Wall clock time and date at job start Mon Mar 30 2020 06:24:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50705 * 1
3 3 N 1.30317 * 125.97554 * 2 1
4 4 N 1.39878 * 109.23381 * 179.97438 * 3 2 1
5 5 C 1.46498 * 125.67515 * 179.97438 * 4 3 2
6 6 H 1.09005 * 109.38203 * 180.22542 * 5 4 3
7 7 C 1.52581 * 109.38862 * 300.02190 * 5 4 3
8 8 C 1.52582 * 110.68915 * 190.74824 * 7 5 4
9 9 C 1.53107 * 109.94792 * 289.26337 * 8 7 5
10 10 S 1.81749 * 108.80697 * 63.08824 * 9 8 7
11 11 C 1.53087 * 109.31345 * 60.47128 * 5 4 3
12 12 C 1.34501 * 108.64122 * 0.24505 * 4 3 2
13 13 C 1.50700 * 126.40189 * 179.72066 * 12 4 3
14 14 C 1.39275 * 107.19472 * 359.62082 * 12 4 3
15 15 C 1.41596 * 126.56174 * 180.14514 * 14 12 4
16 16 H 1.08000 * 119.99585 * 314.46523 * 15 14 12
17 17 C 1.39695 * 120.00221 * 134.46344 * 15 14 12
18 18 N 1.31019 * 120.00155 * 153.24101 * 17 15 14
19 19 Si 1.86800 * 119.99853 * 333.24576 * 17 15 14
20 20 H 1.48500 * 109.47391 * 95.47438 * 19 17 15
21 21 H 1.48508 * 109.46940 * 215.47395 * 19 17 15
22 22 H 1.48496 * 109.47357 * 335.47045 * 19 17 15
23 23 H 1.09001 * 109.47165 * 83.88342 * 1 2 3
24 24 H 1.09004 * 109.46898 * 203.87681 * 1 2 3
25 25 H 1.08991 * 109.47336 * 323.87796 * 1 2 3
26 26 H 1.09000 * 109.22732 * 311.04991 * 7 5 4
27 27 H 1.09004 * 109.22581 * 70.45402 * 7 5 4
28 28 H 1.08997 * 109.39355 * 49.45679 * 8 7 5
29 29 H 1.09005 * 109.38651 * 169.15785 * 8 7 5
30 30 H 1.09001 * 109.61356 * 303.27863 * 9 8 7
31 31 H 1.09006 * 109.57672 * 182.87633 * 9 8 7
32 32 H 1.09007 * 109.57779 * 296.68400 * 11 5 4
33 33 H 1.09006 * 109.57938 * 56.93431 * 11 5 4
34 34 H 1.08995 * 109.47514 * 89.99796 * 13 12 4
35 35 H 1.09007 * 109.47378 * 210.00260 * 13 12 4
36 36 H 1.09003 * 109.47453 * 330.00080 * 13 12 4
37 37 H 0.97005 * 120.00514 * 180.02562 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 7 2.2726 1.0546 0.0000
4 7 3.6121 0.6517 0.0006
5 6 4.7730 1.5452 0.0002
6 1 5.6869 0.9510 -0.0032
7 6 4.7355 2.4239 -1.2465
8 6 6.0532 3.1742 -1.4171
9 6 6.1816 4.2557 -0.3410
10 16 6.2320 3.4559 1.2903
11 6 4.7397 2.4191 1.2567
12 6 3.6567 -0.6926 -0.0045
13 6 4.8986 -1.5462 -0.0117
14 6 2.3406 -1.1482 0.0005
15 6 1.9156 -2.4989 0.0006
16 1 2.3757 -3.2097 -0.6697
17 6 0.9012 -2.9119 0.8678
18 7 0.1499 -3.9387 0.5552
19 14 0.6160 -2.0001 2.4730
20 1 -0.4563 -0.9901 2.2849
21 1 0.2076 -2.9656 3.5249
22 1 1.8699 -1.3199 2.8855
23 1 -0.3633 0.1095 -1.0218
24 1 -0.3633 -0.9398 0.4160
25 1 -0.3633 0.8300 0.6058
26 1 4.5630 1.7978 -2.1219
27 1 3.9221 3.1437 -1.1541
28 1 6.8830 2.4732 -1.3275
29 1 6.0795 3.6398 -2.4024
30 1 5.3242 4.9267 -0.3925
31 1 7.1001 4.8210 -0.4991
32 1 3.8540 3.0543 1.2364
33 1 4.7136 1.7845 2.1425
34 1 5.2014 -1.7557 1.0141
35 1 4.6923 -2.4836 -0.5284
36 1 5.7005 -1.0167 -0.5262
37 1 -0.5548 -4.2253 1.1571
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000258234422.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:24:40
Heat of formation + Delta-G solvation = 57.891216 kcal
Electronic energy + Delta-G solvation = -18617.506671 eV
Core-core repulsion = 15907.951781 eV
Total energy + Delta-G solvation = -2709.554890 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 266.115 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-40.04612 -36.93364 -33.56322 -32.61192 -31.36472 -29.95179 -27.63678 -27.33818
-26.35918 -24.01329 -22.45306 -20.87504 -19.15810 -18.09451 -17.11969 -16.65966
-15.29945 -15.08325 -14.91027 -14.33084 -14.25725 -13.51799 -13.20763 -13.03639
-12.91049 -12.72443 -12.60032 -12.27107 -11.91217 -11.58513 -11.54667 -11.50533
-11.33640 -11.10468 -10.88857 -10.71754 -10.49225 -10.14400 -9.97024 -9.85116
-9.15614 -8.73395 -8.03930 -7.75784 -7.01031 -6.48365 -4.01861 1.62101
2.31978 2.86888 3.24438 3.32946 3.44363 3.51143 3.96682 4.28203
4.46769 4.61460 4.71187 4.87012 5.06264 5.19369 5.24173 5.32775
5.50657 5.57440 5.71131 5.80210 5.85400 5.94029 5.96573 6.05974
6.17245 6.28279 6.35840 6.50170 6.65311 6.75227 7.15024 7.39837
7.51007 7.81733 8.24444 8.64413 8.94053 9.00313 9.28029 10.59245
Molecular weight = 266.11amu
Principal moments of inertia in cm(-1)
A = 0.031492 B = 0.005727 C = 0.005651
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 888.890571 B = 4887.688093 C = 4953.976176
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 C 0.031 3.969
3 N -0.318 5.318
4 N -0.377 5.377
5 C 0.180 3.820
6 H 0.102 0.898
7 C -0.136 4.136
8 C -0.118 4.118
9 C -0.084 4.084
10 S -0.262 6.262
11 C -0.085 4.085
12 C -0.044 4.044
13 C -0.056 4.056
14 C -0.027 4.027
15 C -0.467 4.467
16 H 0.080 0.920
17 C 0.098 3.902
18 N -0.843 5.843
19 Si 0.870 3.130
20 H -0.263 1.263
21 H -0.289 1.289
22 H -0.262 1.262
23 H 0.063 0.937
24 H 0.081 0.919
25 H 0.051 0.949
26 H 0.077 0.923
27 H 0.074 0.926
28 H 0.077 0.923
29 H 0.077 0.923
30 H 0.084 0.916
31 H 0.104 0.896
32 H 0.094 0.906
33 H 0.107 0.893
34 H 0.056 0.944
35 H 0.076 0.924
36 H 0.042 0.958
37 H 0.272 0.728
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.511 12.096 -1.384 15.449
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.125 4.125
2 C -0.135 4.135
3 N -0.142 5.142
4 N -0.164 5.164
5 C 0.074 3.926
6 H 0.120 0.880
7 C -0.174 4.174
8 C -0.157 4.157
9 C -0.232 4.232
10 S -0.036 6.036
11 C -0.234 4.234
12 C -0.166 4.166
13 C -0.115 4.115
14 C -0.037 4.037
15 C -0.501 4.501
16 H 0.098 0.902
17 C -0.114 4.114
18 N -0.473 5.473
19 Si 0.696 3.304
20 H -0.189 1.189
21 H -0.216 1.216
22 H -0.186 1.186
23 H 0.082 0.918
24 H 0.100 0.900
25 H 0.070 0.930
26 H 0.096 0.904
27 H 0.093 0.907
28 H 0.096 0.904
29 H 0.096 0.904
30 H 0.103 0.897
31 H 0.123 0.877
32 H 0.113 0.887
33 H 0.125 0.875
34 H 0.075 0.925
35 H 0.095 0.905
36 H 0.060 0.940
37 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges 10.228 13.351 -0.508 16.826
hybrid contribution -1.094 -0.627 -0.079 1.264
sum 9.134 12.724 -0.587 15.674
Atomic orbital electron populations
1.20220 0.88440 1.02309 1.01497 1.22595 0.95832 0.91889 1.03231
1.76409 0.86694 1.23964 1.27097 1.47534 1.03422 1.03630 1.61863
1.21086 0.87275 0.90601 0.93609 0.88036 1.21878 0.97823 0.99448
0.98289 1.21742 0.98327 0.97205 0.98447 1.23497 1.05906 0.99991
0.93779 1.86833 1.36395 1.56224 1.24164 1.23874 0.97662 0.99919
1.01902 1.21461 0.97277 0.82932 1.14916 1.19952 0.92009 0.98411
1.01134 1.17875 0.88096 0.94036 1.03674 1.18156 1.18353 0.92288
1.21320 0.90200 1.25498 0.93210 0.94274 0.98378 1.69878 1.15501
1.26377 1.35551 0.87125 0.80066 0.79973 0.83264 1.18856 1.21594
1.18620 0.91848 0.90032 0.93030 0.90415 0.90688 0.90438 0.90427
0.89715 0.87728 0.88722 0.87481 0.92501 0.90486 0.93957 0.91740
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -1.45 9.03 36.01 0.33 -1.12 16
2 C 0.03 0.74 6.25 -81.84 -0.51 0.23 16
3 N -0.32 -7.21 12.30 34.00 0.42 -6.79 16
4 N -0.38 -7.72 3.24 -49.95 -0.16 -7.88 16
5 C 0.18 2.81 2.74 -68.10 -0.19 2.62 16
6 H 0.10 1.50 6.54 -51.93 -0.34 1.16 16
7 C -0.14 -1.82 5.13 -27.16 -0.14 -1.96 16
8 C -0.12 -1.17 5.75 -26.89 -0.15 -1.32 16
9 C -0.08 -0.81 6.46 37.21 0.24 -0.57 16
10 S -0.26 -3.29 22.33 -107.50 -2.40 -5.69 16
11 C -0.08 -1.25 5.98 37.20 0.22 -1.03 16
12 C -0.04 -0.98 7.06 -81.04 -0.57 -1.55 16
13 C -0.06 -1.04 9.76 36.01 0.35 -0.69 16
14 C -0.03 -0.67 4.62 -106.84 -0.49 -1.17 16
15 C -0.47 -12.86 9.30 -37.76 -0.35 -13.21 16
16 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16
17 C 0.10 2.66 4.45 -17.35 -0.08 2.58 16
18 N -0.84 -23.54 13.94 55.54 0.77 -22.77 16
19 Si 0.87 21.19 24.94 -169.99 -4.24 16.95 16
20 H -0.26 -6.08 5.99 56.52 0.34 -5.74 16
21 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16
22 H -0.26 -6.69 7.11 56.52 0.40 -6.28 16
23 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16
24 H 0.08 1.91 3.97 -51.93 -0.21 1.70 16
25 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16
26 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16
27 H 0.07 1.07 8.08 -51.93 -0.42 0.65 16
28 H 0.08 0.75 8.05 -51.93 -0.42 0.33 16
29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16
30 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16
31 H 0.10 0.83 8.14 -51.92 -0.42 0.40 16
32 H 0.09 1.49 8.14 -51.92 -0.42 1.06 16
33 H 0.11 1.71 8.14 -51.92 -0.42 1.29 16
34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16
35 H 0.08 1.45 7.98 -51.93 -0.41 1.04 16
36 H 0.04 0.65 7.08 -51.93 -0.37 0.28 16
37 H 0.27 7.03 8.30 -40.82 -0.34 6.69 16
LS Contribution 304.81 15.07 4.59 4.59
Total: -1.00 -29.49 304.81 -7.95 -37.44
By element:
Atomic # 1 Polarization: 6.92 SS G_CDS: -5.59 Total: 1.33 kcal
Atomic # 6 Polarization: -15.85 SS G_CDS: -1.35 Total: -17.19 kcal
Atomic # 7 Polarization: -38.46 SS G_CDS: 1.03 Total: -37.43 kcal
Atomic # 14 Polarization: 21.19 SS G_CDS: -4.24 Total: 16.95 kcal
Atomic # 16 Polarization: -3.29 SS G_CDS: -2.40 Total: -5.69 kcal
Total LS contribution 4.59 Total: 4.59 kcal
Total: -29.49 -7.95 -37.44 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000258234422.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 95.335 kcal
(2) G-P(sol) polarization free energy of solvation -29.492 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.844 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.952 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.444 kcal
(6) G-S(sol) free energy of system = (1) + (5) 57.891 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds