Wall clock time and date at job start Mon Mar 30 2020 07:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46837 * 111.00382 * 2 1 4 4 C 1.53039 * 109.52728 * 185.84166 * 3 2 1 5 5 C 1.53124 * 109.27475 * 300.82281 * 4 3 2 6 6 C 1.53121 * 109.15999 * 57.65288 * 5 4 3 7 7 H 1.08994 * 109.50244 * 62.32579 * 6 5 4 8 8 C 1.50703 * 109.50130 * 182.40171 * 6 5 4 9 9 N 1.29024 * 124.91718 * 240.02322 * 8 6 5 10 10 C 1.31781 * 117.12463 * 179.97438 * 9 8 6 11 11 C 1.50705 * 122.75046 * 180.02562 * 10 9 8 12 12 C 1.50695 * 109.47380 * 265.00375 * 11 10 9 13 13 H 1.08005 * 120.00055 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99999 * 180.02562 * 12 11 10 15 15 N 1.31519 * 120.00240 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00107 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47148 * 89.99561 * 16 14 12 18 18 H 1.48503 * 109.47223 * 209.99579 * 16 14 12 19 19 H 1.48497 * 109.46879 * 329.99543 * 16 14 12 20 20 C 1.33642 * 114.50181 * 0.02562 * 10 9 8 21 21 S 1.70978 * 124.91472 * 60.02612 * 8 6 5 22 22 C 1.46852 * 110.99806 * 124.21741 * 2 1 3 23 23 H 1.09001 * 109.46576 * 56.04413 * 1 2 3 24 24 H 1.09004 * 109.47273 * 176.04165 * 1 2 3 25 25 H 1.08995 * 109.46892 * 296.04773 * 1 2 3 26 26 H 1.08998 * 109.46176 * 65.82414 * 3 2 1 27 27 H 1.09005 * 109.45582 * 305.85307 * 3 2 1 28 28 H 1.08998 * 109.50817 * 180.88731 * 4 3 2 29 29 H 1.08998 * 109.53464 * 60.77971 * 4 3 2 30 30 H 1.09002 * 109.52179 * 297.74517 * 5 4 3 31 31 H 1.08999 * 109.57449 * 177.58628 * 5 4 3 32 32 H 1.09001 * 109.46858 * 25.00697 * 11 10 9 33 33 H 1.09005 * 109.46811 * 145.00561 * 11 10 9 34 34 H 0.96996 * 119.99890 * 179.97438 * 15 14 12 35 35 H 1.07997 * 126.03754 * 180.02562 * 20 10 9 36 36 H 1.08991 * 109.46654 * 54.13939 * 22 2 1 37 37 H 1.09005 * 109.45545 * 294.17250 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3708 0.0000 4 6 3.5182 1.3341 -0.1468 5 6 4.1189 0.5367 1.0143 6 6 3.5181 -0.8717 1.0207 7 1 3.7819 -1.3840 0.0955 8 6 4.0598 -1.6444 2.1957 9 7 4.7331 -2.7417 2.1110 10 6 5.1339 -3.2895 3.2405 11 6 5.9281 -4.5694 3.2892 12 6 4.9932 -5.7332 3.4951 13 1 3.9302 -5.5631 3.5824 14 6 5.4948 -7.0150 3.5730 15 7 6.7893 -7.2222 3.4671 16 14 4.3358 -8.4578 3.8275 17 1 3.8944 -8.9768 2.5081 18 1 5.0396 -9.5328 4.5721 19 1 3.1521 -8.0106 4.6047 20 6 4.7785 -2.6170 4.3394 21 16 3.8710 -1.1937 3.8342 22 6 1.9953 -0.7710 1.1337 23 1 -0.3632 0.5740 -0.8525 24 1 -0.3634 -1.0252 -0.0709 25 1 -0.3633 0.4513 0.9233 26 1 1.7326 1.8607 0.9376 27 1 1.5635 1.9255 -0.8331 28 1 3.9101 2.3510 -0.1309 29 1 3.7820 0.8570 -1.0907 30 1 3.8888 1.0352 1.9560 31 1 5.1999 0.4710 0.8916 32 1 6.4674 -4.6982 2.3508 33 1 6.6394 -4.5244 4.1139 34 1 7.1422 -8.1240 3.5223 35 1 5.0077 -2.8963 5.3571 36 1 1.5634 -1.7716 1.1241 37 1 1.7324 -0.2710 2.0660 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259473358.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:13 Heat of formation + Delta-G solvation = 10.317501 kcal Electronic energy + Delta-G solvation = -17752.916198 eV Core-core repulsion = 15041.298357 eV Total energy + Delta-G solvation = -2711.617841 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.98673 -39.78533 -35.61047 -34.81879 -33.05124 -31.45533 -29.12049 -27.68783 -26.34345 -25.14792 -23.82578 -22.59165 -21.22288 -20.14944 -18.62108 -18.38257 -16.92425 -16.63047 -16.30124 -16.00851 -15.60910 -15.41634 -14.95715 -14.62831 -14.20667 -14.06479 -13.92264 -13.66232 -13.48330 -13.18630 -13.00711 -12.64415 -12.60111 -12.42982 -12.30139 -11.82202 -11.67079 -11.62572 -11.53728 -11.41835 -10.65172 -10.49436 -10.28123 -9.49045 -9.30750 -8.24552 -6.37594 -0.15004 0.51266 0.80980 1.37066 1.39470 1.50216 1.96819 2.40194 2.76396 3.06938 3.31576 3.75768 3.76849 4.00314 4.17392 4.24490 4.37122 4.43804 4.52225 4.54554 4.59111 4.66156 4.70784 4.79718 4.94303 4.96286 5.04140 5.10065 5.15182 5.20851 5.34309 5.38906 5.45356 5.67177 6.02355 6.09567 6.14824 6.71036 7.00342 7.30253 8.85943 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.026789 B = 0.004526 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.954304 B = 6184.850974 C = 6601.474848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.555 5.555 3 C 0.051 3.949 4 C -0.110 4.110 5 C -0.111 4.111 6 C -0.004 4.004 7 H 0.089 0.911 8 C 0.045 3.955 9 N -0.502 5.502 10 C 0.079 3.921 11 C 0.093 3.907 12 C -0.529 4.529 13 H 0.049 0.951 14 C 0.008 3.992 15 N -0.928 5.928 16 Si 0.969 3.031 17 H -0.274 1.274 18 H -0.274 1.274 19 H -0.265 1.265 20 C -0.275 4.275 21 S 0.148 5.852 22 C 0.072 3.928 23 H 0.086 0.914 24 H 0.064 0.936 25 H 0.032 0.968 26 H 0.041 0.959 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.002 0.998 33 H 0.021 0.979 34 H 0.268 0.732 35 H 0.181 0.819 36 H 0.064 0.936 37 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.479 20.113 -3.934 23.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.280 5.280 3 C -0.076 4.076 4 C -0.148 4.148 5 C -0.149 4.149 6 C -0.027 4.027 7 H 0.107 0.893 8 C -0.234 4.234 9 N -0.217 5.217 10 C -0.050 4.050 11 C 0.053 3.947 12 C -0.567 4.567 13 H 0.067 0.933 14 C -0.191 4.191 15 N -0.567 5.567 16 Si 0.793 3.207 17 H -0.200 1.200 18 H -0.199 1.199 19 H -0.189 1.189 20 C -0.413 4.413 21 S 0.402 5.598 22 C -0.057 4.057 23 H 0.104 0.896 24 H 0.083 0.917 25 H 0.050 0.950 26 H 0.059 0.941 27 H 0.112 0.888 28 H 0.114 0.886 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.020 0.980 33 H 0.039 0.961 34 H 0.077 0.923 35 H 0.198 0.802 36 H 0.082 0.918 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.570 20.368 -4.345 23.824 hybrid contribution 0.250 -1.829 0.952 2.077 sum -11.319 18.539 -3.393 21.984 Atomic orbital electron populations 1.22404 0.85684 1.02660 1.01501 1.61833 1.08970 1.14757 1.42457 1.22243 0.95525 0.88168 1.01645 1.21578 0.94425 1.00954 0.97806 1.21717 1.00425 0.92286 1.00507 1.19858 0.94917 0.95355 0.92583 0.89296 1.27443 1.00565 0.95735 0.99613 1.66124 1.13744 1.09905 1.31973 1.20723 0.99435 0.98053 0.86820 1.17645 0.93582 0.87269 0.96173 1.21227 0.93224 0.91854 1.50402 0.93267 1.25903 0.96909 1.01766 0.94503 1.70071 1.13443 1.22593 1.50625 0.85395 0.78691 0.78150 0.78508 1.19961 1.19879 1.18943 1.26912 1.09507 1.00694 1.04165 1.82922 1.51784 1.23709 1.01410 1.21992 0.92528 0.98624 0.92588 0.89558 0.91722 0.94953 0.94071 0.88774 0.88608 0.91331 0.90878 0.91569 0.97977 0.96126 0.92341 0.80181 0.91755 0.93651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.59 127.69 1.22 1.62 16 2 N -0.56 -11.05 4.91 -922.59 -4.53 -15.58 16 3 C 0.05 0.78 5.46 86.33 0.47 1.25 16 4 C -0.11 -1.73 6.09 30.65 0.19 -1.54 16 5 C -0.11 -2.31 5.20 30.68 0.16 -2.15 16 6 C 0.00 -0.12 2.78 -11.49 -0.03 -0.15 16 7 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 8 C 0.05 1.59 6.04 88.52 0.53 2.12 16 9 N -0.50 -22.91 10.53 -179.39 -1.89 -24.80 16 10 C 0.08 3.83 5.93 41.52 0.25 4.08 16 11 C 0.09 5.31 5.39 29.10 0.16 5.46 16 12 C -0.53 -31.60 9.09 25.60 0.23 -31.37 16 13 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 14 C 0.01 0.45 5.46 84.65 0.46 0.92 16 15 N -0.93 -57.02 13.29 21.45 0.28 -56.73 16 16 Si 0.97 45.37 29.54 68.60 2.03 47.39 16 17 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 18 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 20 C -0.27 -10.97 11.14 66.78 0.74 -10.23 16 21 S 0.15 4.48 22.45 -56.49 -1.27 3.21 16 22 C 0.07 1.72 4.65 86.32 0.40 2.12 16 23 H 0.09 1.05 8.10 -2.39 -0.02 1.03 16 24 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 25 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.09 1.11 8.09 -2.38 -0.02 1.09 16 28 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.07 1.38 7.86 -2.39 -0.02 1.36 16 31 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 33 H 0.02 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.27 15.32 8.31 -92.71 -0.77 14.54 16 35 H 0.18 6.64 8.06 -2.91 -0.02 6.61 16 36 H 0.06 1.75 8.12 -2.39 -0.02 1.73 16 37 H 0.05 1.00 7.90 -2.38 -0.02 0.98 16 Total: -1.00 -69.41 316.31 0.45 -68.96 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: 1.03 Total: 5.41 kcal Atomic # 6 Polarization: -32.66 SS G_CDS: 4.79 Total: -27.87 kcal Atomic # 7 Polarization: -90.97 SS G_CDS: -6.13 Total: -97.11 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Atomic # 16 Polarization: 4.48 SS G_CDS: -1.27 Total: 3.21 kcal Total: -69.41 0.45 -68.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259473358.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.280 kcal (2) G-P(sol) polarization free energy of solvation -69.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds