Wall clock time and date at job start Mon Mar 30 2020 06:24:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50705 * 1
3 3 N 1.30317 * 125.97554 * 2 1
4 4 N 1.39878 * 109.23381 * 179.97438 * 3 2 1
5 5 C 1.46498 * 125.67515 * 179.97438 * 4 3 2
6 6 H 1.09005 * 109.38203 * 180.22542 * 5 4 3
7 7 C 1.52581 * 109.38862 * 300.02190 * 5 4 3
8 8 C 1.52582 * 110.68915 * 190.74824 * 7 5 4
9 9 C 1.53107 * 109.94792 * 289.26337 * 8 7 5
10 10 S 1.81749 * 108.80697 * 63.08824 * 9 8 7
11 11 C 1.53087 * 109.31345 * 60.47128 * 5 4 3
12 12 C 1.34501 * 108.64122 * 0.24505 * 4 3 2
13 13 C 1.50700 * 126.40189 * 179.72066 * 12 4 3
14 14 C 1.39275 * 107.19472 * 359.62082 * 12 4 3
15 15 C 1.41596 * 126.56174 * 180.14514 * 14 12 4
16 16 H 1.08000 * 119.99585 * 314.46523 * 15 14 12
17 17 C 1.39695 * 120.00221 * 134.46344 * 15 14 12
18 18 N 1.31019 * 120.00155 * 153.24101 * 17 15 14
19 19 Si 1.86800 * 119.99853 * 333.24576 * 17 15 14
20 20 H 1.48500 * 109.47391 * 95.47438 * 19 17 15
21 21 H 1.48508 * 109.46940 * 215.47395 * 19 17 15
22 22 H 1.48496 * 109.47357 * 335.47045 * 19 17 15
23 23 H 1.09001 * 109.47165 * 83.88342 * 1 2 3
24 24 H 1.09004 * 109.46898 * 203.87681 * 1 2 3
25 25 H 1.08991 * 109.47336 * 323.87796 * 1 2 3
26 26 H 1.09000 * 109.22732 * 311.04991 * 7 5 4
27 27 H 1.09004 * 109.22581 * 70.45402 * 7 5 4
28 28 H 1.08997 * 109.39355 * 49.45679 * 8 7 5
29 29 H 1.09005 * 109.38651 * 169.15785 * 8 7 5
30 30 H 1.09001 * 109.61356 * 303.27863 * 9 8 7
31 31 H 1.09006 * 109.57672 * 182.87633 * 9 8 7
32 32 H 1.09007 * 109.57779 * 296.68400 * 11 5 4
33 33 H 1.09006 * 109.57938 * 56.93431 * 11 5 4
34 34 H 1.08995 * 109.47514 * 89.99796 * 13 12 4
35 35 H 1.09007 * 109.47378 * 210.00260 * 13 12 4
36 36 H 1.09003 * 109.47453 * 330.00080 * 13 12 4
37 37 H 0.97005 * 120.00514 * 180.02562 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 7 2.2726 1.0546 0.0000
4 7 3.6121 0.6517 0.0006
5 6 4.7730 1.5452 0.0002
6 1 5.6869 0.9510 -0.0032
7 6 4.7355 2.4239 -1.2465
8 6 6.0532 3.1742 -1.4171
9 6 6.1816 4.2557 -0.3410
10 16 6.2320 3.4559 1.2903
11 6 4.7397 2.4191 1.2567
12 6 3.6567 -0.6926 -0.0045
13 6 4.8986 -1.5462 -0.0117
14 6 2.3406 -1.1482 0.0005
15 6 1.9156 -2.4989 0.0006
16 1 2.3757 -3.2097 -0.6697
17 6 0.9012 -2.9119 0.8678
18 7 0.1499 -3.9387 0.5552
19 14 0.6160 -2.0001 2.4730
20 1 -0.4563 -0.9901 2.2849
21 1 0.2076 -2.9656 3.5249
22 1 1.8699 -1.3199 2.8855
23 1 -0.3633 0.1095 -1.0218
24 1 -0.3633 -0.9398 0.4160
25 1 -0.3633 0.8300 0.6058
26 1 4.5630 1.7978 -2.1219
27 1 3.9221 3.1437 -1.1541
28 1 6.8830 2.4732 -1.3275
29 1 6.0795 3.6398 -2.4024
30 1 5.3242 4.9267 -0.3925
31 1 7.1001 4.8210 -0.4991
32 1 3.8540 3.0543 1.2364
33 1 4.7136 1.7845 2.1425
34 1 5.2014 -1.7557 1.0141
35 1 4.6923 -2.4836 -0.5284
36 1 5.7005 -1.0167 -0.5262
37 1 -0.5548 -4.2253 1.1571
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000258234422.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:24:40
Heat of formation + Delta-G solvation = 40.687177 kcal
Electronic energy + Delta-G solvation = -18618.252694 eV
Core-core repulsion = 15907.951781 eV
Total energy + Delta-G solvation = -2710.300913 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 266.115 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-41.76538 -38.13717 -35.32440 -34.22343 -32.89494 -31.55134 -29.39231 -28.47393
-27.86867 -25.80243 -23.64022 -22.07052 -20.97806 -19.74632 -18.88474 -17.92894
-16.86633 -16.50547 -16.26176 -15.80881 -15.44391 -14.93814 -14.64798 -14.53626
-14.26915 -14.15587 -14.10505 -13.87900 -13.56199 -13.38085 -12.94427 -12.75400
-12.66758 -12.53866 -12.36343 -12.05305 -12.02729 -11.86261 -11.80269 -11.02958
-10.85492 -10.73312 -9.67341 -8.94112 -8.75645 -8.52974 -6.08338 0.58604
1.06290 1.31346 1.34098 1.41724 1.47442 2.00849 2.05035 2.29512
3.15222 3.30319 3.58110 3.76076 3.88107 3.96468 4.09797 4.16487
4.28058 4.38145 4.46958 4.56086 4.63122 4.70900 4.72114 4.79663
4.84829 4.93409 4.97676 5.01331 5.13816 5.20718 5.34320 5.57925
5.63076 5.94268 6.46725 6.56455 6.98010 7.12447 7.29097 8.59855
Molecular weight = 266.11amu
Principal moments of inertia in cm(-1)
A = 0.031492 B = 0.005727 C = 0.005651
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 888.890571 B = 4887.688093 C = 4953.976176
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 C 0.013 3.987
3 N -0.325 5.325
4 N -0.367 5.367
5 C 0.169 3.831
6 H 0.117 0.883
7 C -0.129 4.129
8 C -0.109 4.109
9 C -0.077 4.077
10 S -0.263 6.263
11 C -0.082 4.082
12 C -0.025 4.025
13 C -0.058 4.058
14 C -0.077 4.077
15 C -0.479 4.479
16 H 0.045 0.955
17 C 0.067 3.933
18 N -0.884 5.884
19 Si 0.919 3.081
20 H -0.245 1.245
21 H -0.282 1.282
22 H -0.280 1.280
23 H 0.076 0.924
24 H 0.064 0.936
25 H 0.070 0.930
26 H 0.066 0.934
27 H 0.064 0.936
28 H 0.086 0.914
29 H 0.104 0.896
30 H 0.089 0.911
31 H 0.133 0.867
32 H 0.081 0.919
33 H 0.091 0.909
34 H 0.069 0.931
35 H 0.067 0.933
36 H 0.080 0.920
37 H 0.278 0.722
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.581 14.680 -1.488 18.757
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 C -0.151 4.151
3 N -0.149 5.149
4 N -0.153 5.153
5 C 0.066 3.934
6 H 0.135 0.865
7 C -0.167 4.167
8 C -0.148 4.148
9 C -0.225 4.225
10 S -0.036 6.036
11 C -0.231 4.231
12 C -0.150 4.150
13 C -0.116 4.116
14 C -0.088 4.088
15 C -0.514 4.514
16 H 0.063 0.937
17 C -0.141 4.141
18 N -0.517 5.517
19 Si 0.743 3.257
20 H -0.169 1.169
21 H -0.208 1.208
22 H -0.206 1.206
23 H 0.094 0.906
24 H 0.082 0.918
25 H 0.089 0.911
26 H 0.085 0.915
27 H 0.082 0.918
28 H 0.105 0.895
29 H 0.122 0.878
30 H 0.108 0.892
31 H 0.151 0.849
32 H 0.100 0.900
33 H 0.109 0.891
34 H 0.088 0.912
35 H 0.086 0.914
36 H 0.098 0.902
37 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges 12.302 15.976 -0.612 20.173
hybrid contribution -1.506 -1.282 -0.134 1.982
sum 10.796 14.694 -0.746 18.249
Atomic orbital electron populations
1.20233 0.87527 1.02050 1.02630 1.22821 0.96862 0.91666 1.03798
1.76369 0.87569 1.23495 1.27456 1.48020 1.04081 1.03789 1.59423
1.21604 0.85721 0.90720 0.95388 0.86496 1.21818 0.99829 0.98836
0.96263 1.21710 0.96124 0.97103 0.99845 1.23654 1.07611 0.99852
0.91407 1.86899 1.34106 1.55726 1.26914 1.23638 0.98913 0.99876
1.00641 1.22058 0.97834 0.84232 1.10904 1.20081 0.91372 0.97813
1.02361 1.18003 0.89913 0.93674 1.07185 1.18090 1.19128 0.92898
1.21323 0.93706 1.25969 0.93065 0.94856 1.00230 1.69918 1.16760
1.28179 1.36835 0.86355 0.79512 0.79424 0.80378 1.16904 1.20776
1.20571 0.90568 0.91751 0.91137 0.91503 0.91757 0.89518 0.87799
0.89234 0.84899 0.89993 0.89065 0.91244 0.91367 0.90171 0.91200
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -2.87 9.03 71.24 0.64 -2.23 16
2 C 0.01 0.64 6.25 43.69 0.27 0.92 16
3 N -0.32 -14.47 12.30 -46.35 -0.57 -15.04 16
4 N -0.37 -14.55 3.24 -311.95 -1.01 -15.56 16
5 C 0.17 4.89 2.74 44.88 0.12 5.02 16
6 H 0.12 3.04 6.54 -2.38 -0.02 3.03 16
7 C -0.13 -3.09 5.13 30.32 0.16 -2.94 16
8 C -0.11 -1.67 5.75 30.49 0.18 -1.49 16
9 C -0.08 -1.17 6.46 72.02 0.46 -0.70 16
10 S -0.26 -5.80 22.33 -56.49 -1.26 -7.06 16
11 C -0.08 -2.28 5.98 72.01 0.43 -1.85 16
12 C -0.03 -1.11 7.06 42.40 0.30 -0.81 16
13 C -0.06 -2.04 9.76 71.24 0.70 -1.35 16
14 C -0.08 -3.99 4.62 -21.30 -0.10 -4.08 16
15 C -0.48 -27.44 9.30 23.45 0.22 -27.22 16
16 H 0.04 2.78 8.06 -2.91 -0.02 2.75 16
17 C 0.07 3.72 4.45 85.17 0.38 4.10 16
18 N -0.88 -51.08 13.94 21.79 0.30 -50.78 16
19 Si 0.92 44.45 24.94 68.60 1.71 46.16 16
20 H -0.24 -10.97 5.99 99.48 0.60 -10.38 16
21 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16
22 H -0.28 -14.26 7.11 99.48 0.71 -13.56 16
23 H 0.08 3.04 8.14 -2.39 -0.02 3.03 16
24 H 0.06 3.02 3.97 -2.38 -0.01 3.01 16
25 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16
26 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16
27 H 0.06 1.69 8.08 -2.38 -0.02 1.67 16
28 H 0.09 1.25 8.05 -2.39 -0.02 1.23 16
29 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16
30 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16
31 H 0.13 1.38 8.14 -2.38 -0.02 1.36 16
32 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16
33 H 0.09 2.82 8.14 -2.38 -0.02 2.80 16
34 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16
35 H 0.07 2.56 7.98 -2.38 -0.02 2.54 16
36 H 0.08 2.21 7.08 -2.39 -0.02 2.19 16
37 H 0.28 14.77 8.30 -92.70 -0.77 14.00 16
Total: -1.00 -65.79 304.81 3.87 -61.91
By element:
Atomic # 1 Polarization: 12.05 SS G_CDS: 0.94 Total: 12.99 kcal
Atomic # 6 Polarization: -36.40 SS G_CDS: 3.76 Total: -32.64 kcal
Atomic # 7 Polarization: -80.10 SS G_CDS: -1.28 Total: -81.37 kcal
Atomic # 14 Polarization: 44.45 SS G_CDS: 1.71 Total: 46.16 kcal
Atomic # 16 Polarization: -5.80 SS G_CDS: -1.26 Total: -7.06 kcal
Total: -65.79 3.87 -61.91 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000258234422.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 102.602 kcal
(2) G-P(sol) polarization free energy of solvation -65.789 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.813 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.874 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.915 kcal
(6) G-S(sol) free energy of system = (1) + (5) 40.687 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds