Wall clock time and date at job start Mon Mar 30 2020 06:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31785 * 122.75087 * 2 1 4 4 C 1.29025 * 117.12365 * 179.97438 * 3 2 1 5 5 S 1.70980 * 110.16834 * 359.73233 * 4 3 2 6 6 C 1.33636 * 122.74624 * 180.02562 * 2 1 3 7 7 C 1.50697 * 126.04225 * 359.97438 * 6 2 1 8 8 H 1.09002 * 109.46900 * 14.29844 * 7 6 2 9 9 C 1.53002 * 109.47435 * 254.30088 * 7 6 2 10 10 N 1.46903 * 109.47487 * 134.29844 * 7 6 2 11 11 C 1.47897 * 111.00144 * 183.88140 * 10 7 6 12 12 C 1.53990 * 107.06051 * 145.84644 * 11 10 7 13 13 C 1.54599 * 105.13709 * 358.77311 * 12 11 10 14 14 H 1.09004 * 110.72571 * 96.57821 * 13 12 11 15 15 C 1.50703 * 110.72593 * 219.68492 * 13 12 11 16 16 H 1.08002 * 119.99820 * 118.54871 * 15 13 12 17 17 C 1.37873 * 119.99996 * 298.54999 * 15 13 12 18 18 N 1.31516 * 120.00102 * 359.97438 * 17 15 13 19 19 Si 1.86793 * 120.00089 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47111 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47315 * 239.99785 * 19 17 15 22 22 H 1.48505 * 109.47349 * 119.99720 * 19 17 15 23 23 C 1.48526 * 110.99895 * 301.27847 * 10 7 6 24 24 H 1.08999 * 109.47408 * 269.99764 * 1 2 3 25 25 H 1.09006 * 109.47545 * 29.99672 * 1 2 3 26 26 H 1.08996 * 109.47687 * 149.99797 * 1 2 3 27 27 H 1.07998 * 124.91645 * 179.97438 * 4 3 2 28 28 H 1.09007 * 109.47012 * 59.99243 * 9 7 6 29 29 H 1.08994 * 109.47199 * 179.97438 * 9 7 6 30 30 H 1.08997 * 109.46676 * 300.00225 * 9 7 6 31 31 H 1.09001 * 109.91801 * 26.49136 * 11 10 7 32 32 H 1.09006 * 109.91630 * 265.19543 * 11 10 7 33 33 H 1.09002 * 110.31093 * 239.86191 * 12 11 10 34 34 H 1.08994 * 110.31126 * 117.68923 * 12 11 10 35 35 H 0.97001 * 119.99738 * 359.97438 * 18 17 15 36 36 H 1.09010 * 110.66811 * 81.84072 * 23 10 7 37 37 H 1.08997 * 110.67034 * 318.71321 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9818 0.0005 5 16 3.9332 -0.6732 0.0086 6 6 2.2298 -1.1240 -0.0005 7 6 1.6846 -2.5289 -0.0006 8 1 0.6246 -2.5072 -0.2540 9 6 1.8644 -3.1459 1.3879 10 7 2.4087 -3.3352 -0.9923 11 6 1.8388 -4.6967 -1.0866 12 6 1.9691 -5.1402 -2.5555 13 6 2.6146 -3.9392 -3.2841 14 1 3.6926 -4.0750 -3.3713 15 6 1.9922 -3.7423 -4.6424 16 1 1.4776 -2.8210 -4.8722 17 6 2.0798 -4.7383 -5.5918 18 7 2.7068 -5.8600 -5.3121 19 14 1.3078 -4.4945 -7.2752 20 1 0.6659 -3.1568 -7.3364 21 1 0.2843 -5.5452 -7.5073 22 1 2.3589 -4.5880 -8.3201 23 6 2.2819 -2.7482 -2.3507 24 1 -0.3634 0.0000 1.0276 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5138 27 1 4.2059 1.8025 0.0002 28 1 1.3271 -2.5475 2.1238 29 1 1.4696 -4.1618 1.3879 30 1 2.9243 -3.1675 1.6413 31 1 0.7886 -4.6807 -0.7952 32 1 2.3953 -5.3776 -0.4424 33 1 0.9858 -5.3532 -2.9750 34 1 2.6113 -6.0177 -2.6302 35 1 3.1080 -5.9864 -4.4381 36 1 2.9993 -1.9391 -2.4887 37 1 1.2651 -2.3958 -2.5241 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259615541.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:30 Heat of formation + Delta-G solvation = 37.966714 kcal Electronic energy + Delta-G solvation = -18482.798107 eV Core-core repulsion = 15772.379226 eV Total energy + Delta-G solvation = -2710.418881 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.93752 -38.38299 -34.64941 -32.46594 -30.96800 -28.63125 -28.18171 -26.99406 -24.74673 -23.99859 -22.36356 -20.29371 -19.52870 -18.77867 -17.80401 -16.79468 -16.08349 -15.21528 -14.67457 -14.63336 -13.83746 -13.60828 -13.44779 -13.34633 -12.65204 -12.54188 -12.41372 -12.36612 -12.22974 -11.70971 -11.40841 -11.16988 -10.96462 -10.89676 -10.69057 -10.53217 -10.13345 -9.85997 -9.50982 -9.45639 -9.01337 -8.60679 -8.49673 -8.35442 -7.96894 -6.34441 -4.07140 0.83607 1.53277 1.96549 2.86951 3.42930 3.45990 3.59716 4.26875 4.38737 4.53969 4.81153 5.16786 5.22174 5.32315 5.35891 5.38234 5.55773 5.59859 5.69854 5.72952 5.82557 5.94611 5.97301 6.03577 6.15679 6.26857 6.32955 6.36995 6.64133 6.87217 6.89758 7.22038 7.37561 7.50339 7.67702 7.81289 8.24317 8.43333 8.88509 9.65212 11.04124 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.023667 B = 0.005625 C = 0.005235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.802408 B = 4976.416368 C = 5347.361486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.049 3.951 3 N -0.470 5.470 4 C -0.007 4.007 5 S 0.163 5.837 6 C -0.195 4.195 7 C 0.145 3.855 8 H 0.060 0.940 9 C -0.138 4.138 10 N -0.517 5.517 11 C 0.041 3.959 12 C -0.121 4.121 13 C 0.038 3.962 14 H 0.028 0.972 15 C -0.595 4.595 16 H 0.049 0.951 17 C 0.021 3.979 18 N -0.913 5.913 19 Si 1.071 2.929 20 H -0.290 1.290 21 H -0.288 1.288 22 H -0.287 1.287 23 C 0.053 3.947 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.195 0.805 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.033 0.967 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.274 0.726 36 H 0.062 0.938 37 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.973 8.332 13.304 15.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.083 4.083 3 N -0.184 5.184 4 C -0.304 4.304 5 S 0.417 5.583 6 C -0.317 4.317 7 C 0.034 3.966 8 H 0.078 0.922 9 C -0.196 4.196 10 N -0.242 5.242 11 C -0.087 4.087 12 C -0.160 4.160 13 C 0.019 3.981 14 H 0.046 0.954 15 C -0.634 4.634 16 H 0.067 0.933 17 C -0.183 4.183 18 N -0.550 5.550 19 Si 0.900 3.100 20 H -0.216 1.216 21 H -0.214 1.214 22 H -0.213 1.213 23 C -0.074 4.074 24 H 0.090 0.910 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.211 0.789 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.051 0.949 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 0.097 7.631 12.030 14.247 hybrid contribution -1.413 0.934 1.205 2.079 sum -1.316 8.565 13.235 15.820 Atomic orbital electron populations 1.20338 0.87505 1.03294 1.02463 1.20150 0.98079 0.86271 1.03829 1.66168 1.05206 1.31567 1.15446 1.28266 0.95387 1.01074 1.05679 1.84151 1.06866 1.01108 1.66178 1.25670 0.95576 0.99768 1.10664 1.20196 0.95544 0.86434 0.94449 0.92220 1.21845 1.02657 1.00608 0.94484 1.64907 1.50746 1.02258 1.06286 1.22864 0.96451 0.89997 0.99366 1.22634 1.01467 1.00136 0.91727 1.19688 0.96102 0.89068 0.93256 0.95406 1.21975 1.39152 1.04398 0.97880 0.93310 1.25746 0.95942 0.92912 1.03720 1.70729 1.33323 1.25576 1.25332 0.83519 0.76239 0.75197 0.75086 1.21617 1.21397 1.21314 1.23217 0.98838 0.98757 0.86592 0.91002 0.90763 0.90833 0.78869 0.92434 0.91799 0.91780 0.94883 0.91586 0.92043 0.92652 0.91456 0.91997 0.94634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.95 10.01 36.00 0.36 -0.59 16 2 C 0.05 0.73 6.74 -84.23 -0.57 0.17 16 3 N -0.47 -7.10 10.53 -11.90 -0.13 -7.23 16 4 C -0.01 -0.09 12.23 51.58 0.63 0.54 16 5 S 0.16 2.23 22.91 -107.50 -2.46 -0.23 16 6 C -0.20 -2.94 4.35 -35.92 -0.16 -3.10 16 7 C 0.14 2.20 2.08 -68.86 -0.14 2.06 16 8 H 0.06 0.92 6.24 -51.93 -0.32 0.59 16 9 C -0.14 -1.74 9.14 37.16 0.34 -1.40 16 10 N -0.52 -9.39 5.02 -223.89 -1.12 -10.52 16 11 C 0.04 0.75 5.50 -2.76 -0.02 0.73 16 12 C -0.12 -2.73 5.34 -25.37 -0.14 -2.86 16 13 C 0.04 0.94 2.62 -89.91 -0.24 0.71 16 14 H 0.03 0.75 8.08 -51.93 -0.42 0.33 16 15 C -0.60 -16.55 8.42 -34.44 -0.29 -16.84 16 16 H 0.05 1.37 7.78 -52.49 -0.41 0.96 16 17 C 0.02 0.60 5.33 -17.82 -0.10 0.51 16 18 N -0.91 -27.05 13.42 55.43 0.74 -26.31 16 19 Si 1.07 25.17 29.90 -169.99 -5.08 20.09 16 20 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 C 0.05 1.13 5.16 -1.90 -0.01 1.12 16 24 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.07 0.90 6.61 -51.93 -0.34 0.56 16 27 H 0.19 1.78 8.06 -52.49 -0.42 1.35 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.77 7.29 -51.93 -0.38 0.39 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.03 0.56 7.64 -51.93 -0.40 0.16 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.06 1.49 7.84 -51.93 -0.41 1.08 16 34 H 0.05 1.28 6.97 -51.93 -0.36 0.92 16 35 H 0.27 7.99 5.53 -40.82 -0.23 7.77 16 36 H 0.06 1.33 7.75 -51.92 -0.40 0.93 16 37 H 0.04 0.79 7.91 -51.93 -0.41 0.37 16 LS Contribution 308.45 15.07 4.65 4.65 Total: -1.00 -30.44 308.45 -9.13 -39.57 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -5.41 Total: -1.07 kcal Atomic # 6 Polarization: -18.64 SS G_CDS: -0.32 Total: -18.96 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: -0.51 Total: -44.05 kcal Atomic # 14 Polarization: 25.17 SS G_CDS: -5.08 Total: 20.09 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -2.46 Total: -0.23 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.44 -9.13 -39.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259615541.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.536 kcal (2) G-P(sol) polarization free energy of solvation -30.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds