Wall clock time and date at job start Mon Mar 30 2020 06:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 S 1.76198 * 126.03529 * 2 1 4 4 C 1.70982 * 90.28319 * 180.17846 * 3 2 1 5 5 N 1.29031 * 110.16464 * 359.83886 * 4 3 2 6 6 C 1.31781 * 117.12600 * 359.97438 * 5 4 3 7 7 C 1.50694 * 122.74907 * 179.97438 * 6 5 4 8 8 N 1.46900 * 109.47290 * 277.19520 * 7 6 5 9 9 C 1.46853 * 111.00234 * 293.91951 * 8 7 6 10 10 C 1.53036 * 109.52606 * 185.83787 * 9 8 7 11 11 C 1.53119 * 109.27863 * 300.82120 * 10 9 8 12 12 C 1.53126 * 109.16239 * 57.65269 * 11 10 9 13 13 C 1.46847 * 110.99938 * 58.12724 * 8 7 6 14 14 H 1.08994 * 109.46476 * 294.17733 * 13 8 7 15 15 C 1.50700 * 109.45998 * 54.14824 * 13 8 7 16 16 H 1.07994 * 120.00217 * 5.43780 * 15 13 8 17 17 C 1.37880 * 120.00172 * 185.44131 * 15 13 8 18 18 N 1.31522 * 119.99624 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 120.00223 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47080 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46665 * 120.00005 * 19 17 15 22 22 H 1.48495 * 109.47134 * 239.99837 * 19 17 15 23 23 H 1.08999 * 109.46888 * 274.84898 * 1 2 3 24 24 H 1.08995 * 109.47448 * 34.85189 * 1 2 3 25 25 H 1.09008 * 109.47132 * 154.85162 * 1 2 3 26 26 H 1.07995 * 124.91648 * 179.84447 * 4 3 2 27 27 H 1.09005 * 109.47168 * 157.19531 * 7 6 5 28 28 H 1.09002 * 109.47247 * 37.19420 * 7 6 5 29 29 H 1.09005 * 109.45644 * 65.81814 * 9 8 7 30 30 H 1.08998 * 109.45961 * 305.85450 * 9 8 7 31 31 H 1.08999 * 109.50032 * 180.88118 * 10 9 8 32 32 H 1.08994 * 109.53359 * 60.78105 * 10 9 8 33 33 H 1.08998 * 109.52354 * 177.55977 * 11 10 9 34 34 H 1.09006 * 109.52371 * 297.75608 * 11 10 9 35 35 H 1.08998 * 109.49837 * 62.28489 * 12 11 10 36 36 H 1.09000 * 109.50686 * 182.40683 * 12 11 10 37 37 H 0.97000 * 119.99932 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5435 1.4248 0.0000 4 6 3.9311 0.4258 -0.0053 5 7 3.5844 -0.8170 -0.0033 6 6 2.2933 -1.0806 0.0027 7 6 1.7481 -2.4855 0.0051 8 7 1.7262 -3.0046 -1.3689 9 6 0.7689 -2.2606 -2.1975 10 6 0.6658 -2.9182 -3.5755 11 6 2.0464 -2.9234 -4.2377 12 6 3.0355 -3.6624 -3.3321 13 6 3.0698 -2.9832 -1.9611 14 1 3.3998 -1.9507 -2.0755 15 6 4.0274 -3.7193 -1.0599 16 1 3.6584 -4.2338 -0.1850 17 6 5.3747 -3.7360 -1.3523 18 7 5.8241 -3.1099 -2.4181 19 14 6.5618 -4.6479 -0.2349 20 1 5.8103 -5.2651 0.8873 21 1 7.2543 -5.7092 -1.0092 22 1 7.5645 -3.6950 0.3050 23 1 -0.3633 0.0869 1.0240 24 1 -0.3634 0.8433 -0.5872 25 1 -0.3634 -0.9303 -0.4368 26 1 4.9502 0.7833 -0.0096 27 1 0.7353 -2.4815 0.4082 28 1 2.3827 -3.1205 0.6233 29 1 1.1097 -1.2314 -2.3107 30 1 -0.2096 -2.2682 -1.7174 31 1 -0.0330 -2.3565 -4.1954 32 1 0.3115 -3.9430 -3.4647 33 1 1.9864 -3.4296 -5.2012 34 1 2.3838 -1.8973 -4.3846 35 1 2.7187 -4.6989 -3.2168 36 1 4.0297 -3.6324 -3.7780 37 1 6.7719 -3.1219 -2.6241 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259636178.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:05 Heat of formation + Delta-G solvation = 27.979914 kcal Electronic energy + Delta-G solvation = -19319.505073 eV Core-core repulsion = 16608.653132 eV Total energy + Delta-G solvation = -2710.851941 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.22335 -39.08810 -34.93033 -34.64371 -33.05802 -31.19979 -29.08656 -27.12049 -26.20495 -24.92242 -23.60636 -22.79145 -20.57940 -19.44647 -18.88408 -18.08049 -17.01418 -16.43838 -16.28391 -15.52014 -15.41273 -14.97815 -14.74924 -14.25051 -14.07988 -13.90514 -13.85752 -13.58861 -13.48183 -13.13162 -12.86162 -12.54111 -12.29801 -12.16212 -12.00708 -11.85726 -11.76733 -11.40889 -10.89825 -10.65844 -10.32065 -10.23205 -9.96975 -9.53350 -8.86344 -7.97283 -5.99902 -0.09481 0.59878 0.88542 1.38562 1.40819 1.50646 2.07356 2.49979 3.35647 3.46007 3.59100 4.10593 4.14829 4.18023 4.25813 4.33354 4.39500 4.64046 4.73892 4.76305 4.80384 4.89982 4.98717 5.01624 5.05567 5.15261 5.25143 5.26186 5.36679 5.46202 5.52035 5.71227 5.82776 5.94148 6.37118 6.46297 6.86216 7.09435 7.15617 7.64670 9.11070 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.016313 B = 0.009665 C = 0.007163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.051693 B = 2896.244491 C = 3908.103886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.216 4.216 3 S 0.121 5.879 4 C -0.009 4.009 5 N -0.459 5.459 6 C 0.019 3.981 7 C 0.137 3.863 8 N -0.531 5.531 9 C 0.055 3.945 10 C -0.106 4.106 11 C -0.117 4.117 12 C -0.102 4.102 13 C 0.235 3.765 14 H -0.020 1.020 15 C -0.477 4.477 16 H 0.044 0.956 17 C 0.022 3.978 18 N -0.921 5.921 19 Si 0.939 3.061 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.290 1.290 23 H 0.093 0.907 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.198 0.802 27 H 0.103 0.897 28 H 0.065 0.935 29 H 0.010 0.990 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.032 0.968 35 H 0.033 0.967 36 H 0.047 0.953 37 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.332 8.415 2.895 15.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.338 4.338 3 S 0.373 5.627 4 C -0.307 4.307 5 N -0.172 5.172 6 C -0.114 4.114 7 C 0.006 3.994 8 N -0.253 5.253 9 C -0.072 4.072 10 C -0.144 4.144 11 C -0.154 4.154 12 C -0.141 4.141 13 C 0.128 3.872 14 H -0.002 1.002 15 C -0.516 4.516 16 H 0.063 0.937 17 C -0.175 4.175 18 N -0.563 5.563 19 Si 0.767 3.233 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.217 1.217 23 H 0.112 0.888 24 H 0.103 0.897 25 H 0.103 0.897 26 H 0.214 0.786 27 H 0.121 0.879 28 H 0.083 0.917 29 H 0.028 0.972 30 H 0.111 0.889 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.065 0.935 37 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -12.012 8.605 2.818 15.043 hybrid contribution 1.798 -0.448 0.341 1.884 sum -10.215 8.156 3.159 13.448 Atomic orbital electron populations 1.20493 0.84517 1.04354 1.04113 1.26236 1.02865 0.93941 1.10739 1.83258 0.99033 1.11264 1.69097 1.28620 1.04769 0.91197 1.06160 1.66303 1.18728 1.19479 1.12669 1.21299 0.87249 0.99251 1.03574 1.20788 0.99820 0.86684 0.92088 1.62353 1.09723 1.51711 1.01563 1.22206 0.96367 0.94185 0.94478 1.21546 0.96065 1.01603 0.95156 1.21593 0.96396 0.98856 0.98585 1.21495 0.97962 0.97783 0.96874 1.18865 0.83752 0.93386 0.91198 1.00250 1.21136 0.91669 1.30292 1.08457 0.93738 1.25355 0.99412 0.96541 0.96212 1.70054 1.13602 1.45142 1.27489 0.85800 0.79547 0.78338 0.79597 1.19665 1.21146 1.21667 0.88843 0.89691 0.89670 0.78560 0.87938 0.91700 0.97185 0.88918 0.89727 0.91306 0.91939 0.94946 0.94791 0.93460 0.93925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.56 9.62 71.24 0.69 -0.88 16 2 C -0.22 -6.50 5.75 24.64 0.14 -6.36 16 3 S 0.12 3.37 23.22 -56.49 -1.31 2.05 16 4 C -0.01 -0.33 12.23 130.65 1.60 1.27 16 5 N -0.46 -20.37 8.73 -191.55 -1.67 -22.04 16 6 C 0.02 0.75 4.56 41.52 0.19 0.94 16 7 C 0.14 5.32 5.13 85.55 0.44 5.76 16 8 N -0.53 -22.22 4.69 -880.03 -4.12 -26.35 16 9 C 0.06 1.87 4.07 86.32 0.35 2.22 16 10 C -0.11 -3.40 6.09 30.65 0.19 -3.21 16 11 C -0.12 -4.58 6.00 30.68 0.18 -4.40 16 12 C -0.10 -5.06 5.19 30.65 0.16 -4.90 16 13 C 0.23 11.98 1.11 44.19 0.05 12.03 16 14 H -0.02 -1.17 6.54 -2.39 -0.02 -1.18 16 15 C -0.48 -26.86 7.25 25.60 0.19 -26.67 16 16 H 0.04 2.56 6.49 -2.91 -0.02 2.54 16 17 C 0.02 1.28 5.33 84.65 0.45 1.73 16 18 N -0.92 -55.36 11.73 21.45 0.25 -55.11 16 19 Si 0.94 46.67 29.54 68.60 2.03 48.70 16 20 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 21 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 22 H -0.29 -14.40 7.11 99.48 0.71 -13.70 16 23 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.08 1.73 4.55 -2.38 -0.01 1.72 16 26 H 0.20 6.34 8.06 -2.91 -0.02 6.31 16 27 H 0.10 3.13 6.83 -2.38 -0.02 3.11 16 28 H 0.06 2.91 6.30 -2.39 -0.02 2.90 16 29 H 0.01 0.37 6.80 -2.38 -0.02 0.35 16 30 H 0.09 2.47 6.55 -2.39 -0.02 2.45 16 31 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 35 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.05 2.65 6.53 -2.39 -0.02 2.64 16 37 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -68.40 295.53 0.86 -67.55 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: 1.07 Total: 7.67 kcal Atomic # 6 Polarization: -27.09 SS G_CDS: 4.62 Total: -22.47 kcal Atomic # 7 Polarization: -97.95 SS G_CDS: -5.55 Total: -103.50 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Atomic # 16 Polarization: 3.37 SS G_CDS: -1.31 Total: 2.05 kcal Total: -68.40 0.86 -67.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259636178.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.529 kcal (2) G-P(sol) polarization free energy of solvation -68.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds