Wall clock time and date at job start Mon Mar 30 2020 06:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31782 * 122.75168 * 2 1 4 4 C 1.29029 * 117.12342 * 179.97438 * 3 2 1 5 5 S 1.70973 * 110.16776 * 0.02562 * 4 3 2 6 6 C 1.33647 * 122.74908 * 179.97438 * 2 1 3 7 7 C 1.50696 * 126.03635 * 0.03615 * 6 2 1 8 8 H 1.09007 * 109.47187 * 356.39861 * 7 6 2 9 9 C 1.52998 * 109.47341 * 116.39781 * 7 6 2 10 10 N 1.46904 * 109.47318 * 236.39926 * 7 6 2 11 11 C 1.47899 * 110.99468 * 300.95787 * 10 7 6 12 12 C 1.53990 * 107.05753 * 214.15126 * 11 10 7 13 13 C 1.54597 * 105.14119 * 1.23042 * 12 11 10 14 14 C 1.48534 * 111.00155 * 183.56511 * 10 7 6 15 15 H 1.09002 * 110.66747 * 41.28146 * 14 10 7 16 16 C 1.50703 * 110.66628 * 278.15212 * 14 10 7 17 17 H 1.08001 * 120.00006 * 0.02562 * 16 14 10 18 18 C 1.37876 * 119.99793 * 179.97438 * 16 14 10 19 19 N 1.31515 * 120.00107 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 119.99858 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47019 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47438 * 120.00202 * 20 18 16 23 23 H 1.48505 * 109.46990 * 240.00239 * 20 18 16 24 24 H 1.09001 * 109.46990 * 269.99856 * 1 2 3 25 25 H 1.08993 * 109.46974 * 29.99958 * 1 2 3 26 26 H 1.09005 * 109.47404 * 150.00131 * 1 2 3 27 27 H 1.08002 * 124.91177 * 180.02562 * 4 3 2 28 28 H 1.09002 * 109.46969 * 305.85502 * 9 7 6 29 29 H 1.09001 * 109.47156 * 65.85267 * 9 7 6 30 30 H 1.08999 * 109.47498 * 185.85800 * 9 7 6 31 31 H 1.08992 * 109.92296 * 333.50954 * 11 10 7 32 32 H 1.09008 * 109.91613 * 94.60642 * 11 10 7 33 33 H 1.09003 * 110.30468 * 120.14464 * 12 11 10 34 34 H 1.08997 * 110.31410 * 242.21084 * 12 11 10 35 35 H 1.08999 * 110.72466 * 140.31265 * 13 12 11 36 36 H 1.08994 * 110.72263 * 263.41836 * 13 12 11 37 37 H 0.97000 * 119.99815 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1083 0.0000 4 6 3.5040 0.9818 0.0005 5 16 3.9332 -0.6732 0.0004 6 6 2.2300 -1.1240 0.0005 7 6 1.6847 -2.5289 0.0004 8 1 0.5970 -2.4964 0.0643 9 6 2.0986 -3.2366 -1.2914 10 7 2.2214 -3.2626 1.1543 11 6 3.6991 -3.3074 1.1132 12 6 4.1267 -4.6625 1.7066 13 6 2.8054 -5.3866 2.0529 14 6 1.7728 -4.6786 1.1403 15 1 1.8110 -5.0842 0.1292 16 6 0.3842 -4.8023 1.7125 17 1 -0.1368 -3.9226 2.0605 18 6 -0.2216 -6.0384 1.7906 19 7 0.4123 -7.1094 1.3654 20 14 -1.9431 -6.1917 2.4992 21 1 -2.4337 -4.8493 2.9025 22 1 -2.8517 -6.7637 1.4733 23 1 -1.9123 -7.0840 3.6859 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8899 -0.5138 26 1 -0.3634 -0.8900 -0.5138 27 1 4.2060 1.8025 0.0010 28 1 1.7902 -2.6379 -2.1485 29 1 3.1814 -3.3616 -1.3063 30 1 1.6192 -4.2143 -1.3398 31 1 4.0445 -3.2278 0.0825 32 1 4.1120 -2.4918 1.7069 33 1 4.6911 -5.2362 0.9715 34 1 4.7234 -4.5103 2.6060 35 1 2.8717 -6.4471 1.8101 36 1 2.5539 -5.2481 3.1044 37 1 -0.0138 -7.9791 1.4207 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259805022.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:14 Heat of formation + Delta-G solvation = 32.489854 kcal Electronic energy + Delta-G solvation = -18802.508038 eV Core-core repulsion = 16091.851663 eV Total energy + Delta-G solvation = -2710.656375 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.99092 -39.92871 -35.39691 -34.37087 -32.24100 -30.30190 -29.43623 -28.17089 -26.37871 -25.75643 -23.77598 -21.84448 -21.05611 -19.35145 -18.79108 -18.32706 -17.10453 -16.63995 -16.51812 -15.95934 -15.48065 -14.89374 -14.63723 -14.54457 -14.32376 -13.80639 -13.47476 -13.41303 -13.32792 -12.99269 -12.72354 -12.68665 -12.51601 -12.39083 -12.27459 -11.99418 -11.81430 -11.55442 -11.32609 -10.88229 -10.51556 -10.46075 -10.12849 -9.57097 -8.94950 -8.11309 -6.17740 -0.15946 0.51408 0.90624 1.40901 1.44095 1.55020 1.86588 2.44165 3.19950 3.37029 3.46079 3.75951 4.02703 4.13750 4.15634 4.27224 4.35392 4.45325 4.45917 4.62889 4.73492 4.78577 4.84667 4.90410 4.95879 5.01926 5.07540 5.15654 5.30088 5.37391 5.42296 5.56122 5.67074 5.75810 6.17175 6.42403 6.57681 6.82025 6.93296 7.49704 8.97657 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.023463 B = 0.006813 C = 0.005708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.107181 B = 4108.589742 C = 4904.479133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.045 3.955 3 N -0.495 5.495 4 C 0.004 3.996 5 S 0.155 5.845 6 C -0.212 4.212 7 C 0.155 3.845 8 H 0.087 0.913 9 C -0.175 4.175 10 N -0.518 5.518 11 C 0.026 3.974 12 C -0.125 4.125 13 C -0.099 4.099 14 C 0.204 3.796 15 H 0.004 0.996 16 C -0.509 4.509 17 H 0.051 0.949 18 C 0.017 3.983 19 N -0.920 5.920 20 Si 0.951 3.049 21 H -0.270 1.270 22 H -0.280 1.280 23 H -0.283 1.283 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.231 0.769 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.047 0.953 36 H 0.036 0.964 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.554 11.567 -4.269 14.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.087 4.087 3 N -0.209 5.209 4 C -0.293 4.293 5 S 0.410 5.590 6 C -0.333 4.333 7 C 0.044 3.956 8 H 0.105 0.895 9 C -0.234 4.234 10 N -0.242 5.242 11 C -0.103 4.103 12 C -0.163 4.163 13 C -0.138 4.138 14 C 0.097 3.903 15 H 0.022 0.978 16 C -0.548 4.548 17 H 0.069 0.931 18 C -0.182 4.182 19 N -0.560 5.560 20 Si 0.778 3.222 21 H -0.194 1.194 22 H -0.206 1.206 23 H -0.209 1.209 24 H 0.090 0.910 25 H 0.101 0.899 26 H 0.094 0.906 27 H 0.247 0.753 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.066 0.934 36 H 0.055 0.945 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.099 11.715 -3.826 14.747 hybrid contribution -1.602 -0.868 -0.270 1.842 sum 6.497 10.847 -4.097 13.291 Atomic orbital electron populations 1.20364 0.86698 1.03442 1.03040 1.20421 0.98987 0.86356 1.02933 1.66252 1.06227 1.31589 1.16874 1.28982 0.95241 1.02015 1.03055 1.83873 1.05821 1.01977 1.67353 1.25731 0.96361 0.99684 1.11522 1.19985 0.99409 0.86462 0.89727 0.89511 1.22411 1.01761 1.01106 0.98102 1.65016 1.05910 1.15186 1.38083 1.23013 0.89528 0.98066 0.99680 1.22413 0.97583 0.95378 1.00948 1.22242 0.94256 0.98467 0.98867 1.20221 0.93595 0.82497 0.93951 0.97813 1.21254 1.00423 0.92936 1.40193 0.93104 1.25597 1.01115 0.95586 0.95942 1.70060 1.38868 0.98829 1.48257 0.85603 0.80526 0.78033 0.78065 1.19422 1.20629 1.20879 0.90981 0.89859 0.90613 0.75298 0.90987 0.91852 0.92804 0.93124 0.90234 0.91450 0.90516 0.93427 0.94498 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.14 9.88 71.24 0.70 -1.44 16 2 C 0.04 1.40 6.74 41.52 0.28 1.68 16 3 N -0.49 -14.61 10.53 -191.55 -2.02 -16.63 16 4 C 0.00 0.10 12.23 130.65 1.60 1.70 16 5 S 0.16 3.88 19.31 -56.49 -1.09 2.79 16 6 C -0.21 -6.79 5.28 24.64 0.13 -6.66 16 7 C 0.16 5.74 2.70 44.17 0.12 5.86 16 8 H 0.09 3.51 6.34 -2.38 -0.02 3.50 16 9 C -0.18 -5.96 8.42 71.98 0.61 -5.35 16 10 N -0.52 -21.50 5.00 -841.90 -4.21 -25.71 16 11 C 0.03 0.89 4.58 86.45 0.40 1.28 16 12 C -0.13 -4.47 6.93 31.47 0.22 -4.25 16 13 C -0.10 -4.59 5.94 31.80 0.19 -4.40 16 14 C 0.20 9.93 1.97 44.52 0.09 10.02 16 15 H 0.00 0.23 5.65 -2.39 -0.01 0.22 16 16 C -0.51 -27.69 8.59 25.60 0.22 -27.47 16 17 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 18 C 0.02 0.90 5.36 84.65 0.45 1.35 16 19 N -0.92 -52.16 12.40 21.45 0.27 -51.90 16 20 Si 0.95 43.56 29.54 68.60 2.03 45.58 16 21 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 22 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 23 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 24 H 0.07 2.05 8.14 -2.39 -0.02 2.04 16 25 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.08 2.10 6.81 -2.38 -0.02 2.09 16 27 H 0.23 3.26 8.06 -2.91 -0.02 3.24 16 28 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.06 2.02 5.86 -2.39 -0.01 2.00 16 30 H 0.05 2.11 6.32 -2.39 -0.02 2.09 16 31 H 0.05 1.62 4.52 -2.39 -0.01 1.61 16 32 H 0.08 2.55 6.91 -2.38 -0.02 2.54 16 33 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.05 2.38 7.65 -2.39 -0.02 2.36 16 36 H 0.04 1.80 8.05 -2.39 -0.02 1.78 16 37 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -61.66 299.70 1.04 -60.62 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 1.07 Total: 12.93 kcal Atomic # 6 Polarization: -32.69 SS G_CDS: 5.00 Total: -27.69 kcal Atomic # 7 Polarization: -88.28 SS G_CDS: -5.96 Total: -94.24 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: 3.88 SS G_CDS: -1.09 Total: 2.79 kcal Total: -61.66 1.04 -60.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259805022.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.108 kcal (2) G-P(sol) polarization free energy of solvation -61.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds