Wall clock time and date at job start Mon Mar 30 2020 06:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31785 * 122.75087 * 2 1 4 4 C 1.29025 * 117.12365 * 179.97438 * 3 2 1 5 5 S 1.70980 * 110.16834 * 359.73233 * 4 3 2 6 6 C 1.33636 * 122.74624 * 180.02562 * 2 1 3 7 7 C 1.50697 * 126.04225 * 359.97438 * 6 2 1 8 8 H 1.09002 * 109.46900 * 14.29844 * 7 6 2 9 9 C 1.53002 * 109.47435 * 254.30088 * 7 6 2 10 10 N 1.46903 * 109.47487 * 134.29844 * 7 6 2 11 11 C 1.47897 * 111.00144 * 183.88140 * 10 7 6 12 12 C 1.53990 * 107.06051 * 145.84644 * 11 10 7 13 13 C 1.54599 * 105.13709 * 358.77311 * 12 11 10 14 14 H 1.09004 * 110.72571 * 96.57821 * 13 12 11 15 15 C 1.50703 * 110.72593 * 219.68492 * 13 12 11 16 16 H 1.08002 * 119.99820 * 118.54871 * 15 13 12 17 17 C 1.37873 * 119.99996 * 298.54999 * 15 13 12 18 18 N 1.31516 * 120.00102 * 359.97438 * 17 15 13 19 19 Si 1.86793 * 120.00089 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47111 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47315 * 239.99785 * 19 17 15 22 22 H 1.48505 * 109.47349 * 119.99720 * 19 17 15 23 23 C 1.48526 * 110.99895 * 301.27847 * 10 7 6 24 24 H 1.08999 * 109.47408 * 269.99764 * 1 2 3 25 25 H 1.09006 * 109.47545 * 29.99672 * 1 2 3 26 26 H 1.08996 * 109.47687 * 149.99797 * 1 2 3 27 27 H 1.07998 * 124.91645 * 179.97438 * 4 3 2 28 28 H 1.09007 * 109.47012 * 59.99243 * 9 7 6 29 29 H 1.08994 * 109.47199 * 179.97438 * 9 7 6 30 30 H 1.08997 * 109.46676 * 300.00225 * 9 7 6 31 31 H 1.09001 * 109.91801 * 26.49136 * 11 10 7 32 32 H 1.09006 * 109.91630 * 265.19543 * 11 10 7 33 33 H 1.09002 * 110.31093 * 239.86191 * 12 11 10 34 34 H 1.08994 * 110.31126 * 117.68923 * 12 11 10 35 35 H 0.97001 * 119.99738 * 359.97438 * 18 17 15 36 36 H 1.09010 * 110.66811 * 81.84072 * 23 10 7 37 37 H 1.08997 * 110.67034 * 318.71321 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9818 0.0005 5 16 3.9332 -0.6732 0.0086 6 6 2.2298 -1.1240 -0.0005 7 6 1.6846 -2.5289 -0.0006 8 1 0.6246 -2.5072 -0.2540 9 6 1.8644 -3.1459 1.3879 10 7 2.4087 -3.3352 -0.9923 11 6 1.8388 -4.6967 -1.0866 12 6 1.9691 -5.1402 -2.5555 13 6 2.6146 -3.9392 -3.2841 14 1 3.6926 -4.0750 -3.3713 15 6 1.9922 -3.7423 -4.6424 16 1 1.4776 -2.8210 -4.8722 17 6 2.0798 -4.7383 -5.5918 18 7 2.7068 -5.8600 -5.3121 19 14 1.3078 -4.4945 -7.2752 20 1 0.6659 -3.1568 -7.3364 21 1 0.2843 -5.5452 -7.5073 22 1 2.3589 -4.5880 -8.3201 23 6 2.2819 -2.7482 -2.3507 24 1 -0.3634 0.0000 1.0276 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5138 27 1 4.2059 1.8025 0.0002 28 1 1.3271 -2.5475 2.1238 29 1 1.4696 -4.1618 1.3879 30 1 2.9243 -3.1675 1.6413 31 1 0.7886 -4.6807 -0.7952 32 1 2.3953 -5.3776 -0.4424 33 1 0.9858 -5.3532 -2.9750 34 1 2.6113 -6.0177 -2.6302 35 1 3.1080 -5.9864 -4.4381 36 1 2.9993 -1.9391 -2.4887 37 1 1.2651 -2.3958 -2.5241 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259615541.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:30 Heat of formation + Delta-G solvation = 18.684894 kcal Electronic energy + Delta-G solvation = -18483.634230 eV Core-core repulsion = 15772.379226 eV Total energy + Delta-G solvation = -2711.255003 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.08346 -39.89145 -36.29166 -34.15732 -32.19241 -30.24199 -29.78387 -28.14361 -26.04584 -25.77847 -23.69690 -21.92889 -21.24617 -19.89562 -19.16085 -18.61827 -17.32153 -16.60201 -16.29489 -15.81138 -15.67360 -15.10412 -14.62925 -14.47003 -14.14292 -14.07356 -13.81338 -13.51419 -13.39507 -13.24556 -12.82392 -12.65195 -12.54838 -12.31291 -12.18301 -12.03287 -11.95576 -11.74226 -11.35711 -10.59627 -10.59281 -10.49385 -10.13914 -9.65900 -9.44952 -8.59798 -6.33370 -0.22916 0.48000 0.90091 1.51516 1.59881 1.76248 1.79085 2.54880 2.97589 3.19795 3.32872 3.65396 3.89744 4.03738 4.16717 4.23252 4.29130 4.29661 4.39138 4.42299 4.66718 4.69725 4.74269 4.79614 4.83843 4.93385 4.94231 5.03166 5.09379 5.22564 5.31441 5.34127 5.60066 5.74590 6.07468 6.14865 6.21756 6.66155 6.74679 7.46755 8.79393 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.023667 B = 0.005625 C = 0.005235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.802408 B = 4976.416368 C = 5347.361486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.042 3.958 3 N -0.496 5.496 4 C 0.007 3.993 5 S 0.157 5.843 6 C -0.218 4.218 7 C 0.145 3.855 8 H 0.062 0.938 9 C -0.131 4.131 10 N -0.516 5.516 11 C 0.051 3.949 12 C -0.112 4.112 13 C 0.027 3.973 14 H -0.002 1.002 15 C -0.609 4.609 16 H 0.040 0.960 17 C -0.026 4.026 18 N -0.936 5.936 19 Si 1.115 2.885 20 H -0.276 1.276 21 H -0.278 1.278 22 H -0.280 1.280 23 C 0.073 3.927 24 H 0.092 0.908 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.229 0.771 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.088 0.912 33 H 0.039 0.961 34 H 0.042 0.958 35 H 0.264 0.736 36 H 0.056 0.944 37 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.596 9.208 14.401 17.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.090 4.090 3 N -0.210 5.210 4 C -0.290 4.290 5 S 0.412 5.588 6 C -0.340 4.340 7 C 0.035 3.965 8 H 0.079 0.921 9 C -0.189 4.189 10 N -0.241 5.241 11 C -0.077 4.077 12 C -0.151 4.151 13 C 0.008 3.992 14 H 0.016 0.984 15 C -0.648 4.648 16 H 0.058 0.942 17 C -0.225 4.225 18 N -0.573 5.573 19 Si 0.937 3.063 20 H -0.201 1.201 21 H -0.204 1.204 22 H -0.205 1.205 23 C -0.055 4.055 24 H 0.110 0.890 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.245 0.755 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.106 0.894 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -0.526 8.510 13.157 15.678 hybrid contribution -1.161 0.735 0.896 1.641 sum -1.687 9.245 14.052 16.905 Atomic orbital electron populations 1.20405 0.86216 1.03201 1.03747 1.20529 0.99190 0.86234 1.03060 1.66240 1.06081 1.31772 1.16923 1.28886 0.95319 1.01530 1.03243 1.84154 1.06427 1.01969 1.66274 1.25681 0.96235 0.99717 1.12371 1.20290 0.95156 0.86389 0.94710 0.92083 1.21814 1.02878 1.01180 0.93047 1.64882 1.51770 1.02364 1.05053 1.22788 0.98117 0.90350 0.96405 1.22406 0.99455 0.98733 0.94506 1.19653 0.94143 0.91966 0.93478 0.98417 1.22298 1.38918 1.03980 0.99568 0.94167 1.27107 0.95770 0.92395 1.07199 1.70835 1.34804 1.26592 1.25100 0.82950 0.75967 0.76029 0.71318 1.20128 1.20374 1.20544 1.22839 0.97787 0.97041 0.87805 0.88983 0.90705 0.91011 0.75479 0.90513 0.90993 0.92054 0.92982 0.89416 0.94225 0.93964 0.92458 0.92589 0.95673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.77 10.01 71.23 0.71 -1.05 16 2 C 0.04 1.19 6.74 41.52 0.28 1.47 16 3 N -0.50 -14.09 10.53 -191.56 -2.02 -16.11 16 4 C 0.01 0.17 12.23 130.65 1.60 1.77 16 5 S 0.16 4.09 22.91 -56.49 -1.29 2.80 16 6 C -0.22 -6.25 4.35 24.64 0.11 -6.15 16 7 C 0.15 4.13 2.08 44.17 0.09 4.23 16 8 H 0.06 1.75 6.24 -2.39 -0.01 1.73 16 9 C -0.13 -2.95 9.14 71.98 0.66 -2.29 16 10 N -0.52 -18.19 5.02 -862.25 -4.33 -22.52 16 11 C 0.05 1.79 5.50 86.45 0.48 2.27 16 12 C -0.11 -5.14 5.34 31.47 0.17 -4.97 16 13 C 0.03 1.36 2.62 -10.33 -0.03 1.34 16 14 H 0.00 -0.13 8.08 -2.39 -0.02 -0.15 16 15 C -0.61 -34.58 8.42 25.60 0.22 -34.37 16 16 H 0.04 2.29 7.78 -2.91 -0.02 2.27 16 17 C -0.03 -1.46 5.33 84.65 0.45 -1.01 16 18 N -0.94 -56.55 13.42 21.45 0.29 -56.26 16 19 Si 1.11 50.64 29.90 68.60 2.05 52.69 16 20 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 21 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 22 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 23 C 0.07 3.13 5.16 86.65 0.45 3.57 16 24 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 26 H 0.07 1.66 6.61 -2.39 -0.02 1.65 16 27 H 0.23 3.49 8.06 -2.91 -0.02 3.47 16 28 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 29 H 0.07 1.50 7.29 -2.39 -0.02 1.48 16 30 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.05 1.65 7.64 -2.39 -0.02 1.63 16 32 H 0.09 2.75 8.14 -2.38 -0.02 2.73 16 33 H 0.04 1.95 7.84 -2.39 -0.02 1.93 16 34 H 0.04 2.00 6.97 -2.39 -0.02 1.98 16 35 H 0.26 15.98 5.53 -92.71 -0.51 15.47 16 36 H 0.06 2.43 7.75 -2.38 -0.02 2.42 16 37 H 0.02 1.12 7.91 -2.39 -0.02 1.10 16 Total: -1.00 -66.03 308.45 1.18 -64.85 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: 1.31 Total: 9.76 kcal Atomic # 6 Polarization: -40.37 SS G_CDS: 5.18 Total: -35.19 kcal Atomic # 7 Polarization: -88.84 SS G_CDS: -6.06 Total: -94.90 kcal Atomic # 14 Polarization: 50.64 SS G_CDS: 2.05 Total: 52.69 kcal Atomic # 16 Polarization: 4.09 SS G_CDS: -1.29 Total: 2.80 kcal Total: -66.03 1.18 -64.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259615541.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.530 kcal (2) G-P(sol) polarization free energy of solvation -66.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds