Wall clock time and date at job start Mon Mar 30 2020 07:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46910 * 1 3 3 C 1.46842 * 110.99703 * 2 1 4 4 C 1.53039 * 109.52266 * 174.16402 * 3 2 1 5 5 C 1.53123 * 109.31189 * 59.15550 * 4 3 2 6 6 C 1.50697 * 109.52399 * 182.46470 * 5 4 3 7 7 C 1.33632 * 122.75234 * 84.73077 * 6 5 4 8 8 S 1.76198 * 107.92885 * 179.97438 * 7 6 5 9 9 C 1.70981 * 90.28012 * 0.27243 * 8 7 6 10 10 C 1.50701 * 124.91783 * 179.83472 * 9 8 7 11 11 C 1.50698 * 109.47380 * 270.00548 * 10 9 8 12 12 H 1.07997 * 119.99955 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99554 * 179.97438 * 11 10 9 14 14 N 1.31508 * 120.00507 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99651 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47295 * 90.00445 * 15 13 11 17 17 H 1.48506 * 109.47079 * 210.00341 * 15 13 11 18 18 H 1.48498 * 109.47079 * 330.00029 * 15 13 11 19 19 N 1.29030 * 110.16645 * 359.84269 * 9 8 7 20 20 C 1.53129 * 109.15931 * 302.40768 * 5 4 3 21 21 C 1.46849 * 110.99768 * 235.79080 * 2 1 3 22 22 H 1.08993 * 109.46992 * 60.00241 * 1 2 3 23 23 H 1.08996 * 109.47228 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46908 * 299.99999 * 1 2 3 25 25 H 1.08995 * 109.46659 * 54.14295 * 3 2 1 26 26 H 1.09009 * 109.46400 * 294.17124 * 3 2 1 27 27 H 1.09002 * 109.50563 * 179.11883 * 4 3 2 28 28 H 1.09003 * 109.50107 * 299.19864 * 4 3 2 29 29 H 1.09000 * 109.52057 * 62.27355 * 5 4 3 30 30 H 1.08003 * 126.03784 * 0.03737 * 7 6 5 31 31 H 1.09002 * 109.46781 * 30.01115 * 10 9 8 32 32 H 1.08999 * 109.46955 * 149.99980 * 10 9 8 33 33 H 0.97000 * 120.00701 * 179.97438 * 14 13 11 34 34 H 1.09000 * 109.46579 * 297.65836 * 20 5 4 35 35 H 1.08997 * 109.53656 * 177.57437 * 20 5 4 36 36 H 1.09001 * 109.46071 * 305.85100 * 21 2 1 37 37 H 1.08995 * 109.46417 * 65.82041 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3342 0.1467 5 6 4.1196 0.5367 -1.0139 6 6 5.6139 0.4461 -0.8417 7 6 6.1993 -0.4883 -0.0866 8 16 7.9412 -0.2339 -0.1623 9 6 7.7087 1.1086 -1.1953 10 6 8.8136 1.9618 -1.7630 11 6 9.1020 3.1024 -0.8213 12 1 8.5415 3.1996 0.0967 13 6 10.0820 4.0213 -1.1313 14 7 10.7649 3.9027 -2.2490 15 14 10.4400 5.4348 0.0363 16 1 11.4834 5.0215 1.0088 17 1 10.9216 6.6068 -0.7382 18 1 9.1995 5.7999 0.7664 19 7 6.4502 1.2856 -1.4183 20 6 3.5182 -0.8715 -1.0209 21 6 1.9953 -0.7708 -1.1338 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.5634 1.9257 0.8329 26 1 1.7325 1.8608 -0.9377 27 1 3.9099 2.3513 0.1309 28 1 3.7814 0.8574 1.0909 29 1 3.8901 1.0349 -1.9558 30 1 5.6941 -1.2633 0.4707 31 1 9.7120 1.3572 -1.8874 32 1 8.5059 2.3583 -2.7306 33 1 11.4542 4.5493 -2.4673 34 1 3.7814 -1.3836 -0.0953 35 1 3.9098 -1.4309 -1.8704 36 1 1.5635 -1.7716 -1.1242 37 1 1.7325 -0.2709 -2.0660 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259260982.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:27 Heat of formation + Delta-G solvation = 28.603712 kcal Electronic energy + Delta-G solvation = -17707.014846 eV Core-core repulsion = 14996.189955 eV Total energy + Delta-G solvation = -2710.824891 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.84852 -38.31541 -34.28841 -33.11925 -30.95420 -30.47474 -27.95982 -26.65710 -24.59652 -23.26389 -23.13037 -21.28171 -19.76603 -18.53864 -17.13331 -16.44358 -15.95881 -15.21763 -14.88228 -14.68829 -14.50637 -14.05443 -13.66962 -13.26103 -13.05798 -12.56001 -12.49875 -12.45275 -12.05239 -11.73425 -11.37193 -11.34796 -11.18713 -10.85148 -10.71563 -10.53213 -10.41630 -10.37089 -10.02929 -9.57497 -8.78198 -8.64732 -8.49362 -8.48163 -7.94250 -6.12680 -4.17064 1.49688 2.14366 2.54907 3.28382 3.34217 3.38572 3.52830 3.78749 4.38919 4.55559 4.75807 4.84188 5.07804 5.13534 5.23802 5.26318 5.33769 5.40215 5.46566 5.56049 5.63950 5.66361 5.72074 5.76746 5.95570 5.97530 6.09797 6.20108 6.28919 6.50963 6.86209 6.91095 6.93597 7.30142 7.39928 7.81302 8.13121 8.61227 8.84583 9.46651 10.97541 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.028026 B = 0.004384 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.841349 B = 6385.923507 C = 6948.519231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.545 5.545 3 C 0.057 3.943 4 C -0.105 4.105 5 C -0.011 4.011 6 C 0.082 3.918 7 C -0.294 4.294 8 S 0.075 5.925 9 C 0.127 3.873 10 C 0.084 3.916 11 C -0.512 4.512 12 H 0.059 0.941 13 C 0.062 3.938 14 N -0.891 5.891 15 Si 0.901 3.099 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.273 1.273 19 N -0.495 5.495 20 C -0.108 4.108 21 C 0.057 3.943 22 H 0.023 0.977 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.034 0.966 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.164 0.836 31 H 0.043 0.957 32 H 0.053 0.947 33 H 0.265 0.735 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.084 -9.469 3.628 19.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.269 5.269 3 C -0.071 4.071 4 C -0.144 4.144 5 C -0.032 4.032 6 C -0.051 4.051 7 C -0.433 4.433 8 S 0.331 5.669 9 C -0.151 4.151 10 C 0.044 3.956 11 C -0.552 4.552 12 H 0.077 0.923 13 C -0.140 4.140 14 N -0.530 5.530 15 Si 0.728 3.272 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.197 1.197 19 N -0.209 5.209 20 C -0.146 4.146 21 C -0.071 4.071 22 H 0.042 0.958 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.053 0.947 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.181 0.819 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -15.043 -9.691 4.041 18.345 hybrid contribution -0.919 1.235 -0.206 1.554 sum -15.962 -8.456 3.835 18.466 Atomic orbital electron populations 1.22343 0.87535 1.01874 1.00567 1.61948 1.07312 1.14169 1.43509 1.22117 0.95690 0.88708 1.00538 1.21607 0.93315 1.00888 0.98555 1.19668 0.87591 0.96306 0.99642 1.20081 0.96395 0.92395 0.96255 1.26460 0.96305 1.08671 1.11852 1.83904 1.05407 1.29460 1.48106 1.28168 0.95574 0.95698 0.95641 1.18149 0.87705 0.92446 0.97335 1.20898 1.19265 1.09363 1.05686 0.92311 1.24956 0.95636 0.97918 0.95482 1.69936 1.23176 1.36625 1.23240 0.86446 0.78671 0.81471 0.80624 1.20421 1.20987 1.19732 1.66222 1.01583 1.27031 1.26047 1.21668 0.93661 0.96443 1.02817 1.22101 0.95593 0.98033 0.91385 0.95798 0.91506 0.91429 0.90661 0.94735 0.90834 0.90971 0.90058 0.81855 0.93911 0.92864 0.92567 0.90753 0.91202 0.90723 0.94816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.59 60.07 0.58 0.79 16 2 N -0.54 -5.84 4.91 -242.96 -1.19 -7.03 16 3 C 0.06 0.65 5.46 -3.84 -0.02 0.62 16 4 C -0.11 -1.42 5.36 -26.65 -0.14 -1.56 16 5 C -0.01 -0.15 2.67 -91.64 -0.24 -0.40 16 6 C 0.08 1.48 5.73 -84.23 -0.48 0.99 16 7 C -0.29 -4.92 10.36 29.12 0.30 -4.61 16 8 S 0.07 1.41 23.18 -107.50 -2.49 -1.08 16 9 C 0.13 2.89 6.58 -13.45 -0.09 2.81 16 10 C 0.08 2.18 5.56 -29.04 -0.16 2.02 16 11 C -0.51 -14.35 9.09 -34.44 -0.31 -14.66 16 12 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 13 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 14 N -0.89 -25.86 13.29 55.43 0.74 -25.13 16 15 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 19 N -0.50 -10.93 10.53 -8.06 -0.08 -11.02 16 20 C -0.11 -1.27 4.94 -26.65 -0.13 -1.40 16 21 C 0.06 0.59 5.47 -3.83 -0.02 0.56 16 22 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 23 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 26 H 0.03 0.39 8.14 -51.92 -0.42 -0.03 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.16 2.25 6.93 -52.48 -0.36 1.89 16 31 H 0.04 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.05 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 34 H 0.07 0.87 6.82 -51.93 -0.35 0.52 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 37 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 314.55 15.07 4.74 4.74 Total: -1.00 -29.64 314.55 -9.89 -39.53 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: -5.75 Total: -3.24 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -0.83 Total: -13.19 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: -0.54 Total: -43.18 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -2.49 Total: -1.08 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.64 -9.89 -39.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259260982.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.136 kcal (2) G-P(sol) polarization free energy of solvation -29.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds