Wall clock time and date at job start Mon Mar 30 2020 06:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31789 * 122.75290 * 2 1 4 4 C 1.29023 * 117.12532 * 180.33717 * 3 2 1 5 5 S 1.70975 * 110.16760 * 359.70956 * 4 3 2 6 6 C 1.33639 * 122.74973 * 179.79618 * 2 1 3 7 7 C 1.50698 * 126.03840 * 359.97438 * 6 2 1 8 8 H 1.09007 * 109.46929 * 14.15240 * 7 6 2 9 9 C 1.52997 * 109.47169 * 254.15372 * 7 6 2 10 10 N 1.46899 * 109.47229 * 134.15198 * 7 6 2 11 11 C 1.47903 * 110.99973 * 296.37173 * 10 7 6 12 12 C 1.53995 * 107.05884 * 214.15624 * 11 10 7 13 13 C 1.54597 * 105.14089 * 1.22734 * 12 11 10 14 14 H 1.09001 * 110.72416 * 263.59989 * 13 12 11 15 15 C 1.50693 * 110.72640 * 140.49294 * 13 12 11 16 16 H 1.08006 * 119.99954 * 241.45731 * 15 13 12 17 17 C 1.37871 * 120.00274 * 61.45440 * 15 13 12 18 18 N 1.31519 * 120.00157 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 120.00338 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47016 * 60.00169 * 19 17 15 21 21 H 1.48499 * 109.47013 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47121 * 300.00033 * 19 17 15 23 23 C 1.48539 * 110.99687 * 178.97713 * 10 7 6 24 24 H 1.09001 * 109.47459 * 270.20350 * 1 2 3 25 25 H 1.09001 * 109.47170 * 30.20181 * 1 2 3 26 26 H 1.08995 * 109.47131 * 150.20186 * 1 2 3 27 27 H 1.07999 * 124.91881 * 179.67947 * 4 3 2 28 28 H 1.09000 * 109.47527 * 179.97438 * 9 7 6 29 29 H 1.09007 * 109.47087 * 299.99771 * 9 7 6 30 30 H 1.09004 * 109.47068 * 59.99450 * 9 7 6 31 31 H 1.09004 * 109.91866 * 333.51009 * 11 10 7 32 32 H 1.08996 * 109.91874 * 94.80454 * 11 10 7 33 33 H 1.09006 * 110.30893 * 120.14047 * 12 11 10 34 34 H 1.08999 * 110.31007 * 242.31440 * 12 11 10 35 35 H 0.96992 * 120.00071 * 179.97438 * 18 17 15 36 36 H 1.08998 * 110.66391 * 278.15484 * 23 10 7 37 37 H 1.09001 * 110.66913 * 41.29174 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9818 -0.0068 5 16 3.9332 -0.6731 -0.0060 6 6 2.2299 -1.1240 0.0040 7 6 1.6846 -2.5288 0.0095 8 1 0.6241 -2.5079 -0.2414 9 6 1.8678 -3.1415 1.3995 10 7 2.4064 -3.3382 -0.9814 11 6 2.1810 -2.8253 -2.3502 12 6 2.1661 -4.0434 -3.2922 13 6 2.3640 -5.2689 -2.3708 14 1 3.4121 -5.5673 -2.3456 15 6 1.4954 -6.4169 -2.8163 16 1 0.7380 -6.8097 -2.1540 17 6 1.6674 -6.9658 -4.0693 18 7 2.5892 -6.4872 -4.8760 19 14 0.5901 -8.3884 -4.6217 20 1 -0.8335 -7.9659 -4.6075 21 1 0.9721 -8.7930 -5.9985 22 1 0.7749 -9.5369 -3.6985 23 6 1.9115 -4.7387 -0.9870 24 1 -0.3634 0.0036 1.0276 25 1 -0.3633 0.8882 -0.5170 26 1 -0.3633 -0.8917 -0.5107 27 1 4.2060 1.8025 -0.0126 28 1 1.4730 -4.1575 1.4037 29 1 2.9284 -3.1624 1.6504 30 1 1.3323 -2.5409 2.1347 31 1 1.2238 -2.3062 -2.3993 32 1 2.9882 -2.1488 -2.6309 33 1 1.2090 -4.1098 -3.8097 34 1 2.9821 -3.9754 -4.0116 35 1 2.7104 -6.8736 -5.7573 36 1 2.3742 -5.3134 -0.1847 37 1 0.8251 -4.7632 -0.9022 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259615536.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:28 Heat of formation + Delta-G solvation = 40.787614 kcal Electronic energy + Delta-G solvation = -18338.665902 eV Core-core repulsion = 15628.369344 eV Total energy + Delta-G solvation = -2710.296557 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.91270 -38.23254 -34.35851 -32.35925 -31.04140 -28.78298 -28.01170 -26.89949 -24.92026 -24.34167 -21.98635 -20.09298 -19.49818 -18.69415 -17.74519 -16.30598 -15.95054 -15.24138 -14.76569 -14.51958 -14.17967 -13.46739 -13.39593 -13.23643 -12.62700 -12.50921 -12.39812 -12.33266 -11.83410 -11.77079 -11.21942 -11.07399 -10.97298 -10.91508 -10.66837 -10.56733 -10.24540 -9.67687 -9.51546 -9.28479 -9.03162 -8.78269 -8.58802 -8.40939 -7.85419 -6.03619 -4.07460 0.84411 1.54260 1.98155 2.86716 3.30080 3.35344 3.37241 4.28119 4.38641 4.53061 4.87847 5.17610 5.27038 5.30007 5.36257 5.43793 5.60293 5.72076 5.74312 5.84625 5.93765 6.03421 6.05932 6.20702 6.29068 6.33753 6.39236 6.51085 6.81523 7.09509 7.15253 7.51996 7.63266 7.65319 7.81218 7.84595 8.01442 8.41534 8.94786 9.56972 11.06059 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.034371 B = 0.004769 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.450824 B = 5870.244373 C = 5998.549005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.045 3.955 3 N -0.470 5.470 4 C -0.011 4.011 5 S 0.165 5.835 6 C -0.191 4.191 7 C 0.144 3.856 8 H 0.060 0.940 9 C -0.140 4.140 10 N -0.516 5.516 11 C 0.037 3.963 12 C -0.101 4.101 13 C 0.054 3.946 14 H 0.036 0.964 15 C -0.518 4.518 16 H 0.055 0.945 17 C 0.065 3.935 18 N -0.887 5.887 19 Si 0.890 3.110 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.043 3.957 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.194 0.806 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.027 0.973 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.261 0.739 36 H 0.065 0.935 37 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.017 11.610 10.216 15.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.087 4.087 3 N -0.185 5.185 4 C -0.308 4.308 5 S 0.419 5.581 6 C -0.313 4.313 7 C 0.033 3.967 8 H 0.078 0.922 9 C -0.197 4.197 10 N -0.241 5.241 11 C -0.091 4.091 12 C -0.139 4.139 13 C 0.035 3.965 14 H 0.054 0.946 15 C -0.556 4.556 16 H 0.073 0.927 17 C -0.137 4.137 18 N -0.525 5.525 19 Si 0.718 3.282 20 H -0.204 1.204 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.083 4.083 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.210 0.790 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.045 0.955 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 1.417 11.663 10.174 15.541 hybrid contribution -2.221 -0.555 -0.690 2.391 sum -0.804 11.108 9.484 14.628 Atomic orbital electron populations 1.20333 0.87537 1.03154 1.02552 1.20154 0.98051 0.86300 1.04241 1.66166 1.05233 1.31642 1.15410 1.28255 0.95392 1.01192 1.05981 1.84178 1.06937 1.00815 1.66142 1.25781 0.95513 0.99937 1.10094 1.20204 0.95514 0.86335 0.94662 0.92246 1.21860 1.02639 1.00944 0.94304 1.64885 1.52341 1.03095 1.03743 1.22944 0.98123 0.98807 0.89225 1.22315 1.01385 0.92955 0.97273 1.19517 0.97118 0.92362 0.87473 0.94575 1.21035 1.18491 1.16072 1.00044 0.92686 1.24954 0.95265 0.96820 0.96704 1.69965 1.32570 1.41499 1.08461 0.86694 0.80882 0.82889 0.77733 1.20354 1.21309 1.20233 1.23378 0.97053 0.86680 1.01213 0.90999 0.90889 0.90813 0.78969 0.91393 0.91800 0.92563 0.95490 0.92267 0.92759 0.92080 0.92953 0.91615 0.94588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 10.01 36.00 0.36 -0.55 16 2 C 0.04 0.65 6.74 -84.23 -0.57 0.08 16 3 N -0.47 -6.82 10.53 -11.90 -0.13 -6.94 16 4 C -0.01 -0.13 12.23 51.58 0.63 0.50 16 5 S 0.17 2.17 23.12 -107.50 -2.49 -0.31 16 6 C -0.19 -2.80 4.66 -35.92 -0.17 -2.97 16 7 C 0.14 2.20 2.08 -68.87 -0.14 2.06 16 8 H 0.06 0.92 6.24 -51.93 -0.32 0.59 16 9 C -0.14 -1.86 9.01 37.16 0.33 -1.52 16 10 N -0.52 -9.41 5.01 -223.87 -1.12 -10.53 16 11 C 0.04 0.72 5.96 -2.75 -0.02 0.70 16 12 C -0.10 -2.34 5.51 -25.37 -0.14 -2.48 16 13 C 0.05 1.33 2.98 -89.91 -0.27 1.06 16 14 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 15 C -0.52 -13.89 8.43 -34.45 -0.29 -14.18 16 16 H 0.05 1.45 7.78 -52.48 -0.41 1.04 16 17 C 0.06 1.77 5.33 -17.82 -0.10 1.67 16 18 N -0.89 -25.20 12.44 55.43 0.69 -24.51 16 19 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 C 0.04 0.88 4.79 -1.89 -0.01 0.87 16 24 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.07 0.87 6.61 -51.93 -0.34 0.52 16 27 H 0.19 1.66 8.06 -52.49 -0.42 1.23 16 28 H 0.07 0.90 6.91 -51.93 -0.36 0.54 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.03 0.51 7.68 -51.93 -0.40 0.11 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.05 1.34 7.84 -51.93 -0.41 0.93 16 34 H 0.06 1.51 8.04 -51.93 -0.42 1.10 16 35 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 36 H 0.07 1.27 7.66 -51.93 -0.40 0.87 16 37 H 0.04 0.73 7.92 -51.93 -0.41 0.32 16 LS Contribution 311.59 15.07 4.70 4.70 Total: -1.00 -28.91 311.59 -9.30 -38.21 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -5.56 Total: -1.79 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: -0.37 Total: -14.76 kcal Atomic # 7 Polarization: -41.43 SS G_CDS: -0.56 Total: -41.99 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -2.49 Total: -0.31 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.91 -9.30 -38.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259615536.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.996 kcal (2) G-P(sol) polarization free energy of solvation -28.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds