Wall clock time and date at job start Mon Mar 30 2020 06:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 S 1.76201 * 126.03894 * 2 1 4 4 C 1.70980 * 90.28233 * 180.16985 * 3 2 1 5 5 C 1.50696 * 124.91351 * 179.83940 * 4 3 2 6 6 C 1.50700 * 109.47099 * 269.99429 * 5 4 3 7 7 H 1.08001 * 120.00019 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99897 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00123 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99908 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47048 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47274 * 119.99987 * 10 8 6 13 13 H 1.48503 * 109.46908 * 239.99886 * 10 8 6 14 14 N 1.29028 * 110.16623 * 359.83491 * 4 3 2 15 15 C 1.31785 * 117.12813 * 0.02562 * 14 4 3 16 16 C 1.50695 * 122.75111 * 179.97438 * 15 14 4 17 17 H 1.09002 * 110.64491 * 180.72272 * 16 15 14 18 18 C 1.54595 * 110.72434 * 57.57107 * 16 15 14 19 19 C 1.53993 * 105.14156 * 219.50415 * 18 16 15 20 20 N 1.47908 * 107.05700 * 358.77979 * 19 18 16 21 21 C 1.46898 * 110.99980 * 145.84080 * 20 19 18 22 22 C 1.48534 * 105.81788 * 25.32512 * 20 19 18 23 23 H 1.08997 * 109.47699 * 270.12478 * 1 2 3 24 24 H 1.08999 * 109.46954 * 30.12630 * 1 2 3 25 25 H 1.09002 * 109.47311 * 150.12110 * 1 2 3 26 26 H 1.09001 * 109.47707 * 30.00287 * 5 4 3 27 27 H 1.09004 * 109.47310 * 150.00066 * 5 4 3 28 28 H 0.97005 * 119.99885 * 179.97438 * 9 8 6 29 29 H 1.08997 * 110.30815 * 338.42445 * 18 16 15 30 30 H 1.09002 * 110.30868 * 100.49297 * 18 16 15 31 31 H 1.09000 * 109.91656 * 118.12702 * 19 18 16 32 32 H 1.08993 * 109.92023 * 239.42133 * 19 18 16 33 33 H 1.08999 * 109.47214 * 59.87355 * 21 20 19 34 34 H 1.09004 * 109.46687 * 179.86980 * 21 20 19 35 35 H 1.08993 * 109.47205 * 299.87247 * 21 20 19 36 36 H 1.09000 * 110.66603 * 202.35749 * 22 20 19 37 37 H 1.09003 * 110.66913 * 79.23401 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5436 1.4248 0.0000 4 6 3.9311 0.4257 -0.0051 5 6 5.3531 0.9245 -0.0111 6 6 5.8214 1.0899 -1.4339 7 1 5.1558 0.8575 -2.2520 8 6 7.0997 1.5379 -1.6912 9 7 7.9105 1.8205 -0.6950 10 14 7.6800 1.7436 -3.4548 11 1 6.5862 1.3612 -4.3836 12 1 8.0569 3.1606 -3.6899 13 1 8.8584 0.8719 -3.6930 14 7 3.5844 -0.8171 -0.0029 15 6 2.2931 -1.0807 0.0020 16 6 1.7479 -2.4856 0.0044 17 1 0.6579 -2.4748 -0.0044 18 6 2.2773 -3.2758 1.2231 19 6 2.5649 -4.6917 0.6903 20 7 2.1877 -4.7020 -0.7398 21 6 3.0780 -5.5782 -1.5128 22 6 2.2979 -3.2934 -1.1978 23 1 -0.3634 0.0022 1.0276 24 1 -0.3633 0.8888 -0.5158 25 1 -0.3634 -0.8911 -0.5120 26 1 5.4036 1.8848 0.5021 27 1 5.9927 0.2052 0.5006 28 1 8.8100 2.1353 -0.8761 29 1 3.1928 -2.8204 1.6005 30 1 1.5218 -3.3116 2.0080 31 1 3.6255 -4.9200 0.7962 32 1 1.9688 -5.4223 1.2369 33 1 3.0136 -6.5949 -1.1251 34 1 2.7769 -5.5690 -2.5604 35 1 4.1041 -5.2208 -1.4265 36 1 1.6860 -3.1281 -2.0846 37 1 3.3381 -3.0325 -1.3930 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259322027.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:27 Heat of formation + Delta-G solvation = 12.766854 kcal Electronic energy + Delta-G solvation = -17968.981891 eV Core-core repulsion = 15257.470262 eV Total energy + Delta-G solvation = -2711.511629 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.23344 -39.25895 -35.76246 -34.26322 -32.70148 -31.29845 -30.01483 -27.50192 -26.31346 -25.54461 -23.69589 -22.12581 -21.79864 -19.54910 -18.70492 -18.47391 -17.18338 -16.61169 -16.52945 -15.71168 -15.27787 -15.08913 -14.60070 -14.45147 -14.33669 -14.08493 -13.92842 -13.62393 -13.41207 -13.23113 -12.82986 -12.64837 -12.54412 -12.51428 -12.41358 -12.18808 -12.08197 -11.72107 -11.58128 -11.50186 -10.70429 -10.33766 -10.04627 -9.51723 -9.34913 -8.29033 -6.42695 -0.09169 0.55455 0.96506 1.36308 1.36867 1.50107 1.91971 2.36160 2.98098 3.03377 3.37714 3.74767 3.80114 3.94148 4.18932 4.24382 4.34352 4.44681 4.47641 4.53393 4.57509 4.72400 4.79426 4.86514 4.90887 4.94509 4.99352 5.05469 5.09479 5.16124 5.20641 5.31914 5.49217 5.60800 5.80022 5.98323 5.99241 6.64442 7.04375 7.25629 8.81159 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.016754 B = 0.006060 C = 0.004963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.801653 B = 4619.310463 C = 5640.823936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.235 4.235 3 S 0.106 5.894 4 C 0.072 3.928 5 C 0.097 3.903 6 C -0.528 4.528 7 H 0.050 0.950 8 C 0.012 3.988 9 N -0.924 5.924 10 Si 0.967 3.033 11 H -0.269 1.269 12 H -0.269 1.269 13 H -0.276 1.276 14 N -0.504 5.504 15 C 0.050 3.950 16 C -0.008 4.008 17 H 0.123 0.877 18 C -0.117 4.117 19 C 0.038 3.962 20 N -0.520 5.520 21 C 0.014 3.986 22 C 0.046 3.954 23 H 0.090 0.910 24 H 0.078 0.922 25 H 0.095 0.905 26 H 0.027 0.973 27 H 0.017 0.983 28 H 0.269 0.731 29 H 0.046 0.954 30 H 0.095 0.905 31 H 0.034 0.966 32 H 0.102 0.898 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.014 0.986 36 H 0.088 0.912 37 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.021 -8.939 1.468 18.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.356 4.356 3 S 0.363 5.637 4 C -0.205 4.205 5 C 0.057 3.943 6 C -0.567 4.567 7 H 0.068 0.932 8 C -0.187 4.187 9 N -0.564 5.564 10 Si 0.791 3.209 11 H -0.193 1.193 12 H -0.194 1.194 13 H -0.201 1.201 14 N -0.219 5.219 15 C -0.081 4.081 16 C -0.029 4.029 17 H 0.141 0.859 18 C -0.156 4.156 19 C -0.090 4.090 20 N -0.244 5.244 21 C -0.134 4.134 22 C -0.082 4.082 23 H 0.109 0.891 24 H 0.097 0.903 25 H 0.113 0.887 26 H 0.045 0.955 27 H 0.035 0.965 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.114 0.886 31 H 0.053 0.947 32 H 0.120 0.880 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.032 0.968 36 H 0.106 0.894 37 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -16.099 -8.389 1.450 18.211 hybrid contribution 1.842 -0.154 -0.615 1.948 sum -14.257 -8.543 0.835 16.642 Atomic orbital electron populations 1.20352 0.83894 1.04323 1.04011 1.26103 1.02819 0.93504 1.13145 1.83593 0.98331 1.12513 1.69261 1.27318 1.02073 0.91071 1.00087 1.17694 0.83761 0.95181 0.97673 1.21162 0.98873 1.45348 0.91361 0.93182 1.25849 0.96355 0.94446 1.02068 1.70056 1.07893 1.45299 1.33103 0.85363 0.78243 0.78386 0.78883 1.19282 1.19372 1.20127 1.66050 1.18468 1.19371 1.17991 1.20262 0.86861 0.97411 1.03580 1.20684 1.00696 0.86163 0.95401 0.85938 1.22399 1.01307 0.94253 0.97634 1.22917 0.99217 0.97521 0.89301 1.64843 1.49849 1.06614 1.03103 1.22570 0.93528 0.97947 0.99403 1.23177 0.99041 0.88000 0.98010 0.89126 0.90316 0.88678 0.95486 0.96513 0.92170 0.93511 0.88610 0.94727 0.87972 0.89460 0.90578 0.96754 0.89414 0.95822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.31 9.94 71.23 0.71 -0.61 16 2 C -0.23 -7.28 6.59 24.64 0.16 -7.12 16 3 S 0.11 3.95 23.18 -56.49 -1.31 2.64 16 4 C 0.07 3.38 6.58 88.52 0.58 3.96 16 5 C 0.10 5.34 5.56 29.10 0.16 5.50 16 6 C -0.53 -30.68 9.09 25.60 0.23 -30.44 16 7 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 8 C 0.01 0.69 5.46 84.65 0.46 1.16 16 9 N -0.92 -55.26 13.29 21.45 0.28 -54.97 16 10 Si 0.97 44.52 29.54 68.60 2.03 46.55 16 11 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 12 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 13 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 14 N -0.50 -22.48 9.86 -179.40 -1.77 -24.25 16 15 C 0.05 1.77 5.42 41.52 0.23 2.00 16 16 C -0.01 -0.22 3.32 -10.34 -0.03 -0.26 16 17 H 0.12 2.63 6.40 -2.39 -0.02 2.62 16 18 C -0.12 -3.07 6.49 31.47 0.20 -2.86 16 19 C 0.04 0.91 6.70 86.44 0.58 1.49 16 20 N -0.52 -13.10 5.55 -909.16 -5.05 -18.15 16 21 C 0.01 0.32 9.40 127.69 1.20 1.52 16 22 C 0.05 1.35 5.99 86.65 0.52 1.87 16 23 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.09 1.53 6.83 -2.39 -0.02 1.51 16 26 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.27 14.97 8.31 -92.70 -0.77 14.20 16 29 H 0.05 1.52 7.58 -2.39 -0.02 1.50 16 30 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.03 0.90 7.73 -2.39 -0.02 0.88 16 32 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 35 H 0.01 0.36 8.00 -2.39 -0.02 0.35 16 36 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.02 0.87 7.60 -2.39 -0.02 0.85 16 Total: -1.00 -66.89 316.74 0.23 -66.65 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: 1.05 Total: 5.32 kcal Atomic # 6 Polarization: -28.79 SS G_CDS: 5.00 Total: -23.79 kcal Atomic # 7 Polarization: -90.84 SS G_CDS: -6.53 Total: -97.38 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Atomic # 16 Polarization: 3.95 SS G_CDS: -1.31 Total: 2.64 kcal Total: -66.89 0.23 -66.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259322027.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.420 kcal (2) G-P(sol) polarization free energy of solvation -66.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds