Wall clock time and date at job start Mon Mar 30 2020 06:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30317 * 125.97554 * 2 1 4 4 N 1.39878 * 109.23381 * 179.97438 * 3 2 1 5 5 C 1.46498 * 125.67515 * 179.97438 * 4 3 2 6 6 H 1.09005 * 109.38203 * 180.22542 * 5 4 3 7 7 C 1.52581 * 109.38862 * 300.02190 * 5 4 3 8 8 C 1.52582 * 110.68915 * 190.74824 * 7 5 4 9 9 C 1.53107 * 109.94792 * 289.26337 * 8 7 5 10 10 S 1.81749 * 108.80697 * 63.08824 * 9 8 7 11 11 C 1.53087 * 109.31345 * 60.47128 * 5 4 3 12 12 C 1.34501 * 108.64122 * 0.24505 * 4 3 2 13 13 C 1.50700 * 126.40189 * 179.72066 * 12 4 3 14 14 C 1.39275 * 107.19472 * 359.62082 * 12 4 3 15 15 C 1.41596 * 126.56174 * 180.14514 * 14 12 4 16 16 H 1.08000 * 119.99585 * 314.46523 * 15 14 12 17 17 C 1.39695 * 120.00221 * 134.46344 * 15 14 12 18 18 N 1.31019 * 120.00155 * 153.24101 * 17 15 14 19 19 Si 1.86800 * 119.99853 * 333.24576 * 17 15 14 20 20 H 1.48500 * 109.47391 * 95.47438 * 19 17 15 21 21 H 1.48508 * 109.46940 * 215.47395 * 19 17 15 22 22 H 1.48496 * 109.47357 * 335.47045 * 19 17 15 23 23 H 1.09001 * 109.47165 * 83.88342 * 1 2 3 24 24 H 1.09004 * 109.46898 * 203.87681 * 1 2 3 25 25 H 1.08991 * 109.47336 * 323.87796 * 1 2 3 26 26 H 1.09000 * 109.22732 * 311.04991 * 7 5 4 27 27 H 1.09004 * 109.22581 * 70.45402 * 7 5 4 28 28 H 1.08997 * 109.39355 * 49.45679 * 8 7 5 29 29 H 1.09005 * 109.38651 * 169.15785 * 8 7 5 30 30 H 1.09001 * 109.61356 * 303.27863 * 9 8 7 31 31 H 1.09006 * 109.57672 * 182.87633 * 9 8 7 32 32 H 1.09007 * 109.57779 * 296.68400 * 11 5 4 33 33 H 1.09006 * 109.57938 * 56.93431 * 11 5 4 34 34 H 1.08995 * 109.47514 * 89.99796 * 13 12 4 35 35 H 1.09007 * 109.47378 * 210.00260 * 13 12 4 36 36 H 1.09003 * 109.47453 * 330.00080 * 13 12 4 37 37 H 0.97005 * 120.00514 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2726 1.0546 0.0000 4 7 3.6121 0.6517 0.0006 5 6 4.7730 1.5452 0.0002 6 1 5.6869 0.9510 -0.0032 7 6 4.7355 2.4239 -1.2465 8 6 6.0532 3.1742 -1.4171 9 6 6.1816 4.2557 -0.3410 10 16 6.2320 3.4559 1.2903 11 6 4.7397 2.4191 1.2567 12 6 3.6567 -0.6926 -0.0045 13 6 4.8986 -1.5462 -0.0117 14 6 2.3406 -1.1482 0.0005 15 6 1.9156 -2.4989 0.0006 16 1 2.3757 -3.2097 -0.6697 17 6 0.9012 -2.9119 0.8678 18 7 0.1499 -3.9387 0.5552 19 14 0.6160 -2.0001 2.4730 20 1 -0.4563 -0.9901 2.2849 21 1 0.2076 -2.9656 3.5249 22 1 1.8699 -1.3199 2.8855 23 1 -0.3633 0.1095 -1.0218 24 1 -0.3633 -0.9398 0.4160 25 1 -0.3633 0.8300 0.6058 26 1 4.5630 1.7978 -2.1219 27 1 3.9221 3.1437 -1.1541 28 1 6.8830 2.4732 -1.3275 29 1 6.0795 3.6398 -2.4024 30 1 5.3242 4.9267 -0.3925 31 1 7.1001 4.8210 -0.4991 32 1 3.8540 3.0543 1.2364 33 1 4.7136 1.7845 2.1425 34 1 5.2014 -1.7557 1.0141 35 1 4.6923 -2.4836 -0.5284 36 1 5.7005 -1.0167 -0.5262 37 1 -0.5548 -4.2253 1.1571 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258234422.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:40 Heat of formation + Delta-G solvation = 40.687177 kcal Electronic energy + Delta-G solvation = -18618.252694 eV Core-core repulsion = 15907.951781 eV Total energy + Delta-G solvation = -2710.300913 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.76538 -38.13717 -35.32440 -34.22343 -32.89494 -31.55134 -29.39231 -28.47393 -27.86867 -25.80243 -23.64022 -22.07052 -20.97806 -19.74632 -18.88474 -17.92894 -16.86633 -16.50547 -16.26176 -15.80881 -15.44391 -14.93814 -14.64798 -14.53626 -14.26915 -14.15587 -14.10505 -13.87900 -13.56199 -13.38085 -12.94427 -12.75400 -12.66758 -12.53866 -12.36343 -12.05305 -12.02729 -11.86261 -11.80269 -11.02958 -10.85492 -10.73312 -9.67341 -8.94112 -8.75645 -8.52974 -6.08338 0.58604 1.06290 1.31346 1.34098 1.41724 1.47442 2.00849 2.05035 2.29512 3.15222 3.30319 3.58110 3.76076 3.88107 3.96468 4.09797 4.16487 4.28058 4.38145 4.46958 4.56086 4.63122 4.70900 4.72114 4.79663 4.84829 4.93409 4.97676 5.01331 5.13816 5.20718 5.34320 5.57925 5.63076 5.94268 6.46725 6.56455 6.98010 7.12447 7.29097 8.59855 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.031492 B = 0.005727 C = 0.005651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.890571 B = 4887.688093 C = 4953.976176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.013 3.987 3 N -0.325 5.325 4 N -0.367 5.367 5 C 0.169 3.831 6 H 0.117 0.883 7 C -0.129 4.129 8 C -0.109 4.109 9 C -0.077 4.077 10 S -0.263 6.263 11 C -0.082 4.082 12 C -0.025 4.025 13 C -0.058 4.058 14 C -0.077 4.077 15 C -0.479 4.479 16 H 0.045 0.955 17 C 0.067 3.933 18 N -0.884 5.884 19 Si 0.919 3.081 20 H -0.245 1.245 21 H -0.282 1.282 22 H -0.280 1.280 23 H 0.076 0.924 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.133 0.867 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.581 14.680 -1.488 18.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.151 4.151 3 N -0.149 5.149 4 N -0.153 5.153 5 C 0.066 3.934 6 H 0.135 0.865 7 C -0.167 4.167 8 C -0.148 4.148 9 C -0.225 4.225 10 S -0.036 6.036 11 C -0.231 4.231 12 C -0.150 4.150 13 C -0.116 4.116 14 C -0.088 4.088 15 C -0.514 4.514 16 H 0.063 0.937 17 C -0.141 4.141 18 N -0.517 5.517 19 Si 0.743 3.257 20 H -0.169 1.169 21 H -0.208 1.208 22 H -0.206 1.206 23 H 0.094 0.906 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.105 0.895 29 H 0.122 0.878 30 H 0.108 0.892 31 H 0.151 0.849 32 H 0.100 0.900 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.302 15.976 -0.612 20.173 hybrid contribution -1.506 -1.282 -0.134 1.982 sum 10.796 14.694 -0.746 18.249 Atomic orbital electron populations 1.20233 0.87527 1.02050 1.02630 1.22821 0.96862 0.91666 1.03798 1.76369 0.87569 1.23495 1.27456 1.48020 1.04081 1.03789 1.59423 1.21604 0.85721 0.90720 0.95388 0.86496 1.21818 0.99829 0.98836 0.96263 1.21710 0.96124 0.97103 0.99845 1.23654 1.07611 0.99852 0.91407 1.86899 1.34106 1.55726 1.26914 1.23638 0.98913 0.99876 1.00641 1.22058 0.97834 0.84232 1.10904 1.20081 0.91372 0.97813 1.02361 1.18003 0.89913 0.93674 1.07185 1.18090 1.19128 0.92898 1.21323 0.93706 1.25969 0.93065 0.94856 1.00230 1.69918 1.16760 1.28179 1.36835 0.86355 0.79512 0.79424 0.80378 1.16904 1.20776 1.20571 0.90568 0.91751 0.91137 0.91503 0.91757 0.89518 0.87799 0.89234 0.84899 0.89993 0.89065 0.91244 0.91367 0.90171 0.91200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.87 9.03 71.24 0.64 -2.23 16 2 C 0.01 0.64 6.25 43.69 0.27 0.92 16 3 N -0.32 -14.47 12.30 -46.35 -0.57 -15.04 16 4 N -0.37 -14.55 3.24 -311.95 -1.01 -15.56 16 5 C 0.17 4.89 2.74 44.88 0.12 5.02 16 6 H 0.12 3.04 6.54 -2.38 -0.02 3.03 16 7 C -0.13 -3.09 5.13 30.32 0.16 -2.94 16 8 C -0.11 -1.67 5.75 30.49 0.18 -1.49 16 9 C -0.08 -1.17 6.46 72.02 0.46 -0.70 16 10 S -0.26 -5.80 22.33 -56.49 -1.26 -7.06 16 11 C -0.08 -2.28 5.98 72.01 0.43 -1.85 16 12 C -0.03 -1.11 7.06 42.40 0.30 -0.81 16 13 C -0.06 -2.04 9.76 71.24 0.70 -1.35 16 14 C -0.08 -3.99 4.62 -21.30 -0.10 -4.08 16 15 C -0.48 -27.44 9.30 23.45 0.22 -27.22 16 16 H 0.04 2.78 8.06 -2.91 -0.02 2.75 16 17 C 0.07 3.72 4.45 85.17 0.38 4.10 16 18 N -0.88 -51.08 13.94 21.79 0.30 -50.78 16 19 Si 0.92 44.45 24.94 68.60 1.71 46.16 16 20 H -0.24 -10.97 5.99 99.48 0.60 -10.38 16 21 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 22 H -0.28 -14.26 7.11 99.48 0.71 -13.56 16 23 H 0.08 3.04 8.14 -2.39 -0.02 3.03 16 24 H 0.06 3.02 3.97 -2.38 -0.01 3.01 16 25 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 26 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.06 1.69 8.08 -2.38 -0.02 1.67 16 28 H 0.09 1.25 8.05 -2.39 -0.02 1.23 16 29 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.13 1.38 8.14 -2.38 -0.02 1.36 16 32 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 33 H 0.09 2.82 8.14 -2.38 -0.02 2.80 16 34 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.07 2.56 7.98 -2.38 -0.02 2.54 16 36 H 0.08 2.21 7.08 -2.39 -0.02 2.19 16 37 H 0.28 14.77 8.30 -92.70 -0.77 14.00 16 Total: -1.00 -65.79 304.81 3.87 -61.91 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 0.94 Total: 12.99 kcal Atomic # 6 Polarization: -36.40 SS G_CDS: 3.76 Total: -32.64 kcal Atomic # 7 Polarization: -80.10 SS G_CDS: -1.28 Total: -81.37 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.71 Total: 46.16 kcal Atomic # 16 Polarization: -5.80 SS G_CDS: -1.26 Total: -7.06 kcal Total: -65.79 3.87 -61.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258234422.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.602 kcal (2) G-P(sol) polarization free energy of solvation -65.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds