Wall clock time and date at job start Mon Mar 30 2020 06:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31779 * 122.74892 * 2 1 4 4 C 1.29028 * 117.12646 * 179.97438 * 3 2 1 5 5 C 1.50697 * 124.91900 * 179.97438 * 4 3 2 6 6 H 1.09000 * 110.29111 * 177.84856 * 5 4 3 7 7 C 1.54257 * 110.32385 * 299.97478 * 5 4 3 8 8 C 1.54381 * 105.06319 * 118.89625 * 7 5 4 9 9 N 1.48568 * 104.59346 * 23.85070 * 8 7 5 10 10 C 1.46897 * 110.99978 * 200.96334 * 9 8 7 11 11 C 1.48558 * 104.22163 * 320.51988 * 9 8 7 12 12 S 1.70978 * 110.16487 * 359.97438 * 4 3 2 13 13 C 1.33640 * 122.75089 * 179.70352 * 2 1 3 14 14 C 1.50704 * 126.03531 * 0.03849 * 13 2 1 15 15 C 1.50699 * 109.46823 * 89.99938 * 14 13 2 16 16 H 1.08004 * 120.00508 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99625 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00192 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99853 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46841 * 89.99647 * 19 17 15 21 21 H 1.48489 * 109.47120 * 209.99919 * 19 17 15 22 22 H 1.48497 * 109.46884 * 330.00312 * 19 17 15 23 23 H 1.09002 * 109.47152 * 90.02752 * 1 2 3 24 24 H 1.09001 * 109.46980 * 330.02853 * 1 2 3 25 25 H 1.09004 * 109.47113 * 210.02834 * 1 2 3 26 26 H 1.09001 * 110.32623 * 237.78868 * 7 5 4 27 27 H 1.09006 * 110.32723 * 0.02562 * 7 5 4 28 28 H 1.08998 * 110.41911 * 142.62822 * 8 7 5 29 29 H 1.08998 * 110.41140 * 264.95918 * 8 7 5 30 30 H 1.09000 * 109.47558 * 59.87703 * 10 9 8 31 31 H 1.09006 * 109.46993 * 179.87858 * 10 9 8 32 32 H 1.08996 * 109.47065 * 299.87259 * 10 9 8 33 33 H 1.09004 * 110.41403 * 280.70450 * 11 9 8 34 34 H 1.08998 * 110.41584 * 158.25758 * 11 9 8 35 35 H 1.09000 * 109.46971 * 209.99922 * 14 13 2 36 36 H 1.08995 * 109.47016 * 330.00100 * 14 13 2 37 37 H 0.97000 * 119.99895 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1083 0.0000 4 6 3.5040 0.9819 0.0005 5 6 4.4835 2.1271 0.0001 6 1 5.5056 1.7503 0.0390 7 6 4.2829 3.0032 -1.2537 8 6 3.9054 4.3986 -0.7118 9 7 4.4667 4.4306 0.6634 10 6 3.7956 5.4489 1.4823 11 6 4.2103 3.0669 1.1940 12 16 3.9333 -0.6731 0.0018 13 6 2.2300 -1.1239 0.0058 14 6 1.6847 -2.5288 0.0123 15 6 1.5037 -3.0039 -1.4064 16 1 1.7585 -2.3537 -2.2303 17 6 1.0139 -4.2690 -1.6525 18 7 0.7050 -5.0613 -0.6493 19 14 0.7902 -4.8582 -3.4111 20 1 2.0364 -5.5204 -3.8735 21 1 -0.3353 -5.8250 -3.4698 22 1 0.4919 -3.6974 -4.2878 23 1 -0.3633 -0.0005 -1.0277 24 1 -0.3633 0.8903 0.5134 25 1 -0.3633 -0.8898 0.5143 26 1 5.2071 3.0579 -1.8291 27 1 3.4757 2.6051 -1.8686 28 1 4.3562 5.1792 -1.3246 29 1 2.8221 4.5156 -0.6850 30 1 2.7309 5.2231 1.5426 31 1 4.2242 5.4495 2.4845 32 1 3.9337 6.4298 1.0275 33 1 3.1745 2.9747 1.5211 34 1 4.8906 2.8447 2.0161 35 1 2.3826 -3.1871 0.5297 36 1 0.7233 -2.5430 0.5256 37 1 0.3607 -5.9514 -0.8225 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259435458.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:44 Heat of formation + Delta-G solvation = 31.673087 kcal Electronic energy + Delta-G solvation = -17806.669656 eV Core-core repulsion = 15095.977863 eV Total energy + Delta-G solvation = -2710.691793 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.72876 -38.40477 -34.00759 -32.83779 -31.11257 -29.28718 -28.72846 -26.23190 -25.52867 -23.55297 -22.45826 -21.20626 -20.36106 -17.91633 -17.24925 -16.45881 -15.93383 -15.64028 -14.64057 -14.49116 -14.08013 -14.07036 -13.49602 -12.95162 -12.66812 -12.42256 -12.28640 -12.15384 -12.07798 -11.64037 -11.56512 -11.33696 -11.22473 -11.13328 -10.90905 -10.79470 -10.67455 -10.26150 -9.98353 -9.63778 -8.98536 -8.63393 -8.51369 -8.46255 -7.77536 -6.14911 -4.20013 1.45098 2.01775 2.49337 3.24903 3.31296 3.34701 3.44233 3.92240 4.35957 4.47296 4.69138 4.77051 5.01431 5.20319 5.23319 5.29342 5.35907 5.48895 5.62167 5.70611 5.72836 5.83991 5.92933 5.95121 6.05147 6.11429 6.19447 6.26264 6.47774 6.51004 6.69768 6.87468 7.00087 7.34916 7.41553 7.79172 8.14086 8.39864 8.83233 9.44561 10.94489 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.035738 B = 0.004452 C = 0.004403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.290972 B = 6288.171559 C = 6357.171009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.017 3.983 3 N -0.459 5.459 4 C 0.008 3.992 5 C -0.004 4.004 6 H 0.094 0.906 7 C -0.110 4.110 8 C 0.035 3.965 9 N -0.517 5.517 10 C 0.014 3.986 11 C 0.045 3.955 12 S 0.090 5.910 13 C -0.137 4.137 14 C 0.084 3.916 15 C -0.514 4.514 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.897 3.103 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.273 1.273 23 H 0.068 0.932 24 H 0.057 0.943 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.048 0.952 30 H 0.030 0.970 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.081 0.919 35 H 0.032 0.968 36 H 0.047 0.953 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.952 15.506 2.568 16.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.112 4.112 3 N -0.173 5.173 4 C -0.270 4.270 5 C -0.027 4.027 6 H 0.112 0.888 7 C -0.149 4.149 8 C -0.093 4.093 9 N -0.241 5.241 10 C -0.135 4.135 11 C -0.084 4.084 12 S 0.346 5.654 13 C -0.257 4.257 14 C 0.045 3.955 15 C -0.553 4.553 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.724 3.276 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.197 1.197 23 H 0.086 0.914 24 H 0.076 0.924 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.066 0.934 30 H 0.049 0.951 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.050 0.950 36 H 0.064 0.936 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.173 15.463 2.630 17.247 hybrid contribution -1.907 -0.648 -0.943 2.224 sum 5.266 14.815 1.688 15.814 Atomic orbital electron populations 1.20164 0.87547 1.01975 1.02420 1.19966 0.97870 0.86048 1.07322 1.65868 1.04419 1.32308 1.14739 1.26295 0.94160 0.97478 1.09033 1.20334 0.95709 0.90680 0.95974 0.88798 1.22330 1.02286 0.93736 0.96566 1.23095 0.98170 0.97656 0.90365 1.65405 1.52489 1.03671 1.02513 1.22487 0.96806 0.95874 0.98331 1.23163 1.01049 0.87645 0.96552 1.83818 1.10169 1.01726 1.69691 1.26583 0.92728 1.03176 1.03251 1.17933 0.96387 0.82810 0.98366 1.20991 1.43992 0.99327 0.90947 0.92434 1.24980 0.95108 0.96486 0.97436 1.69939 1.43774 1.08639 1.30679 0.86499 0.77906 0.78688 0.84458 1.20465 1.21007 1.19747 0.91361 0.92420 0.90529 0.90700 0.90500 0.90276 0.93378 0.95137 0.91370 0.91422 0.92290 0.90020 0.94978 0.93559 0.92621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.13 10.07 36.01 0.36 -0.77 16 2 C 0.02 0.35 6.74 -84.22 -0.57 -0.22 16 3 N -0.46 -8.74 10.17 -8.06 -0.08 -8.82 16 4 C 0.01 0.14 5.73 -13.46 -0.08 0.07 16 5 C 0.00 -0.06 3.55 -90.39 -0.32 -0.38 16 6 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 7 C -0.11 -1.37 6.64 -25.35 -0.17 -1.54 16 8 C 0.04 0.40 6.49 -2.18 -0.01 0.39 16 9 N -0.52 -6.07 5.66 -238.22 -1.35 -7.42 16 10 C 0.01 0.14 9.53 60.06 0.57 0.71 16 11 C 0.05 0.58 6.03 -2.18 -0.01 0.57 16 12 S 0.09 1.67 23.18 -107.50 -2.49 -0.82 16 13 C -0.14 -2.99 5.78 -35.92 -0.21 -3.20 16 14 C 0.08 2.12 5.19 -29.03 -0.15 1.97 16 15 C -0.51 -14.02 9.09 -34.44 -0.31 -14.33 16 16 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -25.52 13.29 55.43 0.74 -24.78 16 19 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 24 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.08 1.43 6.71 -51.93 -0.35 1.08 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.08 1.09 7.69 -51.93 -0.40 0.69 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.59 7.97 -51.93 -0.41 0.18 16 30 H 0.03 0.31 7.98 -51.93 -0.41 -0.10 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.85 7.35 -51.93 -0.38 0.47 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.05 1.20 6.75 -51.93 -0.35 0.85 16 37 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 317.22 15.07 4.78 4.78 Total: -1.00 -29.01 317.22 -10.08 -39.09 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -5.65 Total: -2.99 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: -0.99 Total: -15.13 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: -0.69 Total: -41.02 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -2.49 Total: -0.82 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.01 -10.08 -39.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259435458.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.762 kcal (2) G-P(sol) polarization free energy of solvation -29.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds