Wall clock time and date at job start Mon Mar 30 2020 07:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46837 * 111.00382 * 2 1 4 4 C 1.53039 * 109.52728 * 185.84166 * 3 2 1 5 5 C 1.53124 * 109.27475 * 300.82281 * 4 3 2 6 6 C 1.53121 * 109.15999 * 57.65288 * 5 4 3 7 7 H 1.08994 * 109.50244 * 62.32579 * 6 5 4 8 8 C 1.50703 * 109.50130 * 182.40171 * 6 5 4 9 9 N 1.29024 * 124.91718 * 240.02322 * 8 6 5 10 10 C 1.31781 * 117.12463 * 179.97438 * 9 8 6 11 11 C 1.50705 * 122.75046 * 180.02562 * 10 9 8 12 12 C 1.50695 * 109.47380 * 265.00375 * 11 10 9 13 13 H 1.08005 * 120.00055 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99999 * 180.02562 * 12 11 10 15 15 N 1.31519 * 120.00240 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00107 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47148 * 89.99561 * 16 14 12 18 18 H 1.48503 * 109.47223 * 209.99579 * 16 14 12 19 19 H 1.48497 * 109.46879 * 329.99543 * 16 14 12 20 20 C 1.33642 * 114.50181 * 0.02562 * 10 9 8 21 21 S 1.70978 * 124.91472 * 60.02612 * 8 6 5 22 22 C 1.46852 * 110.99806 * 124.21741 * 2 1 3 23 23 H 1.09001 * 109.46576 * 56.04413 * 1 2 3 24 24 H 1.09004 * 109.47273 * 176.04165 * 1 2 3 25 25 H 1.08995 * 109.46892 * 296.04773 * 1 2 3 26 26 H 1.08998 * 109.46176 * 65.82414 * 3 2 1 27 27 H 1.09005 * 109.45582 * 305.85307 * 3 2 1 28 28 H 1.08998 * 109.50817 * 180.88731 * 4 3 2 29 29 H 1.08998 * 109.53464 * 60.77971 * 4 3 2 30 30 H 1.09002 * 109.52179 * 297.74517 * 5 4 3 31 31 H 1.08999 * 109.57449 * 177.58628 * 5 4 3 32 32 H 1.09001 * 109.46858 * 25.00697 * 11 10 9 33 33 H 1.09005 * 109.46811 * 145.00561 * 11 10 9 34 34 H 0.96996 * 119.99890 * 179.97438 * 15 14 12 35 35 H 1.07997 * 126.03754 * 180.02562 * 20 10 9 36 36 H 1.08991 * 109.46654 * 54.13939 * 22 2 1 37 37 H 1.09005 * 109.45545 * 294.17250 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3708 0.0000 4 6 3.5182 1.3341 -0.1468 5 6 4.1189 0.5367 1.0143 6 6 3.5181 -0.8717 1.0207 7 1 3.7819 -1.3840 0.0955 8 6 4.0598 -1.6444 2.1957 9 7 4.7331 -2.7417 2.1110 10 6 5.1339 -3.2895 3.2405 11 6 5.9281 -4.5694 3.2892 12 6 4.9932 -5.7332 3.4951 13 1 3.9302 -5.5631 3.5824 14 6 5.4948 -7.0150 3.5730 15 7 6.7893 -7.2222 3.4671 16 14 4.3358 -8.4578 3.8275 17 1 3.8944 -8.9768 2.5081 18 1 5.0396 -9.5328 4.5721 19 1 3.1521 -8.0106 4.6047 20 6 4.7785 -2.6170 4.3394 21 16 3.8710 -1.1937 3.8342 22 6 1.9953 -0.7710 1.1337 23 1 -0.3632 0.5740 -0.8525 24 1 -0.3634 -1.0252 -0.0709 25 1 -0.3633 0.4513 0.9233 26 1 1.7326 1.8607 0.9376 27 1 1.5635 1.9255 -0.8331 28 1 3.9101 2.3510 -0.1309 29 1 3.7820 0.8570 -1.0907 30 1 3.8888 1.0352 1.9560 31 1 5.1999 0.4710 0.8916 32 1 6.4674 -4.6982 2.3508 33 1 6.6394 -4.5244 4.1139 34 1 7.1422 -8.1240 3.5223 35 1 5.0077 -2.8963 5.3571 36 1 1.5634 -1.7716 1.1241 37 1 1.7324 -0.2710 2.0660 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259473358.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:14 Heat of formation + Delta-G solvation = 30.466900 kcal Electronic energy + Delta-G solvation = -17752.042454 eV Core-core repulsion = 15041.298357 eV Total energy + Delta-G solvation = -2710.744097 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.63483 -38.64097 -34.21802 -33.11532 -31.86527 -29.85271 -27.29687 -26.89396 -24.86890 -23.40654 -22.96630 -21.26926 -20.10328 -18.75149 -16.97382 -16.34016 -15.87574 -15.30219 -15.00870 -14.64245 -14.54950 -14.25516 -13.63782 -13.31602 -12.96742 -12.60241 -12.52988 -12.43054 -12.14976 -11.82911 -11.52125 -11.34646 -11.11914 -10.95297 -10.74517 -10.62761 -10.55502 -10.43627 -9.73327 -9.46181 -8.98314 -8.81074 -8.49530 -8.42163 -7.91208 -6.04596 -4.07626 1.34768 1.95150 2.34728 3.31632 3.36984 3.40181 3.58649 3.74378 4.42269 4.47686 4.70745 4.73003 4.88916 5.04946 5.20462 5.25552 5.31070 5.33532 5.41969 5.53227 5.56651 5.69277 5.72674 5.80282 5.86587 5.98637 6.04687 6.11235 6.26878 6.37111 6.86220 6.89310 7.04279 7.47866 7.56382 7.90748 8.28620 8.57346 8.94878 9.55278 11.05871 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.026789 B = 0.004526 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.954304 B = 6184.850974 C = 6601.474848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.542 5.542 3 C 0.053 3.947 4 C -0.115 4.115 5 C -0.114 4.114 6 C -0.004 4.004 7 H 0.107 0.893 8 C 0.048 3.952 9 N -0.454 5.454 10 C 0.111 3.889 11 C 0.084 3.916 12 C -0.509 4.509 13 H 0.055 0.945 14 C 0.060 3.940 15 N -0.894 5.894 16 Si 0.897 3.103 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.274 1.274 20 C -0.260 4.260 21 S 0.044 5.956 22 C 0.065 3.935 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.025 0.975 26 H 0.033 0.967 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.039 0.961 33 H 0.037 0.963 34 H 0.263 0.737 35 H 0.171 0.829 36 H 0.082 0.918 37 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.297 18.139 -4.213 20.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.266 5.266 3 C -0.075 4.075 4 C -0.153 4.153 5 C -0.153 4.153 6 C -0.026 4.026 7 H 0.125 0.875 8 C -0.232 4.232 9 N -0.168 5.168 10 C -0.018 4.018 11 C 0.044 3.956 12 C -0.548 4.548 13 H 0.073 0.927 14 C -0.142 4.142 15 N -0.533 5.533 16 Si 0.725 3.275 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.199 1.199 20 C -0.398 4.398 21 S 0.296 5.704 22 C -0.064 4.064 23 H 0.087 0.913 24 H 0.089 0.911 25 H 0.043 0.957 26 H 0.051 0.949 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.189 0.811 36 H 0.100 0.900 37 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -9.375 18.363 -4.624 21.130 hybrid contribution -0.407 -1.349 1.065 1.766 sum -9.782 17.015 -3.559 19.947 Atomic orbital electron populations 1.22350 0.86977 1.02537 1.00355 1.61840 1.07709 1.13632 1.43420 1.22142 0.95801 0.89131 1.00414 1.21577 0.94210 1.00143 0.99347 1.21707 1.00814 0.93905 0.98873 1.19703 0.93638 0.94429 0.94858 0.87471 1.26788 1.02434 0.96896 0.97035 1.66202 1.11272 1.07628 1.31695 1.21246 0.97411 0.98161 0.84992 1.18004 0.93740 0.84907 0.98917 1.20970 0.93294 0.90596 1.49933 0.92666 1.24969 0.95180 0.98833 0.95199 1.69951 1.11551 1.21624 1.50128 0.86504 0.80771 0.81926 0.78320 1.20509 1.21092 1.19880 1.26707 1.09655 0.99000 1.04423 1.83403 1.54762 1.27702 1.04484 1.22152 0.93960 0.98921 0.91388 0.91308 0.91119 0.95679 0.94880 0.90679 0.91131 0.90646 0.91835 0.90917 0.94286 0.94487 0.92763 0.81120 0.89997 0.94385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.59 60.07 0.58 0.81 16 2 N -0.54 -5.98 4.91 -242.96 -1.19 -7.17 16 3 C 0.05 0.49 5.46 -3.84 -0.02 0.47 16 4 C -0.11 -1.07 6.09 -26.65 -0.16 -1.23 16 5 C -0.11 -1.31 5.20 -26.60 -0.14 -1.45 16 6 C 0.00 -0.05 2.78 -91.69 -0.25 -0.31 16 7 H 0.11 1.64 8.14 -51.93 -0.42 1.22 16 8 C 0.05 0.85 6.04 -13.46 -0.08 0.77 16 9 N -0.45 -10.01 10.53 -8.05 -0.08 -10.10 16 10 C 0.11 2.58 5.93 -84.22 -0.50 2.08 16 11 C 0.08 2.26 5.39 -29.03 -0.16 2.10 16 12 C -0.51 -14.67 9.09 -34.44 -0.31 -14.98 16 13 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 16 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 20 C -0.26 -5.20 11.14 29.12 0.32 -4.88 16 21 S 0.04 0.71 22.45 -107.50 -2.41 -1.70 16 22 C 0.06 0.82 4.65 -3.83 -0.02 0.80 16 23 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.71 7.86 -51.93 -0.41 0.30 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.04 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.17 3.15 8.06 -52.49 -0.42 2.73 16 36 H 0.08 1.13 8.12 -51.93 -0.42 0.71 16 37 H 0.04 0.47 7.90 -51.93 -0.41 0.06 16 LS Contribution 316.31 15.07 4.77 4.77 Total: -1.00 -30.96 316.31 -9.90 -40.86 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: -5.85 Total: -3.39 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -0.84 Total: -14.18 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: -0.54 Total: -43.21 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: 0.71 SS G_CDS: -2.41 Total: -1.70 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.96 -9.90 -40.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259473358.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.325 kcal (2) G-P(sol) polarization free energy of solvation -30.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds