Wall clock time and date at job start Mon Mar 30 2020 06:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31782 * 122.75168 * 2 1 4 4 C 1.29029 * 117.12342 * 179.97438 * 3 2 1 5 5 S 1.70973 * 110.16776 * 0.02562 * 4 3 2 6 6 C 1.33647 * 122.74908 * 179.97438 * 2 1 3 7 7 C 1.50696 * 126.03635 * 0.03615 * 6 2 1 8 8 H 1.09007 * 109.47187 * 356.39861 * 7 6 2 9 9 C 1.52998 * 109.47341 * 116.39781 * 7 6 2 10 10 N 1.46904 * 109.47318 * 236.39926 * 7 6 2 11 11 C 1.47899 * 110.99468 * 300.95787 * 10 7 6 12 12 C 1.53990 * 107.05753 * 214.15126 * 11 10 7 13 13 C 1.54597 * 105.14119 * 1.23042 * 12 11 10 14 14 C 1.48534 * 111.00155 * 183.56511 * 10 7 6 15 15 H 1.09002 * 110.66747 * 41.28146 * 14 10 7 16 16 C 1.50703 * 110.66628 * 278.15212 * 14 10 7 17 17 H 1.08001 * 120.00006 * 0.02562 * 16 14 10 18 18 C 1.37876 * 119.99793 * 179.97438 * 16 14 10 19 19 N 1.31515 * 120.00107 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 119.99858 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47019 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47438 * 120.00202 * 20 18 16 23 23 H 1.48505 * 109.46990 * 240.00239 * 20 18 16 24 24 H 1.09001 * 109.46990 * 269.99856 * 1 2 3 25 25 H 1.08993 * 109.46974 * 29.99958 * 1 2 3 26 26 H 1.09005 * 109.47404 * 150.00131 * 1 2 3 27 27 H 1.08002 * 124.91177 * 180.02562 * 4 3 2 28 28 H 1.09002 * 109.46969 * 305.85502 * 9 7 6 29 29 H 1.09001 * 109.47156 * 65.85267 * 9 7 6 30 30 H 1.08999 * 109.47498 * 185.85800 * 9 7 6 31 31 H 1.08992 * 109.92296 * 333.50954 * 11 10 7 32 32 H 1.09008 * 109.91613 * 94.60642 * 11 10 7 33 33 H 1.09003 * 110.30468 * 120.14464 * 12 11 10 34 34 H 1.08997 * 110.31410 * 242.21084 * 12 11 10 35 35 H 1.08999 * 110.72466 * 140.31265 * 13 12 11 36 36 H 1.08994 * 110.72263 * 263.41836 * 13 12 11 37 37 H 0.97000 * 119.99815 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1083 0.0000 4 6 3.5040 0.9818 0.0005 5 16 3.9332 -0.6732 0.0004 6 6 2.2300 -1.1240 0.0005 7 6 1.6847 -2.5289 0.0004 8 1 0.5970 -2.4964 0.0643 9 6 2.0986 -3.2366 -1.2914 10 7 2.2214 -3.2626 1.1543 11 6 3.6991 -3.3074 1.1132 12 6 4.1267 -4.6625 1.7066 13 6 2.8054 -5.3866 2.0529 14 6 1.7728 -4.6786 1.1403 15 1 1.8110 -5.0842 0.1292 16 6 0.3842 -4.8023 1.7125 17 1 -0.1368 -3.9226 2.0605 18 6 -0.2216 -6.0384 1.7906 19 7 0.4123 -7.1094 1.3654 20 14 -1.9431 -6.1917 2.4992 21 1 -2.4337 -4.8493 2.9025 22 1 -2.8517 -6.7637 1.4733 23 1 -1.9123 -7.0840 3.6859 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8899 -0.5138 26 1 -0.3634 -0.8900 -0.5138 27 1 4.2060 1.8025 0.0010 28 1 1.7902 -2.6379 -2.1485 29 1 3.1814 -3.3616 -1.3063 30 1 1.6192 -4.2143 -1.3398 31 1 4.0445 -3.2278 0.0825 32 1 4.1120 -2.4918 1.7069 33 1 4.6911 -5.2362 0.9715 34 1 4.7234 -4.5103 2.6060 35 1 2.8717 -6.4471 1.8101 36 1 2.5539 -5.2481 3.1044 37 1 -0.0138 -7.9791 1.4207 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259805022.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:14 Heat of formation + Delta-G solvation = 50.345947 kcal Electronic energy + Delta-G solvation = -18801.733740 eV Core-core repulsion = 16091.851663 eV Total energy + Delta-G solvation = -2709.882077 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.73767 -38.40988 -33.82121 -32.48928 -30.99174 -28.55803 -27.86056 -26.90853 -24.73571 -24.33632 -22.32159 -20.29069 -19.37369 -18.13907 -17.51071 -16.36312 -15.63797 -15.34445 -14.69871 -14.51344 -14.03750 -13.34455 -13.23257 -13.13814 -12.95265 -12.29577 -12.21145 -12.12870 -11.84474 -11.20608 -11.13334 -11.08039 -10.97253 -10.70332 -10.60910 -10.41364 -10.27798 -9.79585 -9.58433 -9.32597 -9.07276 -8.83298 -8.45689 -8.40980 -7.32788 -6.06090 -4.06757 0.99276 1.65105 2.05024 3.04517 3.28576 3.37169 3.41954 4.39381 4.44903 4.97979 5.11956 5.26506 5.33799 5.40751 5.54989 5.64871 5.68848 5.78328 5.88939 6.00807 6.01569 6.04964 6.12588 6.32217 6.45405 6.48156 6.52670 6.57865 6.65617 7.05739 7.08558 7.36199 7.50045 7.78112 7.96115 8.00715 8.13181 8.45776 8.99324 9.57546 11.03797 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.023463 B = 0.006813 C = 0.005708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.107181 B = 4108.589742 C = 4904.479133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.049 3.951 3 N -0.468 5.468 4 C -0.013 4.013 5 S 0.123 5.877 6 C -0.178 4.178 7 C 0.152 3.848 8 H 0.109 0.891 9 C -0.186 4.186 10 N -0.504 5.504 11 C 0.022 3.978 12 C -0.133 4.133 13 C -0.101 4.101 14 C 0.201 3.799 15 H 0.026 0.974 16 C -0.498 4.498 17 H 0.063 0.937 18 C 0.061 3.939 19 N -0.894 5.894 20 Si 0.894 3.106 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.285 1.285 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.191 0.809 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.037 0.963 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.056 0.944 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.313 9.860 -4.089 12.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.083 4.083 3 N -0.182 5.182 4 C -0.311 4.311 5 S 0.377 5.623 6 C -0.299 4.299 7 C 0.040 3.960 8 H 0.126 0.874 9 C -0.245 4.245 10 N -0.228 5.228 11 C -0.107 4.107 12 C -0.172 4.172 13 C -0.140 4.140 14 C 0.096 3.904 15 H 0.043 0.957 16 C -0.536 4.536 17 H 0.082 0.918 18 C -0.141 4.141 19 N -0.533 5.533 20 Si 0.722 3.278 21 H -0.197 1.197 22 H -0.212 1.212 23 H -0.211 1.211 24 H 0.094 0.906 25 H 0.087 0.913 26 H 0.095 0.905 27 H 0.207 0.793 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.851 10.001 -3.644 12.658 hybrid contribution -1.271 -0.430 -0.315 1.378 sum 5.580 9.570 -3.959 11.764 Atomic orbital electron populations 1.20336 0.87199 1.02809 1.03126 1.20157 0.98190 0.86139 1.03783 1.66172 1.05157 1.31849 1.15057 1.28252 0.95416 1.01143 1.06246 1.84093 1.08393 1.01861 1.67944 1.25961 0.94195 1.00829 1.08908 1.20180 1.00432 0.85282 0.90111 0.87352 1.22542 1.01655 1.02424 0.97838 1.65151 1.04186 1.17154 1.36295 1.22981 0.91155 0.97925 0.98609 1.22449 0.99590 0.95641 0.99483 1.22434 0.91750 0.99419 1.00409 1.20458 0.94329 0.80375 0.95248 0.95687 1.21016 0.98925 0.93327 1.40363 0.91832 1.24926 0.97841 0.95808 0.95510 1.69960 1.37553 0.98546 1.47237 0.86503 0.84403 0.78175 0.78740 1.19655 1.21157 1.21095 0.90586 0.91264 0.90488 0.79256 0.92840 0.92639 0.90145 0.94500 0.91585 0.92965 0.92675 0.91130 0.92544 0.93053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.08 9.88 36.01 0.36 -0.72 16 2 C 0.05 0.80 6.74 -84.22 -0.57 0.23 16 3 N -0.47 -7.49 10.53 -11.89 -0.13 -7.62 16 4 C -0.01 -0.18 12.23 51.59 0.63 0.46 16 5 S 0.12 1.73 19.31 -107.50 -2.08 -0.35 16 6 C -0.18 -2.97 5.28 -35.92 -0.19 -3.16 16 7 C 0.15 2.80 2.70 -68.87 -0.19 2.61 16 8 H 0.11 2.12 6.34 -51.92 -0.33 1.79 16 9 C -0.19 -3.18 8.42 37.16 0.31 -2.87 16 10 N -0.50 -10.47 5.00 -217.46 -1.09 -11.56 16 11 C 0.02 0.41 4.58 -2.76 -0.01 0.39 16 12 C -0.13 -2.48 6.93 -25.38 -0.18 -2.66 16 13 C -0.10 -2.30 5.94 -24.87 -0.15 -2.45 16 14 C 0.20 4.79 1.97 -66.94 -0.13 4.66 16 15 H 0.03 0.65 5.65 -51.93 -0.29 0.35 16 16 C -0.50 -13.15 8.59 -34.44 -0.30 -13.44 16 17 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 18 C 0.06 1.62 5.36 -17.82 -0.10 1.53 16 19 N -0.89 -24.73 12.40 55.43 0.69 -24.04 16 20 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 21 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 24 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.08 1.05 6.81 -51.93 -0.35 0.70 16 27 H 0.19 1.82 8.06 -52.49 -0.42 1.40 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.92 5.86 -51.93 -0.30 0.61 16 30 H 0.08 1.53 6.32 -51.93 -0.33 1.20 16 31 H 0.04 0.63 4.52 -51.93 -0.23 0.40 16 32 H 0.07 1.15 6.91 -51.92 -0.36 0.79 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 1.72 7.65 -51.93 -0.40 1.32 16 36 H 0.06 1.35 8.05 -51.93 -0.42 0.93 16 37 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 299.70 15.07 4.52 4.52 Total: -1.00 -28.46 299.70 -8.71 -37.16 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -5.10 Total: 1.44 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: -0.50 Total: -15.42 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: -0.53 Total: -43.22 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -2.08 Total: -0.35 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.46 -8.71 -37.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259805022.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.510 kcal (2) G-P(sol) polarization free energy of solvation -28.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds