Wall clock time and date at job start Mon Mar 30 2020 06:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 S 1.76201 * 126.03894 * 2 1 4 4 C 1.70980 * 90.28233 * 180.16985 * 3 2 1 5 5 C 1.50696 * 124.91351 * 179.83940 * 4 3 2 6 6 C 1.50700 * 109.47099 * 269.99429 * 5 4 3 7 7 H 1.08001 * 120.00019 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99897 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00123 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99908 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47048 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47274 * 119.99987 * 10 8 6 13 13 H 1.48503 * 109.46908 * 239.99886 * 10 8 6 14 14 N 1.29028 * 110.16623 * 359.83491 * 4 3 2 15 15 C 1.31785 * 117.12813 * 0.02562 * 14 4 3 16 16 C 1.50695 * 122.75111 * 179.97438 * 15 14 4 17 17 H 1.09002 * 110.64491 * 180.72272 * 16 15 14 18 18 C 1.54595 * 110.72434 * 57.57107 * 16 15 14 19 19 C 1.53993 * 105.14156 * 219.50415 * 18 16 15 20 20 N 1.47908 * 107.05700 * 358.77979 * 19 18 16 21 21 C 1.46898 * 110.99980 * 145.84080 * 20 19 18 22 22 C 1.48534 * 105.81788 * 25.32512 * 20 19 18 23 23 H 1.08997 * 109.47699 * 270.12478 * 1 2 3 24 24 H 1.08999 * 109.46954 * 30.12630 * 1 2 3 25 25 H 1.09002 * 109.47311 * 150.12110 * 1 2 3 26 26 H 1.09001 * 109.47707 * 30.00287 * 5 4 3 27 27 H 1.09004 * 109.47310 * 150.00066 * 5 4 3 28 28 H 0.97005 * 119.99885 * 179.97438 * 9 8 6 29 29 H 1.08997 * 110.30815 * 338.42445 * 18 16 15 30 30 H 1.09002 * 110.30868 * 100.49297 * 18 16 15 31 31 H 1.09000 * 109.91656 * 118.12702 * 19 18 16 32 32 H 1.08993 * 109.92023 * 239.42133 * 19 18 16 33 33 H 1.08999 * 109.47214 * 59.87355 * 21 20 19 34 34 H 1.09004 * 109.46687 * 179.86980 * 21 20 19 35 35 H 1.08993 * 109.47205 * 299.87247 * 21 20 19 36 36 H 1.09000 * 110.66603 * 202.35749 * 22 20 19 37 37 H 1.09003 * 110.66913 * 79.23401 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5436 1.4248 0.0000 4 6 3.9311 0.4257 -0.0051 5 6 5.3531 0.9245 -0.0111 6 6 5.8214 1.0899 -1.4339 7 1 5.1558 0.8575 -2.2520 8 6 7.0997 1.5379 -1.6912 9 7 7.9105 1.8205 -0.6950 10 14 7.6800 1.7436 -3.4548 11 1 6.5862 1.3612 -4.3836 12 1 8.0569 3.1606 -3.6899 13 1 8.8584 0.8719 -3.6930 14 7 3.5844 -0.8171 -0.0029 15 6 2.2931 -1.0807 0.0020 16 6 1.7479 -2.4856 0.0044 17 1 0.6579 -2.4748 -0.0044 18 6 2.2773 -3.2758 1.2231 19 6 2.5649 -4.6917 0.6903 20 7 2.1877 -4.7020 -0.7398 21 6 3.0780 -5.5782 -1.5128 22 6 2.2979 -3.2934 -1.1978 23 1 -0.3634 0.0022 1.0276 24 1 -0.3633 0.8888 -0.5158 25 1 -0.3634 -0.8911 -0.5120 26 1 5.4036 1.8848 0.5021 27 1 5.9927 0.2052 0.5006 28 1 8.8100 2.1353 -0.8761 29 1 3.1928 -2.8204 1.6005 30 1 1.5218 -3.3116 2.0080 31 1 3.6255 -4.9200 0.7962 32 1 1.9688 -5.4223 1.2369 33 1 3.0136 -6.5949 -1.1251 34 1 2.7769 -5.5690 -2.5604 35 1 4.1041 -5.2208 -1.4265 36 1 1.6860 -3.1281 -2.0846 37 1 3.3381 -3.0325 -1.3930 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259322027.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:28 Heat of formation + Delta-G solvation = 31.688645 kcal Electronic energy + Delta-G solvation = -17968.161381 eV Core-core repulsion = 15257.470262 eV Total energy + Delta-G solvation = -2710.691118 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.86790 -38.02311 -33.94025 -32.63214 -31.57151 -29.54520 -28.81092 -26.17341 -24.95374 -23.90023 -22.19157 -20.93080 -20.49828 -18.08142 -17.12521 -16.48978 -15.96814 -15.38988 -14.71984 -14.28005 -14.04595 -13.85460 -13.44811 -13.04251 -12.79235 -12.67679 -12.59173 -12.33860 -11.99538 -11.53186 -11.46355 -11.41896 -11.30606 -11.07605 -10.79773 -10.74321 -10.48859 -10.32966 -10.06904 -9.54401 -8.78676 -8.57406 -8.50504 -8.39493 -7.87025 -6.15517 -4.19910 1.42089 2.03472 2.49657 3.24925 3.31992 3.36300 3.44924 4.08013 4.36457 4.66281 4.88795 4.98476 5.09119 5.21318 5.31288 5.34564 5.42113 5.48591 5.52842 5.61653 5.68985 5.77498 5.86779 5.91217 5.97245 6.06593 6.16407 6.17666 6.26943 6.44386 6.82830 6.90298 7.04400 7.27469 7.36645 7.78641 8.10247 8.57102 8.82052 9.43999 10.94659 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.016754 B = 0.006060 C = 0.004963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.801653 B = 4619.310463 C = 5640.823936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.262 4.262 3 S 0.079 5.921 4 C 0.125 3.875 5 C 0.085 3.915 6 C -0.511 4.511 7 H 0.059 0.941 8 C 0.062 3.938 9 N -0.891 5.891 10 Si 0.900 3.100 11 H -0.272 1.272 12 H -0.281 1.281 13 H -0.282 1.282 14 N -0.489 5.489 15 C 0.077 3.923 16 C -0.012 4.012 17 H 0.092 0.908 18 C -0.119 4.119 19 C 0.038 3.962 20 N -0.525 5.525 21 C 0.016 3.984 22 C 0.044 3.956 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.042 0.958 27 H 0.053 0.947 28 H 0.264 0.736 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.031 0.969 36 H 0.078 0.922 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.142 -8.134 2.189 15.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.383 4.383 3 S 0.337 5.663 4 C -0.153 4.153 5 C 0.045 3.955 6 C -0.551 4.551 7 H 0.077 0.923 8 C -0.140 4.140 9 N -0.530 5.530 10 Si 0.727 3.273 11 H -0.196 1.196 12 H -0.207 1.207 13 H -0.208 1.208 14 N -0.203 5.203 15 C -0.056 4.056 16 C -0.034 4.034 17 H 0.110 0.890 18 C -0.158 4.158 19 C -0.090 4.090 20 N -0.249 5.249 21 C -0.133 4.133 22 C -0.084 4.084 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.050 0.950 36 H 0.096 0.904 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.222 -7.575 2.164 15.391 hybrid contribution 1.055 -0.370 -0.891 1.429 sum -12.168 -7.945 1.273 14.587 Atomic orbital electron populations 1.20087 0.87860 1.02471 1.01926 1.25399 1.00630 0.95297 1.16948 1.83877 0.99979 1.12364 1.70108 1.28040 1.02098 0.89559 0.95596 1.18139 0.81440 0.96882 0.99087 1.20933 0.98471 1.45141 0.90565 0.92294 1.24958 0.96366 0.95028 0.97651 1.69950 1.07420 1.44728 1.30868 0.86402 0.78788 0.77852 0.84259 1.19626 1.20726 1.20773 1.66123 1.15843 1.19293 1.18994 1.19811 0.88057 0.95326 1.02388 1.20542 0.99329 0.88143 0.95378 0.88983 1.22414 1.02026 0.94141 0.97208 1.22848 0.99315 0.97466 0.89404 1.64766 1.49728 1.07669 1.02713 1.22497 0.94761 0.97268 0.98801 1.23257 1.01198 0.86693 0.97207 0.91543 0.91764 0.90986 0.93948 0.92923 0.92609 0.90295 0.91274 0.93567 0.90635 0.91586 0.91434 0.94998 0.90365 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.78 9.94 36.00 0.36 -0.42 16 2 C -0.26 -4.36 6.59 -35.92 -0.24 -4.60 16 3 S 0.08 1.48 23.18 -107.50 -2.49 -1.01 16 4 C 0.13 2.81 6.58 -13.46 -0.09 2.72 16 5 C 0.08 2.18 5.56 -29.04 -0.16 2.02 16 6 C -0.51 -14.22 9.09 -34.44 -0.31 -14.53 16 7 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 8 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 9 N -0.89 -25.77 13.29 55.43 0.74 -25.04 16 10 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 11 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 N -0.49 -10.53 9.86 -8.06 -0.08 -10.61 16 15 C 0.08 1.38 5.42 -84.22 -0.46 0.93 16 16 C -0.01 -0.18 3.32 -89.92 -0.30 -0.48 16 17 H 0.09 1.19 6.40 -51.93 -0.33 0.86 16 18 C -0.12 -1.65 6.49 -25.37 -0.16 -1.81 16 19 C 0.04 0.48 6.70 -2.75 -0.02 0.46 16 20 N -0.52 -7.08 5.55 -238.72 -1.33 -8.41 16 21 C 0.02 0.19 9.40 60.06 0.56 0.75 16 22 C 0.04 0.67 5.99 -1.90 -0.01 0.66 16 23 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.07 0.78 6.83 -51.93 -0.35 0.42 16 26 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.05 1.45 8.14 -51.93 -0.42 1.02 16 28 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.08 1.26 7.58 -51.93 -0.39 0.87 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.61 7.73 -51.93 -0.40 0.20 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.03 0.41 8.00 -51.93 -0.42 -0.01 16 36 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.06 1.13 7.60 -51.93 -0.39 0.73 16 LS Contribution 316.74 15.07 4.77 4.77 Total: -1.00 -29.46 316.74 -9.97 -39.43 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -5.64 Total: -2.84 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: -0.92 Total: -12.66 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: -0.67 Total: -44.05 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -2.49 Total: -1.01 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.46 -9.97 -39.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259322027.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.119 kcal (2) G-P(sol) polarization free energy of solvation -29.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds