1.08997 * 109.39355 * 49.45679 * 8 7 5 29 29 H 1.09005 * 109.38651 * 169.15785 * 8 7 5 30 30 H 1.09001 * 109.61356 * 303.27863 * 9 8 7 31 31 H 1.09006 * 109.57672 * 182.87633 * 9 8 7 32 32 H 1.09007 * 109.57779 * 296.68400 * 11 5 4 33 33 H 1.09006 * 109.57938 * 56.93431 * 11 5 4 34 34 H 1.08995 * 109.47514 * 89.99796 * 13 12 4 35 35 H 1.09007 * 109.47378 * 210.00260 * 13 12 4 36 36 H 1.09003 * 109.47453 * 330.00080 * 13 12 4 37 37 H 0.97005 * 120.00514 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2726 1.0546 0.0000 4 7 3.6121 0.6517 0.0006 5 6 4.7730 1.5452 0.0002 6 1 5.6869 0.9510 -0.0032 7 6 4.7355 2.4239 -1.2465 8 6 6.0532 3.1742 -1.4171 9 6 6.1816 4.2557 -0.3410 10 16 6.2320 3.4559 1.2903 11 6 4.7397 2.4191 1.2567 12 6 3.6567 -0.6926 -0.0045 13 6 4.8986 -1.5462 -0.0117 14 6 2.3406 -1.1482 0.0005 15 6 1.9156 -2.4989 0.0006 16 1 2.3757 -3.2097 -0.6697 17 6 0.9012 -2.9119 0.8678 18 7 0.1499 -3.9387 0.5552 19 14 0.6160 -2.0001 2.4730 20 1 -0.4563 -0.9901 2.2849 21 1 0.2076 -2.9656 3.5249 22 1 1.8699 -1.3199 2.8855 23 1 -0.3633 0.1095 -1.0218 24 1 -0.3633 -0.9398 0.4160 25 1 -0.3633 0.8300 0.6058 26 1 4.5630 1.7978 -2.1219 27 1 3.9221 3.1437 -1.1541 28 1 6.8830 2.4732 -1.3275 29 1 6.0795 3.6398 -2.4024 30 1 5.3242 4.9267 -0.3925 31 1 7.1001 4.8210 -0.4991 32 1 3.8540 3.0543 1.2364 33 1 4.7136 1.7845 2.1425 34 1 5.2014 -1.7557 1.0141 35 1 4.6923 -2.4836 -0.5284 36 1 5.7005 -1.0167 -0.5262 37 1 -0.5548 -4.2253 1.1571 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258234422.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:40 Heat of formation + Delta-G solvation = 57.891216 kcal Electronic energy + Delta-G solvation = -18617.506671 eV Core-core repulsion = 15907.951781 eV Total energy + Delta-G solvation = -2709.554890 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.04612 -36.93364 -33.56322 -32.61192 -31.36472 -29.95179 -27.63678 -27.33818 -26.35918 -24.01329 -22.45306 -20.87504 -19.15810 -18.09451 -17.11969 -16.65966 -15.29945 -15.08325 -14.91027 -14.33084 -14.25725 -13.51799 -13.20763 -13.03639 -12.91049 -12.72443 -12.60032 -12.27107 -11.91217 -11.58513 -11.54667 -11.50533 -11.33640 -11.10468 -10.88857 -10.71754 -10.49225 -10.14400 -9.97024 -9.85116 -9.15614 -8.73395 -8.03930 -7.75784 -7.01031 -6.48365 -4.01861 1.62101 2.31978 2.86888 3.24438 3.32946 3.44363 3.51143 3.96682 4.28203 4.46769 4.61460 4.71187 4.87012 5.06264 5.19369 5.24173 5.32775 5.50657 5.57440 5.71131 5.80210 5.85400 5.94029 5.96573 6.05974 6.17245 6.28279 6.35840 6.50170 6.65311 6.75227 7.15024 7.39837 7.51007 7.81733 8.24444 8.64413 8.94053 9.00313 9.28029 10.59245 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.031492 B = 0.005727 C = 0.005651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.890571 B = 4887.688093 C = 4953.976176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.031 3.969 3 N -0.318 5.318 4 N -0.377 5.377 5 C 0.180 3.820 6 H 0.102 0.898 7 C -0.136 4.136 8 C -0.118 4.118 9 C -0.084 4.084 10 S -0.262 6.262 11 C -0.085 4.085 12 C -0.044 4.044 13 C -0.056 4.056 14 C -0.027 4.027 15 C -0.467 4.467 16 H 0.080 0.920 17 C 0.098 3.902 18 N -0.843 5.843 19 Si 0.870 3.130 20 H -0.263 1.263 21 H -0.289 1.289 22 H -0.262 1.262 23 H 0.063 0.937 24 H 0.081 0.919 25 H 0.051 0.949 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.107 0.893 34 H 0.056 0.944 35 H 0.076 0.924 36 H 0.042 0.958 37 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.511 12.096 -1.384 15.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.135 4.135 3 N -0.142 5.142 4 N -0.164 5.164 5 C 0.074 3.926 6 H 0.120 0.880 7 C -0.174 4.174 8 C -0.157 4.157 9 C -0.232 4.232 10 S -0.036 6.036 11 C -0.234 4.234 12 C -0.166 4.166 13 C -0.115 4.115 14 C -0.037 4.037 15 C -0.501 4.501 16 H 0.098 0.902 17 C -0.114 4.114 18 N -0.473 5.473 19 Si 0.696 3.304 20 H -0.189 1.189 21 H -0.216 1.216 22 H -0.186 1.186 23 H 0.082 0.918 24 H 0.100 0.900 25 H 0.070 0.930 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.123 0.877 32 H 0.113 0.887 33 H 0.125 0.875 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.060 0.940 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.228 13.351 -0.508 16.826 hybrid contribution -1.094 -0.627 -0.079 1.264 sum 9.134 12.724 -0.587 15.674 Atomic orbital electron populations 1.20220 0.88440 1.02309 1.01497 1.22595 0.95832 0.91889 1.03231 1.76409 0.86694 1.23964 1.27097 1.47534 1.03422 1.03630 1.61863 1.21086 0.87275 0.90601 0.93609 0.88036 1.21878 0.97823 0.99448 0.98289 1.21742 0.98327 0.97205 0.98447 1.23497 1.05906 0.99991 0.93779 1.86833 1.36395 1.56224 1.24164 1.23874 0.97662 0.99919 1.01902 1.21461 0.97277 0.82932 1.14916 1.19952 0.92009 0.98411 1.01134 1.17875 0.88096 0.94036 1.03674 1.18156 1.18353 0.92288 1.21320 0.90200 1.25498 0.93210 0.94274 0.98378 1.69878 1.15501 1.26377 1.35551 0.87125 0.80066 0.79973 0.83264 1.18856 1.21594 1.18620 0.91848 0.90032 0.93030 0.90415 0.90688 0.90438 0.90427 0.89715 0.87728 0.88722 0.87481 0.92501 0.90486 0.93957 0.91740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.45 9.03 36.01 0.33 -1.12 16 2 C 0.03 0.74 6.25 -81.84 -0.51 0.23 16 3 N -0.32 -7.21 12.30 34.00 0.42 -6.79 16 4 N -0.38 -7.72 3.24 -49.95 -0.16 -7.88 16 5 C 0.18 2.81 2.74 -68.10 -0.19 2.62 16 6 H 0.10 1.50 6.54 -51.93 -0.34 1.16 16 7 C -0.14 -1.82 5.13 -27.16 -0.14 -1.96 16 8 C -0.12 -1.17 5.75 -26.89 -0.15 -1.32 16 9 C -0.08 -0.81 6.46 37.21 0.24 -0.57 16 10 S -0.26 -3.29 22.33 -107.50 -2.40 -5.69 16 11 C -0.08 -1.25 5.98 37.20 0.22 -1.03 16 12 C -0.04 -0.98 7.06 -81.04 -0.57 -1.55 16 13 C -0.06 -1.04 9.76 36.01 0.35 -0.69 16 14 C -0.03 -0.67 4.62 -106.84 -0.49 -1.17 16 15 C -0.47 -12.86 9.30 -37.76 -0.35 -13.21 16 16 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 17 C 0.10 2.66 4.45 -17.35 -0.08 2.58 16 18 N -0.84 -23.54 13.94 55.54 0.77 -22.77 16 19 Si 0.87 21.19 24.94 -169.99 -4.24 16.95 16 20 H -0.26 -6.08 5.99 56.52 0.34 -5.74 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 22 H -0.26 -6.69 7.11 56.52 0.40 -6.28 16 23 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 24 H 0.08 1.91 3.97 -51.93 -0.21 1.70 16 25 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 27 H 0.07 1.07 8.08 -51.93 -0.42 0.65 16 28 H 0.08 0.75 8.05 -51.93 -0.42 0.33 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.10 0.83 8.14 -51.92 -0.42 0.40 16 32 H 0.09 1.49 8.14 -51.92 -0.42 1.06 16 33 H 0.11 1.71 8.14 -51.92 -0.42 1.29 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.08 1.45 7.98 -51.93 -0.41 1.04 16 36 H 0.04 0.65 7.08 -51.93 -0.37 0.28 16 37 H 0.27 7.03 8.30 -40.82 -0.34 6.69 16 LS Contribution 304.81 15.07 4.59 4.59 Total: -1.00 -29.49 304.81 -7.95 -37.44 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -5.59 Total: 1.33 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: -1.35 Total: -17.19 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 1.03 Total: -37.43 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.24 Total: 16.95 kcal Atomic # 16 Polarization: -3.29 SS G_CDS: -2.40 Total: -5.69 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.49 -7.95 -37.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258234422.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.335 kcal (2) G-P(sol) polarization free energy of solvation -29.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds