Wall clock time and date at job start Mon Mar 30 2020 06:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31789 * 122.75290 * 2 1 4 4 C 1.29023 * 117.12532 * 180.33717 * 3 2 1 5 5 S 1.70975 * 110.16760 * 359.70956 * 4 3 2 6 6 C 1.33639 * 122.74973 * 179.79618 * 2 1 3 7 7 C 1.50698 * 126.03840 * 359.97438 * 6 2 1 8 8 H 1.09007 * 109.46929 * 14.15240 * 7 6 2 9 9 C 1.52997 * 109.47169 * 254.15372 * 7 6 2 10 10 N 1.46899 * 109.47229 * 134.15198 * 7 6 2 11 11 C 1.47903 * 110.99973 * 296.37173 * 10 7 6 12 12 C 1.53995 * 107.05884 * 214.15624 * 11 10 7 13 13 C 1.54597 * 105.14089 * 1.22734 * 12 11 10 14 14 H 1.09001 * 110.72416 * 263.59989 * 13 12 11 15 15 C 1.50693 * 110.72640 * 140.49294 * 13 12 11 16 16 H 1.08006 * 119.99954 * 241.45731 * 15 13 12 17 17 C 1.37871 * 120.00274 * 61.45440 * 15 13 12 18 18 N 1.31519 * 120.00157 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 120.00338 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47016 * 60.00169 * 19 17 15 21 21 H 1.48499 * 109.47013 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47121 * 300.00033 * 19 17 15 23 23 C 1.48539 * 110.99687 * 178.97713 * 10 7 6 24 24 H 1.09001 * 109.47459 * 270.20350 * 1 2 3 25 25 H 1.09001 * 109.47170 * 30.20181 * 1 2 3 26 26 H 1.08995 * 109.47131 * 150.20186 * 1 2 3 27 27 H 1.07999 * 124.91881 * 179.67947 * 4 3 2 28 28 H 1.09000 * 109.47527 * 179.97438 * 9 7 6 29 29 H 1.09007 * 109.47087 * 299.99771 * 9 7 6 30 30 H 1.09004 * 109.47068 * 59.99450 * 9 7 6 31 31 H 1.09004 * 109.91866 * 333.51009 * 11 10 7 32 32 H 1.08996 * 109.91874 * 94.80454 * 11 10 7 33 33 H 1.09006 * 110.30893 * 120.14047 * 12 11 10 34 34 H 1.08999 * 110.31007 * 242.31440 * 12 11 10 35 35 H 0.96992 * 120.00071 * 179.97438 * 18 17 15 36 36 H 1.08998 * 110.66391 * 278.15484 * 23 10 7 37 37 H 1.09001 * 110.66913 * 41.29174 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9818 -0.0068 5 16 3.9332 -0.6731 -0.0060 6 6 2.2299 -1.1240 0.0040 7 6 1.6846 -2.5288 0.0095 8 1 0.6241 -2.5079 -0.2414 9 6 1.8678 -3.1415 1.3995 10 7 2.4064 -3.3382 -0.9814 11 6 2.1810 -2.8253 -2.3502 12 6 2.1661 -4.0434 -3.2922 13 6 2.3640 -5.2689 -2.3708 14 1 3.4121 -5.5673 -2.3456 15 6 1.4954 -6.4169 -2.8163 16 1 0.7380 -6.8097 -2.1540 17 6 1.6674 -6.9658 -4.0693 18 7 2.5892 -6.4872 -4.8760 19 14 0.5901 -8.3884 -4.6217 20 1 -0.8335 -7.9659 -4.6075 21 1 0.9721 -8.7930 -5.9985 22 1 0.7749 -9.5369 -3.6985 23 6 1.9115 -4.7387 -0.9870 24 1 -0.3634 0.0036 1.0276 25 1 -0.3633 0.8882 -0.5170 26 1 -0.3633 -0.8917 -0.5107 27 1 4.2060 1.8025 -0.0126 28 1 1.4730 -4.1575 1.4037 29 1 2.9284 -3.1624 1.6504 30 1 1.3323 -2.5409 2.1347 31 1 1.2238 -2.3062 -2.3993 32 1 2.9882 -2.1488 -2.6309 33 1 1.2090 -4.1098 -3.8097 34 1 2.9821 -3.9754 -4.0116 35 1 2.7104 -6.8736 -5.7573 36 1 2.3742 -5.3134 -0.1847 37 1 0.8251 -4.7632 -0.9022 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259615536.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:27 Heat of formation + Delta-G solvation = 22.993022 kcal Electronic energy + Delta-G solvation = -18339.437533 eV Core-core repulsion = 15628.369344 eV Total energy + Delta-G solvation = -2711.068189 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.00988 -39.73233 -35.93215 -34.11077 -32.21124 -30.49954 -29.47762 -28.07326 -26.51185 -25.63666 -23.37717 -21.62962 -21.26846 -19.80200 -18.94661 -18.17583 -17.12163 -16.81193 -16.30645 -16.07804 -15.61059 -14.75341 -14.53133 -14.41376 -14.15846 -14.00598 -13.49329 -13.43355 -13.33716 -13.10056 -12.99660 -12.68745 -12.48880 -12.34493 -12.27373 -12.00281 -11.93556 -11.57262 -11.14470 -10.82943 -10.53606 -10.49581 -10.10093 -9.60981 -9.33923 -8.12598 -6.23251 -0.17653 0.53380 0.96445 1.43013 1.43848 1.51478 1.83743 2.43210 3.07365 3.19546 3.38170 3.73403 4.07425 4.09842 4.25135 4.32603 4.34791 4.39685 4.52279 4.62037 4.73396 4.76768 4.79252 4.88791 4.95260 5.00293 5.05843 5.21850 5.25793 5.30822 5.36469 5.61303 5.78529 5.84739 6.00594 6.20914 6.38800 6.79572 6.87085 7.44981 8.96631 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.034371 B = 0.004769 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.450824 B = 5870.244373 C = 5998.549005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.043 3.957 3 N -0.496 5.496 4 C 0.006 3.994 5 S 0.161 5.839 6 C -0.215 4.215 7 C 0.146 3.854 8 H 0.062 0.938 9 C -0.135 4.135 10 N -0.516 5.516 11 C 0.052 3.948 12 C -0.091 4.091 13 C 0.045 3.955 14 H 0.002 0.998 15 C -0.533 4.533 16 H 0.058 0.942 17 C 0.014 3.986 18 N -0.919 5.919 19 Si 0.954 3.046 20 H -0.271 1.271 21 H -0.287 1.287 22 H -0.269 1.269 23 C 0.060 3.940 24 H 0.088 0.912 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.228 0.772 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.036 0.964 32 H 0.064 0.936 33 H 0.033 0.967 34 H 0.035 0.965 35 H 0.260 0.740 36 H 0.075 0.925 37 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.738 12.420 11.477 16.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.090 4.090 3 N -0.210 5.210 4 C -0.291 4.291 5 S 0.415 5.585 6 C -0.337 4.337 7 C 0.035 3.965 8 H 0.079 0.921 9 C -0.193 4.193 10 N -0.241 5.241 11 C -0.076 4.076 12 C -0.130 4.130 13 C 0.025 3.975 14 H 0.020 0.980 15 C -0.572 4.572 16 H 0.076 0.924 17 C -0.185 4.185 18 N -0.558 5.558 19 Si 0.780 3.220 20 H -0.196 1.196 21 H -0.212 1.212 22 H -0.194 1.194 23 C -0.067 4.067 24 H 0.106 0.894 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.244 0.756 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.656 12.473 11.455 16.948 hybrid contribution -1.924 -0.730 -1.065 2.317 sum -1.269 11.743 10.390 15.731 Atomic orbital electron populations 1.20404 0.86292 1.03269 1.03655 1.20502 0.99097 0.86189 1.03189 1.66248 1.06101 1.31758 1.16935 1.28876 0.95308 1.01596 1.03300 1.84202 1.06336 1.01707 1.66229 1.25676 0.96283 0.99522 1.12229 1.20235 0.95226 0.86495 0.94525 0.92055 1.21835 1.02788 1.01099 0.93531 1.64845 1.53114 1.02484 1.03625 1.22715 0.98799 0.96912 0.89139 1.22081 0.99045 0.94590 0.97248 1.19471 0.94897 0.92549 0.90540 0.97995 1.21412 1.18671 1.16799 1.00282 0.92412 1.25748 0.96496 0.99349 0.96883 1.70102 1.34127 1.42857 1.08702 0.85674 0.79283 0.79870 0.77207 1.19595 1.21243 1.19434 1.23110 0.97059 0.87845 0.98735 0.89364 0.90565 0.90854 0.75552 0.91509 0.92083 0.90511 0.94578 0.91796 0.94828 0.94630 0.93093 0.90631 0.94375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.67 10.01 71.23 0.71 -0.96 16 2 C 0.04 1.14 6.74 41.52 0.28 1.42 16 3 N -0.50 -13.22 10.53 -191.56 -2.02 -15.24 16 4 C 0.01 0.14 12.23 130.66 1.60 1.73 16 5 S 0.16 3.94 23.12 -56.49 -1.31 2.63 16 6 C -0.22 -5.90 4.66 24.64 0.11 -5.78 16 7 C 0.15 4.19 2.08 44.17 0.09 4.29 16 8 H 0.06 1.77 6.24 -2.38 -0.01 1.75 16 9 C -0.13 -3.29 9.01 71.98 0.65 -2.64 16 10 N -0.52 -18.38 5.01 -862.20 -4.32 -22.70 16 11 C 0.05 2.02 5.96 86.45 0.52 2.54 16 12 C -0.09 -4.34 5.51 31.47 0.17 -4.17 16 13 C 0.04 2.23 2.98 -10.33 -0.03 2.20 16 14 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 15 C -0.53 -28.94 8.43 25.60 0.22 -28.73 16 16 H 0.06 3.03 7.78 -2.91 -0.02 3.01 16 17 C 0.01 0.79 5.33 84.65 0.45 1.24 16 18 N -0.92 -53.51 12.44 21.45 0.27 -53.24 16 19 Si 0.95 43.15 29.54 68.60 2.03 45.18 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 21 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 22 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 23 C 0.06 2.38 4.79 86.65 0.41 2.80 16 24 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.07 1.58 6.61 -2.39 -0.02 1.57 16 27 H 0.23 3.10 8.06 -2.91 -0.02 3.08 16 28 H 0.07 1.64 6.91 -2.39 -0.02 1.62 16 29 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.04 1.33 7.68 -2.38 -0.02 1.31 16 32 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.03 1.70 7.84 -2.38 -0.02 1.68 16 34 H 0.03 1.83 8.04 -2.39 -0.02 1.81 16 35 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 36 H 0.08 2.86 7.66 -2.39 -0.02 2.84 16 37 H 0.04 1.50 7.92 -2.39 -0.02 1.48 16 Total: -1.00 -62.14 311.59 0.88 -61.27 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: 1.05 Total: 8.17 kcal Atomic # 6 Polarization: -31.25 SS G_CDS: 5.19 Total: -26.07 kcal Atomic # 7 Polarization: -85.11 SS G_CDS: -6.07 Total: -91.18 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: 3.94 SS G_CDS: -1.31 Total: 2.63 kcal Total: -62.14 0.88 -61.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259615536.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.258 kcal (2) G-P(sol) polarization free energy of solvation -62.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds