Wall clock time and date at job start Mon Mar 30 2020 07:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46910 * 1 3 3 C 1.46842 * 110.99703 * 2 1 4 4 C 1.53039 * 109.52266 * 174.16402 * 3 2 1 5 5 C 1.53123 * 109.31189 * 59.15550 * 4 3 2 6 6 C 1.50697 * 109.52399 * 182.46470 * 5 4 3 7 7 C 1.33632 * 122.75234 * 84.73077 * 6 5 4 8 8 S 1.76198 * 107.92885 * 179.97438 * 7 6 5 9 9 C 1.70981 * 90.28012 * 0.27243 * 8 7 6 10 10 C 1.50701 * 124.91783 * 179.83472 * 9 8 7 11 11 C 1.50698 * 109.47380 * 270.00548 * 10 9 8 12 12 H 1.07997 * 119.99955 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99554 * 179.97438 * 11 10 9 14 14 N 1.31508 * 120.00507 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99651 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47295 * 90.00445 * 15 13 11 17 17 H 1.48506 * 109.47079 * 210.00341 * 15 13 11 18 18 H 1.48498 * 109.47079 * 330.00029 * 15 13 11 19 19 N 1.29030 * 110.16645 * 359.84269 * 9 8 7 20 20 C 1.53129 * 109.15931 * 302.40768 * 5 4 3 21 21 C 1.46849 * 110.99768 * 235.79080 * 2 1 3 22 22 H 1.08993 * 109.46992 * 60.00241 * 1 2 3 23 23 H 1.08996 * 109.47228 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46908 * 299.99999 * 1 2 3 25 25 H 1.08995 * 109.46659 * 54.14295 * 3 2 1 26 26 H 1.09009 * 109.46400 * 294.17124 * 3 2 1 27 27 H 1.09002 * 109.50563 * 179.11883 * 4 3 2 28 28 H 1.09003 * 109.50107 * 299.19864 * 4 3 2 29 29 H 1.09000 * 109.52057 * 62.27355 * 5 4 3 30 30 H 1.08003 * 126.03784 * 0.03737 * 7 6 5 31 31 H 1.09002 * 109.46781 * 30.01115 * 10 9 8 32 32 H 1.08999 * 109.46955 * 149.99980 * 10 9 8 33 33 H 0.97000 * 120.00701 * 179.97438 * 14 13 11 34 34 H 1.09000 * 109.46579 * 297.65836 * 20 5 4 35 35 H 1.08997 * 109.53656 * 177.57437 * 20 5 4 36 36 H 1.09001 * 109.46071 * 305.85100 * 21 2 1 37 37 H 1.08995 * 109.46417 * 65.82041 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3342 0.1467 5 6 4.1196 0.5367 -1.0139 6 6 5.6139 0.4461 -0.8417 7 6 6.1993 -0.4883 -0.0866 8 16 7.9412 -0.2339 -0.1623 9 6 7.7087 1.1086 -1.1953 10 6 8.8136 1.9618 -1.7630 11 6 9.1020 3.1024 -0.8213 12 1 8.5415 3.1996 0.0967 13 6 10.0820 4.0213 -1.1313 14 7 10.7649 3.9027 -2.2490 15 14 10.4400 5.4348 0.0363 16 1 11.4834 5.0215 1.0088 17 1 10.9216 6.6068 -0.7382 18 1 9.1995 5.7999 0.7664 19 7 6.4502 1.2856 -1.4183 20 6 3.5182 -0.8715 -1.0209 21 6 1.9953 -0.7708 -1.1338 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.5634 1.9257 0.8329 26 1 1.7325 1.8608 -0.9377 27 1 3.9099 2.3513 0.1309 28 1 3.7814 0.8574 1.0909 29 1 3.8901 1.0349 -1.9558 30 1 5.6941 -1.2633 0.4707 31 1 9.7120 1.3572 -1.8874 32 1 8.5059 2.3583 -2.7306 33 1 11.4542 4.5493 -2.4673 34 1 3.7814 -1.3836 -0.0953 35 1 3.9098 -1.4309 -1.8704 36 1 1.5635 -1.7716 -1.1242 37 1 1.7325 -0.2709 -2.0660 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259260982.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:26 Heat of formation + Delta-G solvation = 9.938177 kcal Electronic energy + Delta-G solvation = -17707.824244 eV Core-core repulsion = 14996.189955 eV Total energy + Delta-G solvation = -2711.634289 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.16548 -39.44714 -35.79849 -34.79307 -32.21889 -31.84538 -29.55887 -27.69209 -26.36006 -24.56618 -24.06172 -22.68980 -20.97856 -19.90829 -18.73081 -18.51400 -16.97316 -16.62034 -16.05156 -15.96385 -15.58554 -15.39375 -15.04051 -14.56059 -14.45556 -14.17430 -13.76219 -13.37520 -13.34209 -13.26330 -12.79543 -12.60976 -12.59883 -12.43234 -12.14213 -12.04874 -11.72427 -11.63069 -11.46121 -11.38984 -10.67319 -10.37719 -10.21122 -9.47986 -9.28425 -8.26570 -6.40129 -0.06285 0.60774 1.00018 1.39431 1.40857 1.52135 1.97200 2.39071 3.00112 3.05320 3.25202 3.79361 3.91688 4.03399 4.20571 4.31431 4.37962 4.48651 4.49704 4.57485 4.62909 4.66425 4.77947 4.80443 4.89566 5.01735 5.05766 5.08991 5.13084 5.21620 5.23620 5.41572 5.45657 5.63262 6.01219 6.10615 6.15435 6.66761 7.05015 7.28125 8.83673 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.028026 B = 0.004384 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.841349 B = 6385.923507 C = 6948.519231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.553 5.553 3 C 0.063 3.937 4 C -0.101 4.101 5 C -0.008 4.008 6 C 0.061 3.939 7 C -0.267 4.267 8 S 0.117 5.883 9 C 0.077 3.923 10 C 0.095 3.905 11 C -0.531 4.531 12 H 0.051 0.949 13 C 0.013 3.987 14 N -0.924 5.924 15 Si 0.969 3.031 16 H -0.265 1.265 17 H -0.277 1.277 18 H -0.271 1.271 19 N -0.517 5.517 20 C -0.100 4.100 21 C 0.059 3.941 22 H 0.025 0.975 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.087 0.913 26 H 0.031 0.969 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.204 0.796 31 H 0.029 0.971 32 H 0.019 0.981 33 H 0.269 0.731 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.748 -10.651 5.418 21.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.278 5.278 3 C -0.065 4.065 4 C -0.139 4.139 5 C -0.029 4.029 6 C -0.071 4.071 7 C -0.406 4.406 8 S 0.373 5.627 9 C -0.201 4.201 10 C 0.054 3.946 11 C -0.570 4.570 12 H 0.069 0.931 13 C -0.187 4.187 14 N -0.563 5.563 15 Si 0.792 3.208 16 H -0.191 1.191 17 H -0.202 1.202 18 H -0.195 1.195 19 N -0.233 5.233 20 C -0.139 4.139 21 C -0.069 4.069 22 H 0.044 0.956 23 H 0.099 0.901 24 H 0.093 0.907 25 H 0.105 0.895 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.221 0.779 31 H 0.047 0.953 32 H 0.037 0.963 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.114 0.886 37 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -16.716 -10.880 5.826 20.779 hybrid contribution -0.465 1.512 -0.757 1.754 sum -17.182 -9.369 5.069 20.216 Atomic orbital electron populations 1.22408 0.85942 1.02953 1.01020 1.61964 1.08774 1.13416 1.43634 1.22027 0.93969 0.89608 1.00884 1.21536 0.94990 0.99358 0.98020 1.19757 0.85484 0.98421 0.99279 1.20572 0.97650 0.92255 0.96600 1.26941 0.95122 1.08270 1.10224 1.83603 1.06813 1.26490 1.45842 1.27507 0.95258 0.98333 0.98955 1.17736 0.88504 0.92523 0.95788 1.21147 1.19519 1.10525 1.05839 0.93051 1.25850 0.95241 1.00493 0.97104 1.70044 1.23668 1.37731 1.24840 0.85396 0.78659 0.78121 0.78596 1.19052 1.20169 1.19541 1.66173 1.01937 1.28482 1.26668 1.21633 0.94678 0.94242 1.03312 1.22112 0.94462 0.99115 0.91219 0.95622 0.90139 0.90717 0.89495 0.95091 0.93069 0.90954 0.91603 0.77935 0.95254 0.96321 0.92166 0.90002 0.90867 0.88621 0.95095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.59 127.69 1.22 1.56 16 2 N -0.55 -10.31 4.91 -922.58 -4.53 -14.84 16 3 C 0.06 1.31 5.46 86.33 0.47 1.79 16 4 C -0.10 -2.62 5.36 30.65 0.16 -2.46 16 5 C -0.01 -0.22 2.67 -11.46 -0.03 -0.25 16 6 C 0.06 2.16 5.73 41.52 0.24 2.40 16 7 C -0.27 -8.31 10.36 66.77 0.69 -7.61 16 8 S 0.12 4.29 23.18 -56.49 -1.31 2.98 16 9 C 0.08 3.59 6.58 88.52 0.58 4.17 16 10 C 0.09 5.19 5.56 29.10 0.16 5.35 16 11 C -0.53 -30.73 9.09 25.60 0.23 -30.50 16 12 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 13 C 0.01 0.71 5.46 84.66 0.46 1.18 16 14 N -0.92 -54.99 13.29 21.45 0.28 -54.71 16 15 Si 0.97 44.30 29.54 68.60 2.03 46.33 16 16 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 17 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 18 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 19 N -0.52 -23.41 10.53 -179.40 -1.89 -25.30 16 20 C -0.10 -2.10 4.94 30.65 0.15 -1.95 16 21 C 0.06 1.04 5.47 86.32 0.47 1.51 16 22 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 23 H 0.08 0.90 8.09 -2.39 -0.02 0.89 16 24 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.09 1.60 8.12 -2.39 -0.02 1.58 16 26 H 0.03 0.67 8.14 -2.38 -0.02 0.65 16 27 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.20 4.66 6.93 -2.91 -0.02 4.64 16 31 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 34 H 0.08 1.60 6.82 -2.39 -0.02 1.58 16 35 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.10 1.34 8.09 -2.39 -0.02 1.32 16 37 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -65.50 314.55 0.44 -65.06 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: 1.04 Total: 5.28 kcal Atomic # 6 Polarization: -29.63 SS G_CDS: 4.82 Total: -24.81 kcal Atomic # 7 Polarization: -88.71 SS G_CDS: -6.14 Total: -94.84 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: 4.29 SS G_CDS: -1.31 Total: 2.98 kcal Total: -65.50 0.44 -65.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259260982.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.995 kcal (2) G-P(sol) polarization free energy of solvation -65.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds