Wall clock time and date at job start Mon Mar 30 2020 06:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31779 * 122.74892 * 2 1 4 4 C 1.29028 * 117.12646 * 179.97438 * 3 2 1 5 5 C 1.50697 * 124.91900 * 179.97438 * 4 3 2 6 6 H 1.09000 * 110.29111 * 177.84856 * 5 4 3 7 7 C 1.54257 * 110.32385 * 299.97478 * 5 4 3 8 8 C 1.54381 * 105.06319 * 118.89625 * 7 5 4 9 9 N 1.48568 * 104.59346 * 23.85070 * 8 7 5 10 10 C 1.46897 * 110.99978 * 200.96334 * 9 8 7 11 11 C 1.48558 * 104.22163 * 320.51988 * 9 8 7 12 12 S 1.70978 * 110.16487 * 359.97438 * 4 3 2 13 13 C 1.33640 * 122.75089 * 179.70352 * 2 1 3 14 14 C 1.50704 * 126.03531 * 0.03849 * 13 2 1 15 15 C 1.50699 * 109.46823 * 89.99938 * 14 13 2 16 16 H 1.08004 * 120.00508 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99625 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00192 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99853 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46841 * 89.99647 * 19 17 15 21 21 H 1.48489 * 109.47120 * 209.99919 * 19 17 15 22 22 H 1.48497 * 109.46884 * 330.00312 * 19 17 15 23 23 H 1.09002 * 109.47152 * 90.02752 * 1 2 3 24 24 H 1.09001 * 109.46980 * 330.02853 * 1 2 3 25 25 H 1.09004 * 109.47113 * 210.02834 * 1 2 3 26 26 H 1.09001 * 110.32623 * 237.78868 * 7 5 4 27 27 H 1.09006 * 110.32723 * 0.02562 * 7 5 4 28 28 H 1.08998 * 110.41911 * 142.62822 * 8 7 5 29 29 H 1.08998 * 110.41140 * 264.95918 * 8 7 5 30 30 H 1.09000 * 109.47558 * 59.87703 * 10 9 8 31 31 H 1.09006 * 109.46993 * 179.87858 * 10 9 8 32 32 H 1.08996 * 109.47065 * 299.87259 * 10 9 8 33 33 H 1.09004 * 110.41403 * 280.70450 * 11 9 8 34 34 H 1.08998 * 110.41584 * 158.25758 * 11 9 8 35 35 H 1.09000 * 109.46971 * 209.99922 * 14 13 2 36 36 H 1.08995 * 109.47016 * 330.00100 * 14 13 2 37 37 H 0.97000 * 119.99895 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1083 0.0000 4 6 3.5040 0.9819 0.0005 5 6 4.4835 2.1271 0.0001 6 1 5.5056 1.7503 0.0390 7 6 4.2829 3.0032 -1.2537 8 6 3.9054 4.3986 -0.7118 9 7 4.4667 4.4306 0.6634 10 6 3.7956 5.4489 1.4823 11 6 4.2103 3.0669 1.1940 12 16 3.9333 -0.6731 0.0018 13 6 2.2300 -1.1239 0.0058 14 6 1.6847 -2.5288 0.0123 15 6 1.5037 -3.0039 -1.4064 16 1 1.7585 -2.3537 -2.2303 17 6 1.0139 -4.2690 -1.6525 18 7 0.7050 -5.0613 -0.6493 19 14 0.7902 -4.8582 -3.4111 20 1 2.0364 -5.5204 -3.8735 21 1 -0.3353 -5.8250 -3.4698 22 1 0.4919 -3.6974 -4.2878 23 1 -0.3633 -0.0005 -1.0277 24 1 -0.3633 0.8903 0.5134 25 1 -0.3633 -0.8898 0.5143 26 1 5.2071 3.0579 -1.8291 27 1 3.4757 2.6051 -1.8686 28 1 4.3562 5.1792 -1.3246 29 1 2.8221 4.5156 -0.6850 30 1 2.7309 5.2231 1.5426 31 1 4.2242 5.4495 2.4845 32 1 3.9337 6.4298 1.0275 33 1 3.1745 2.9747 1.5211 34 1 4.8906 2.8447 2.0161 35 1 2.3826 -3.1871 0.5297 36 1 0.7233 -2.5430 0.5256 37 1 0.3607 -5.9514 -0.8225 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259435458.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:44 Heat of formation + Delta-G solvation = 13.698025 kcal Electronic energy + Delta-G solvation = -17807.449113 eV Core-core repulsion = 15095.977863 eV Total energy + Delta-G solvation = -2711.471250 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.09644 -39.55532 -35.79369 -34.31479 -32.58846 -30.80659 -29.94608 -27.60113 -26.98562 -24.89114 -24.25738 -22.14624 -21.57924 -19.44494 -18.68924 -18.56405 -17.02434 -16.82067 -16.45755 -15.83297 -15.29634 -15.19207 -14.71554 -14.35564 -14.24355 -13.99634 -13.84466 -13.63238 -13.40594 -13.06586 -12.79600 -12.67510 -12.54384 -12.40752 -12.30398 -12.21424 -11.98186 -11.85744 -11.67796 -11.63066 -10.66391 -10.46536 -10.03637 -9.55449 -9.37171 -8.24578 -6.38109 -0.08893 0.50048 0.94183 1.39055 1.39214 1.50613 1.87992 2.38272 2.89671 3.07239 3.29697 3.67106 3.75139 3.89490 4.26730 4.35861 4.38211 4.41679 4.52039 4.54713 4.57445 4.72956 4.74982 4.84195 4.85586 4.92689 4.99941 5.01820 5.09328 5.15721 5.22986 5.43948 5.50304 5.66410 5.76733 5.99719 6.06956 6.70282 6.86904 7.30589 8.84442 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.035738 B = 0.004452 C = 0.004403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.290972 B = 6288.171559 C = 6357.171009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.022 3.978 3 N -0.474 5.474 4 C 0.036 3.964 5 C -0.010 4.010 6 H 0.115 0.885 7 C -0.107 4.107 8 C 0.037 3.963 9 N -0.517 5.517 10 C 0.013 3.987 11 C 0.049 3.951 12 S 0.110 5.890 13 C -0.188 4.188 14 C 0.099 3.901 15 C -0.528 4.528 16 H 0.050 0.950 17 C 0.013 3.987 18 N -0.925 5.925 19 Si 0.962 3.038 20 H -0.272 1.272 21 H -0.277 1.277 22 H -0.268 1.268 23 H 0.068 0.932 24 H 0.079 0.921 25 H 0.066 0.934 26 H 0.097 0.903 27 H 0.056 0.944 28 H 0.100 0.900 29 H 0.036 0.964 30 H 0.022 0.978 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.039 0.961 34 H 0.095 0.905 35 H 0.007 0.993 36 H 0.027 0.973 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.177 17.399 1.730 18.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.107 4.107 3 N -0.189 5.189 4 C -0.243 4.243 5 C -0.032 4.032 6 H 0.133 0.867 7 C -0.147 4.147 8 C -0.090 4.090 9 N -0.241 5.241 10 C -0.136 4.136 11 C -0.080 4.080 12 S 0.367 5.633 13 C -0.309 4.309 14 C 0.060 3.940 15 C -0.566 4.566 16 H 0.068 0.932 17 C -0.186 4.186 18 N -0.564 5.564 19 Si 0.787 3.213 20 H -0.197 1.197 21 H -0.202 1.202 22 H -0.193 1.193 23 H 0.086 0.914 24 H 0.098 0.902 25 H 0.085 0.915 26 H 0.115 0.885 27 H 0.075 0.925 28 H 0.118 0.882 29 H 0.055 0.945 30 H 0.041 0.959 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.057 0.943 34 H 0.114 0.886 35 H 0.025 0.975 36 H 0.045 0.955 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.399 17.352 1.797 19.361 hybrid contribution -2.219 -1.108 -0.635 2.560 sum 6.180 16.244 1.162 17.418 Atomic orbital electron populations 1.20178 0.86691 1.02558 1.02535 1.20270 0.98830 0.86094 1.05510 1.65980 1.05099 1.31346 1.16446 1.27079 0.94268 0.97827 1.05101 1.20635 0.95547 0.89778 0.97289 0.86731 1.22336 1.02681 0.93844 0.95837 1.23118 0.97698 0.97622 0.90608 1.65458 1.52658 1.03255 1.02731 1.22559 0.96209 0.96005 0.98808 1.23111 1.00226 0.88252 0.96446 1.83620 1.07688 1.02496 1.69493 1.26242 0.95182 1.01972 1.07503 1.17522 0.94987 0.84583 0.96946 1.21232 1.43986 0.99597 0.91806 0.93165 1.25813 0.94651 0.96568 1.01558 1.70047 1.44471 1.09061 1.32808 0.85484 0.78154 0.78253 0.79437 1.19706 1.20245 1.19273 0.91364 0.90189 0.91527 0.88481 0.92483 0.88167 0.94520 0.95947 0.90380 0.89816 0.94278 0.88648 0.97522 0.95533 0.92339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.24 10.07 71.24 0.72 -1.52 16 2 C 0.02 0.92 6.74 41.52 0.28 1.20 16 3 N -0.47 -17.74 10.17 -179.40 -1.83 -19.57 16 4 C 0.04 1.19 5.73 88.52 0.51 1.69 16 5 C -0.01 -0.24 3.55 -10.64 -0.04 -0.28 16 6 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 7 C -0.11 -2.40 6.64 31.49 0.21 -2.19 16 8 C 0.04 0.76 6.49 86.45 0.56 1.32 16 9 N -0.52 -10.64 5.66 -907.60 -5.14 -15.78 16 10 C 0.01 0.22 9.53 127.69 1.22 1.43 16 11 C 0.05 1.14 6.03 86.45 0.52 1.66 16 12 S 0.11 4.04 23.18 -56.49 -1.31 2.73 16 13 C -0.19 -8.44 5.78 24.64 0.14 -8.30 16 14 C 0.10 5.19 5.19 29.10 0.15 5.34 16 15 C -0.53 -29.53 9.09 25.60 0.23 -29.30 16 16 H 0.05 2.82 7.74 -2.91 -0.02 2.79 16 17 C 0.01 0.74 5.46 84.66 0.46 1.20 16 18 N -0.92 -54.05 13.29 21.45 0.28 -53.77 16 19 Si 0.96 43.49 29.54 68.60 2.03 45.52 16 20 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 21 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 22 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 23 H 0.07 2.51 8.14 -2.39 -0.02 2.50 16 24 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 25 H 0.07 2.58 6.71 -2.38 -0.02 2.57 16 26 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.06 1.52 7.69 -2.38 -0.02 1.50 16 28 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.04 0.83 7.97 -2.39 -0.02 0.81 16 30 H 0.02 0.42 7.98 -2.39 -0.02 0.40 16 31 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.04 1.07 7.35 -2.39 -0.02 1.05 16 34 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.03 1.46 6.75 -2.39 -0.02 1.45 16 37 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -62.57 317.22 0.05 -62.52 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: 1.05 Total: 6.08 kcal Atomic # 6 Polarization: -32.71 SS G_CDS: 4.96 Total: -27.75 kcal Atomic # 7 Polarization: -82.43 SS G_CDS: -6.68 Total: -89.11 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: 4.04 SS G_CDS: -1.31 Total: 2.73 kcal Total: -62.57 0.05 -62.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259435458.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.222 kcal (2) G-P(sol) polarization free energy of solvation -62.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds