Wall clock time and date at job start Mon Mar 30 2020 06:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31785 * 122.75402 * 2 1 4 4 C 1.29023 * 117.12342 * 180.02562 * 3 2 1 5 5 C 1.50705 * 124.91281 * 179.97438 * 4 3 2 6 6 H 1.08998 * 110.64350 * 183.19199 * 5 4 3 7 7 C 1.54593 * 110.72350 * 60.04016 * 5 4 3 8 8 C 1.53993 * 105.13863 * 219.68483 * 7 5 4 9 9 N 1.47903 * 107.05709 * 358.77125 * 8 7 5 10 10 C 1.46907 * 110.99506 * 145.84435 * 9 8 7 11 11 C 1.48528 * 105.82066 * 25.33621 * 9 8 7 12 12 S 1.70974 * 110.17232 * 359.97438 * 4 3 2 13 13 C 1.33643 * 122.74824 * 180.02562 * 2 1 3 14 14 C 1.50703 * 126.03398 * 0.24443 * 13 2 1 15 15 C 1.50695 * 109.47416 * 89.71510 * 14 13 2 16 16 H 1.08002 * 119.99624 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00220 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00080 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00005 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46837 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47144 * 120.00577 * 19 17 15 22 22 H 1.48501 * 109.47024 * 240.00412 * 19 17 15 23 23 H 1.08996 * 109.47215 * 269.98329 * 1 2 3 24 24 H 1.09004 * 109.47043 * 29.98065 * 1 2 3 25 25 H 1.08991 * 109.47463 * 149.97993 * 1 2 3 26 26 H 1.09002 * 110.30934 * 338.60005 * 7 5 4 27 27 H 1.08996 * 110.30787 * 100.67243 * 7 5 4 28 28 H 1.08997 * 109.91699 * 118.12903 * 8 7 5 29 29 H 1.09001 * 109.91758 * 239.22695 * 8 7 5 30 30 H 1.08998 * 109.46863 * 60.13047 * 10 9 8 31 31 H 1.09001 * 109.46966 * 180.12613 * 10 9 8 32 32 H 1.08993 * 109.47239 * 300.13007 * 10 9 8 33 33 H 1.09001 * 110.66554 * 202.35509 * 11 9 8 34 34 H 1.09000 * 110.67309 * 79.22177 * 11 9 8 35 35 H 1.09008 * 109.46826 * 209.71694 * 14 13 2 36 36 H 1.09000 * 109.47032 * 329.70986 * 14 13 2 37 37 H 0.96998 * 120.00032 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2200 1.1083 0.0000 4 6 3.5040 0.9817 -0.0005 5 6 4.4836 2.1269 -0.0012 6 1 5.5072 1.7570 -0.0583 7 6 4.2910 3.0123 1.2514 8 6 4.4647 4.4586 0.7522 9 7 4.7690 4.3851 -0.6933 10 6 4.1872 5.5263 -1.4124 11 6 4.1839 3.1042 -1.1656 12 16 3.9332 -0.6732 -0.0004 13 6 2.2299 -1.1240 -0.0005 14 6 1.6845 -2.5289 -0.0063 15 6 1.5012 -2.9907 -1.4290 16 1 1.7539 -2.3326 -2.2472 17 6 1.0108 -4.2534 -1.6862 18 7 0.7026 -5.0546 -0.6899 19 14 0.7830 -4.8256 -3.4498 20 1 1.1995 -3.7445 -4.3786 21 1 1.6148 -6.0320 -3.6901 22 1 -0.6462 -5.1554 -3.6824 23 1 -0.3633 -0.0003 1.0276 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3634 -0.8897 -0.5141 26 1 3.2919 2.8719 1.6640 27 1 5.0459 2.7761 2.0013 28 1 3.5432 5.0190 0.9097 29 1 5.2865 4.9387 1.2836 30 1 4.6007 6.4540 -1.0169 31 1 4.4240 5.4463 -2.4734 32 1 3.1052 5.5255 -1.2806 33 1 4.6728 2.7725 -2.0816 34 1 3.1091 3.2045 -1.3165 35 1 2.3833 -3.1920 0.5038 36 1 0.7239 -2.5478 0.5085 37 1 0.3573 -5.9428 -0.8708 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259435459.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:47 Heat of formation + Delta-G solvation = 30.868040 kcal Electronic energy + Delta-G solvation = -17754.621810 eV Core-core repulsion = 15043.895108 eV Total energy + Delta-G solvation = -2710.726702 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.69872 -38.45352 -34.01774 -32.83087 -31.11889 -29.31828 -28.72612 -26.23233 -25.52217 -23.59532 -22.47179 -21.08268 -20.46132 -17.92800 -17.25656 -16.45273 -15.97331 -15.64225 -14.64683 -14.33946 -14.14967 -13.92178 -13.60605 -13.05983 -12.69787 -12.45834 -12.28030 -12.13246 -12.08327 -11.62298 -11.54731 -11.41852 -11.33550 -11.09021 -10.92053 -10.77259 -10.67589 -10.26223 -9.97580 -9.62433 -8.98519 -8.58341 -8.52292 -8.45610 -7.76530 -6.15185 -4.20448 1.44869 2.02137 2.49781 3.23773 3.31635 3.35923 3.43943 3.89054 4.35920 4.45065 4.68855 4.78994 4.98169 5.19888 5.22538 5.23410 5.34192 5.45381 5.59456 5.70659 5.73248 5.82840 5.91398 5.96807 6.01891 6.13466 6.18284 6.24728 6.51023 6.55914 6.72723 6.87782 7.02707 7.34288 7.41657 7.79221 8.13891 8.40060 8.83542 9.44398 10.94167 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.032002 B = 0.004478 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.729171 B = 6250.671039 C = 6386.936602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.017 3.983 3 N -0.459 5.459 4 C 0.010 3.990 5 C -0.004 4.004 6 H 0.097 0.903 7 C -0.118 4.118 8 C 0.038 3.962 9 N -0.524 5.524 10 C 0.016 3.984 11 C 0.049 3.951 12 S 0.091 5.909 13 C -0.136 4.136 14 C 0.084 3.916 15 C -0.514 4.514 16 H 0.058 0.942 17 C 0.062 3.938 18 N -0.891 5.891 19 Si 0.897 3.103 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.086 0.914 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.045 0.955 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.029 0.971 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.033 0.967 36 H 0.046 0.954 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.235 15.643 2.270 16.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.112 4.112 3 N -0.174 5.174 4 C -0.269 4.269 5 C -0.026 4.026 6 H 0.115 0.885 7 C -0.157 4.157 8 C -0.090 4.090 9 N -0.248 5.248 10 C -0.132 4.132 11 C -0.081 4.081 12 S 0.347 5.653 13 C -0.257 4.257 14 C 0.044 3.956 15 C -0.553 4.553 16 H 0.077 0.923 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.724 3.276 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.104 0.896 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.064 0.936 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.048 0.952 33 H 0.101 0.899 34 H 0.079 0.921 35 H 0.051 0.949 36 H 0.064 0.936 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.455 15.489 2.216 17.332 hybrid contribution -1.908 -0.430 -0.840 2.129 sum 5.547 15.059 1.375 16.107 Atomic orbital electron populations 1.20219 0.87567 1.03098 1.01742 1.19971 0.97872 0.86014 1.07319 1.65867 1.04418 1.32377 1.14718 1.26185 0.94081 0.97454 1.09131 1.20479 0.95805 0.90443 0.95891 0.88524 1.22457 1.03059 0.93268 0.96956 1.22851 1.00032 0.96937 0.89173 1.64751 1.54570 1.02300 1.03178 1.22500 0.97309 0.93965 0.99463 1.23261 0.99054 0.88326 0.97418 1.83815 1.10171 1.01686 1.69618 1.26602 0.92712 1.03192 1.03159 1.17931 0.96433 0.82809 0.98385 1.21037 1.43938 0.99357 0.90941 0.92339 1.24983 0.95121 0.96442 0.97473 1.69950 1.43755 1.08441 1.30832 0.86450 0.77912 0.78760 0.84474 1.19619 1.20803 1.20778 0.92082 0.92125 0.89558 0.90400 0.90752 0.93641 0.90365 0.91442 0.91300 0.95221 0.89876 0.92120 0.94931 0.93591 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.23 9.82 36.00 0.35 -0.87 16 2 C 0.02 0.35 6.74 -84.22 -0.57 -0.21 16 3 N -0.46 -8.77 10.07 -8.06 -0.08 -8.85 16 4 C 0.01 0.16 5.98 -13.46 -0.08 0.08 16 5 C 0.00 -0.05 3.55 -89.91 -0.32 -0.37 16 6 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 7 C -0.12 -1.42 6.50 -25.38 -0.16 -1.58 16 8 C 0.04 0.41 6.70 -2.75 -0.02 0.39 16 9 N -0.52 -6.14 5.55 -238.71 -1.33 -7.46 16 10 C 0.02 0.16 9.40 60.07 0.56 0.73 16 11 C 0.05 0.64 5.99 -1.90 -0.01 0.63 16 12 S 0.09 1.69 23.18 -107.50 -2.49 -0.80 16 13 C -0.14 -2.97 5.78 -35.92 -0.21 -3.18 16 14 C 0.08 2.10 4.90 -29.04 -0.14 1.96 16 15 C -0.51 -13.97 9.09 -34.44 -0.31 -14.29 16 16 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -25.46 13.29 55.43 0.74 -24.72 16 19 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 23 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.09 1.71 7.35 -51.93 -0.38 1.33 16 26 H 0.08 1.06 7.71 -51.93 -0.40 0.66 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.48 7.73 -51.93 -0.40 0.08 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.03 0.30 8.00 -51.93 -0.42 -0.12 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 0.90 7.62 -51.93 -0.40 0.50 16 35 H 0.03 0.86 8.14 -51.92 -0.42 0.44 16 36 H 0.05 1.19 7.43 -51.93 -0.39 0.81 16 37 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 318.02 15.07 4.79 4.79 Total: -1.00 -28.93 318.02 -10.12 -39.05 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: -5.73 Total: -2.95 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: -1.00 Total: -15.11 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: -0.67 Total: -41.04 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.49 Total: -0.80 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.93 -10.12 -39.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259435459.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.920 kcal (2) G-P(sol) polarization free energy of solvation -28.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds