Wall clock time and date at job start Mon Mar 30 2020 06:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31785 * 122.75402 * 2 1 4 4 C 1.29023 * 117.12342 * 180.02562 * 3 2 1 5 5 C 1.50705 * 124.91281 * 179.97438 * 4 3 2 6 6 H 1.08998 * 110.64350 * 183.19199 * 5 4 3 7 7 C 1.54593 * 110.72350 * 60.04016 * 5 4 3 8 8 C 1.53993 * 105.13863 * 219.68483 * 7 5 4 9 9 N 1.47903 * 107.05709 * 358.77125 * 8 7 5 10 10 C 1.46907 * 110.99506 * 145.84435 * 9 8 7 11 11 C 1.48528 * 105.82066 * 25.33621 * 9 8 7 12 12 S 1.70974 * 110.17232 * 359.97438 * 4 3 2 13 13 C 1.33643 * 122.74824 * 180.02562 * 2 1 3 14 14 C 1.50703 * 126.03398 * 0.24443 * 13 2 1 15 15 C 1.50695 * 109.47416 * 89.71510 * 14 13 2 16 16 H 1.08002 * 119.99624 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00220 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00080 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00005 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46837 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47144 * 120.00577 * 19 17 15 22 22 H 1.48501 * 109.47024 * 240.00412 * 19 17 15 23 23 H 1.08996 * 109.47215 * 269.98329 * 1 2 3 24 24 H 1.09004 * 109.47043 * 29.98065 * 1 2 3 25 25 H 1.08991 * 109.47463 * 149.97993 * 1 2 3 26 26 H 1.09002 * 110.30934 * 338.60005 * 7 5 4 27 27 H 1.08996 * 110.30787 * 100.67243 * 7 5 4 28 28 H 1.08997 * 109.91699 * 118.12903 * 8 7 5 29 29 H 1.09001 * 109.91758 * 239.22695 * 8 7 5 30 30 H 1.08998 * 109.46863 * 60.13047 * 10 9 8 31 31 H 1.09001 * 109.46966 * 180.12613 * 10 9 8 32 32 H 1.08993 * 109.47239 * 300.13007 * 10 9 8 33 33 H 1.09001 * 110.66554 * 202.35509 * 11 9 8 34 34 H 1.09000 * 110.67309 * 79.22177 * 11 9 8 35 35 H 1.09008 * 109.46826 * 209.71694 * 14 13 2 36 36 H 1.09000 * 109.47032 * 329.70986 * 14 13 2 37 37 H 0.96998 * 120.00032 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2200 1.1083 0.0000 4 6 3.5040 0.9817 -0.0005 5 6 4.4836 2.1269 -0.0012 6 1 5.5072 1.7570 -0.0583 7 6 4.2910 3.0123 1.2514 8 6 4.4647 4.4586 0.7522 9 7 4.7690 4.3851 -0.6933 10 6 4.1872 5.5263 -1.4124 11 6 4.1839 3.1042 -1.1656 12 16 3.9332 -0.6732 -0.0004 13 6 2.2299 -1.1240 -0.0005 14 6 1.6845 -2.5289 -0.0063 15 6 1.5012 -2.9907 -1.4290 16 1 1.7539 -2.3326 -2.2472 17 6 1.0108 -4.2534 -1.6862 18 7 0.7026 -5.0546 -0.6899 19 14 0.7830 -4.8256 -3.4498 20 1 1.1995 -3.7445 -4.3786 21 1 1.6148 -6.0320 -3.6901 22 1 -0.6462 -5.1554 -3.6824 23 1 -0.3633 -0.0003 1.0276 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3634 -0.8897 -0.5141 26 1 3.2919 2.8719 1.6640 27 1 5.0459 2.7761 2.0013 28 1 3.5432 5.0190 0.9097 29 1 5.2865 4.9387 1.2836 30 1 4.6007 6.4540 -1.0169 31 1 4.4240 5.4463 -2.4734 32 1 3.1052 5.5255 -1.2806 33 1 4.6728 2.7725 -2.0816 34 1 3.1091 3.2045 -1.3165 35 1 2.3833 -3.1920 0.5038 36 1 0.7239 -2.5478 0.5085 37 1 0.3573 -5.9428 -0.8708 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259435459.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:47 Heat of formation + Delta-G solvation = 13.109989 kcal Electronic energy + Delta-G solvation = -17755.391857 eV Core-core repulsion = 15043.895108 eV Total energy + Delta-G solvation = -2711.496749 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.06790 -39.59213 -35.80328 -34.30931 -32.57863 -30.81446 -29.95214 -27.60851 -26.97664 -24.87921 -24.29788 -22.04802 -21.64482 -19.45456 -18.69382 -18.56318 -17.03514 -16.83268 -16.45959 -15.78030 -15.19006 -15.16600 -14.66769 -14.40248 -14.25444 -14.05282 -13.89042 -13.60240 -13.47582 -13.07654 -12.80746 -12.69524 -12.49329 -12.46356 -12.38145 -12.18964 -11.97728 -11.87375 -11.65631 -11.59539 -10.67080 -10.46548 -10.03530 -9.47895 -9.36312 -8.24541 -6.38093 -0.09315 0.50208 0.94469 1.38005 1.39466 1.51867 1.87643 2.38396 2.87922 3.07216 3.28674 3.67854 3.73474 3.90909 4.26438 4.32996 4.38518 4.40168 4.51296 4.54642 4.55367 4.73046 4.76565 4.84940 4.90660 4.92059 4.99752 5.00939 5.08696 5.20105 5.23979 5.42954 5.51902 5.66701 5.80861 6.01588 6.07119 6.70714 6.86864 7.30802 8.84620 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.032002 B = 0.004478 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.729171 B = 6250.671039 C = 6386.936602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.023 3.977 3 N -0.474 5.474 4 C 0.037 3.963 5 C -0.009 4.009 6 H 0.114 0.886 7 C -0.114 4.114 8 C 0.040 3.960 9 N -0.527 5.527 10 C 0.015 3.985 11 C 0.053 3.947 12 S 0.110 5.890 13 C -0.188 4.188 14 C 0.099 3.901 15 C -0.527 4.527 16 H 0.050 0.950 17 C 0.014 3.986 18 N -0.924 5.924 19 Si 0.962 3.038 20 H -0.269 1.269 21 H -0.275 1.275 22 H -0.274 1.274 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.094 0.906 28 H 0.047 0.953 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.024 0.976 33 H 0.087 0.913 34 H 0.041 0.959 35 H 0.007 0.993 36 H 0.026 0.974 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.384 17.546 1.681 19.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.107 4.107 3 N -0.189 5.189 4 C -0.242 4.242 5 C -0.032 4.032 6 H 0.132 0.868 7 C -0.153 4.153 8 C -0.087 4.087 9 N -0.251 5.251 10 C -0.133 4.133 11 C -0.077 4.077 12 S 0.367 5.633 13 C -0.308 4.308 14 C 0.060 3.940 15 C -0.565 4.565 16 H 0.068 0.932 17 C -0.186 4.186 18 N -0.564 5.564 19 Si 0.787 3.213 20 H -0.193 1.193 21 H -0.201 1.201 22 H -0.199 1.199 23 H 0.095 0.905 24 H 0.096 0.904 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.112 0.888 28 H 0.065 0.935 29 H 0.117 0.883 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.043 0.957 33 H 0.105 0.895 34 H 0.060 0.940 35 H 0.025 0.975 36 H 0.044 0.956 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.604 17.389 1.631 19.470 hybrid contribution -2.196 -0.893 -0.614 2.449 sum 6.407 16.497 1.017 17.727 Atomic orbital electron populations 1.20217 0.86654 1.02834 1.02682 1.20282 0.98855 0.86047 1.05471 1.65979 1.05074 1.31416 1.16433 1.26952 0.94189 0.97791 1.05239 1.20754 0.95498 0.89549 0.97367 0.86750 1.22452 1.02750 0.93706 0.96440 1.22904 1.01007 0.96079 0.88746 1.64802 1.54458 1.02047 1.03769 1.22572 0.97038 0.93950 0.99788 1.23172 0.98018 0.89199 0.97321 1.83625 1.07738 1.02458 1.69431 1.26255 0.95122 1.01997 1.07450 1.17513 0.94999 0.84571 0.96952 1.21258 1.43914 0.99580 0.91782 0.93174 1.25806 0.94674 0.96497 1.01583 1.70053 1.44468 1.08893 1.32946 0.85438 0.78167 0.78284 0.79440 1.19304 1.20079 1.19945 0.90534 0.90412 0.91603 0.92121 0.88777 0.93504 0.88292 0.89654 0.90786 0.95732 0.89512 0.94027 0.97459 0.95599 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.39 9.82 71.23 0.70 -1.69 16 2 C 0.02 0.94 6.74 41.52 0.28 1.22 16 3 N -0.47 -17.77 10.07 -179.40 -1.81 -19.57 16 4 C 0.04 1.23 5.98 88.52 0.53 1.76 16 5 C -0.01 -0.22 3.55 -10.33 -0.04 -0.26 16 6 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 7 C -0.11 -2.43 6.50 31.47 0.20 -2.22 16 8 C 0.04 0.75 6.70 86.45 0.58 1.33 16 9 N -0.53 -10.83 5.55 -909.16 -5.05 -15.88 16 10 C 0.01 0.25 9.40 127.69 1.20 1.45 16 11 C 0.05 1.28 5.99 86.65 0.52 1.79 16 12 S 0.11 4.06 23.18 -56.49 -1.31 2.75 16 13 C -0.19 -8.40 5.78 24.64 0.14 -8.26 16 14 C 0.10 5.19 4.90 29.10 0.14 5.33 16 15 C -0.53 -29.45 9.09 25.60 0.23 -29.21 16 16 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 17 C 0.01 0.75 5.46 84.65 0.46 1.22 16 18 N -0.92 -53.94 13.29 21.45 0.28 -53.66 16 19 Si 0.96 43.51 29.54 68.60 2.03 45.54 16 20 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 21 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 23 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 24 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 25 H 0.07 2.69 7.35 -2.39 -0.02 2.68 16 26 H 0.06 1.53 7.71 -2.39 -0.02 1.51 16 27 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.05 0.86 7.73 -2.39 -0.02 0.85 16 29 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.02 0.44 8.00 -2.39 -0.02 0.42 16 33 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.04 1.17 7.62 -2.39 -0.02 1.16 16 35 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 36 H 0.03 1.42 7.43 -2.39 -0.02 1.40 16 37 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -62.40 318.02 0.15 -62.26 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: 1.04 Total: 6.11 kcal Atomic # 6 Polarization: -32.50 SS G_CDS: 4.95 Total: -27.55 kcal Atomic # 7 Polarization: -82.54 SS G_CDS: -6.57 Total: -89.11 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: 4.06 SS G_CDS: -1.31 Total: 2.75 kcal Total: -62.40 0.15 -62.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259435459.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.366 kcal (2) G-P(sol) polarization free energy of solvation -62.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds