Wall clock time and date at job start Mon Mar 30 2020 06:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30088 * 121.55748 * 2 1 4 4 S 1.69597 * 107.14867 * 180.23316 * 3 2 1 5 5 C 1.72052 * 95.70745 * 359.75573 * 4 3 2 6 6 C 1.50695 * 127.25083 * 179.97438 * 5 4 3 7 7 C 1.35144 * 105.50017 * 359.97438 * 5 4 3 8 8 C 1.50697 * 122.61660 * 179.97438 * 7 5 4 9 9 N 1.46905 * 109.47390 * 93.40075 * 8 7 5 10 10 C 1.47899 * 110.99274 * 295.81727 * 9 8 7 11 11 C 1.53997 * 107.05647 * 145.84511 * 10 9 8 12 12 C 1.54596 * 105.13937 * 358.77106 * 11 10 9 13 13 H 1.09003 * 110.72062 * 96.57837 * 12 11 10 14 14 C 1.50694 * 110.72546 * 219.68582 * 12 11 10 15 15 H 1.07995 * 120.00057 * 118.54648 * 14 12 11 16 16 C 1.37879 * 120.00009 * 298.54809 * 14 12 11 17 17 N 1.31519 * 120.00180 * 359.97438 * 16 14 12 18 18 Si 1.86801 * 120.00173 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.46928 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47044 * 239.99813 * 18 16 14 21 21 H 1.48507 * 109.47154 * 119.99700 * 18 16 14 22 22 C 1.48532 * 110.99971 * 53.21133 * 9 8 7 23 23 H 1.09005 * 109.46936 * 270.21886 * 1 2 3 24 24 H 1.09004 * 109.47689 * 30.21726 * 1 2 3 25 25 H 1.09002 * 109.47355 * 150.22058 * 1 2 3 26 26 H 1.09000 * 109.47117 * 275.98391 * 6 5 4 27 27 H 1.08994 * 109.47365 * 35.98083 * 6 5 4 28 28 H 1.09006 * 109.47306 * 155.98463 * 6 5 4 29 29 H 1.08995 * 109.47155 * 333.39401 * 8 7 5 30 30 H 1.09006 * 109.46708 * 213.39284 * 8 7 5 31 31 H 1.08998 * 109.92210 * 26.49486 * 10 9 8 32 32 H 1.08998 * 109.92143 * 265.19382 * 10 9 8 33 33 H 1.08998 * 110.31132 * 239.85606 * 11 10 9 34 34 H 1.08998 * 110.31034 * 117.68635 * 11 10 9 35 35 H 0.97002 * 119.99412 * 0.02562 * 17 16 14 36 36 H 1.08999 * 110.66451 * 81.85098 * 22 9 8 37 37 H 1.09000 * 110.66840 * 318.71486 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1878 1.1085 0.0000 4 16 3.8304 0.6865 -0.0066 5 6 3.5701 -1.0142 -0.0020 6 6 4.6178 -2.0974 -0.0051 7 6 2.2282 -1.1742 0.0050 8 6 1.5719 -2.5308 0.0103 9 7 1.2916 -2.9338 1.3949 10 6 2.5451 -3.1036 2.1614 11 6 2.2526 -2.6651 3.6083 12 6 0.7750 -2.2106 3.6016 13 1 0.1225 -3.0152 3.9408 14 6 0.5910 -0.9820 4.4546 15 1 0.2383 -0.0635 4.0095 16 6 0.8731 -1.0306 5.8034 17 7 1.3023 -2.1494 6.3456 18 14 0.6445 0.4921 6.8610 19 1 0.1547 1.6117 6.0172 20 1 1.9431 0.8674 7.4756 21 1 -0.3457 0.2078 7.9306 22 6 0.5194 -1.8848 2.1086 23 1 -0.3633 0.0039 1.0277 24 1 -0.3634 0.8880 -0.5172 25 1 -0.3634 -0.8920 -0.5104 26 1 4.9424 -2.2860 -1.0285 27 1 5.4711 -1.7792 0.5937 28 1 4.1979 -3.0104 0.4170 29 1 2.2385 -3.2587 -0.4522 30 1 0.6385 -2.4849 -0.5508 31 1 3.3289 -2.4776 1.7349 32 1 2.8515 -4.1495 2.1452 33 1 2.9019 -1.8365 3.8911 34 1 2.3876 -3.5030 4.2922 35 1 1.4207 -2.9402 5.7965 36 1 -0.5423 -1.9622 1.8742 37 1 0.8979 -0.8930 1.8611 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259856349.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:40 Heat of formation + Delta-G solvation = 21.636915 kcal Electronic energy + Delta-G solvation = -19103.455080 eV Core-core repulsion = 16392.328086 eV Total energy + Delta-G solvation = -2711.126994 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.55658 -38.93058 -35.76807 -34.38531 -32.50559 -30.81998 -29.63521 -28.86438 -26.71572 -25.40646 -22.88617 -21.92071 -21.60826 -19.43052 -19.15776 -18.85217 -17.10168 -16.68466 -15.92701 -15.76719 -15.43369 -15.17669 -14.82907 -14.46041 -14.26925 -13.99062 -13.60436 -13.52921 -13.35482 -13.12818 -13.07636 -12.82589 -12.45258 -12.31083 -12.05259 -11.99728 -11.86158 -11.62078 -11.48391 -11.21312 -10.59481 -10.48973 -10.29290 -9.57884 -9.29510 -8.59233 -6.31978 -0.31475 0.49707 0.84467 1.35402 1.47902 1.56050 1.72292 2.52746 3.17271 3.23659 3.50009 3.82685 3.93183 4.06126 4.10394 4.25270 4.29990 4.36330 4.49175 4.54834 4.56298 4.64110 4.72617 4.77015 4.83925 4.90692 4.94965 5.06437 5.07058 5.18094 5.23713 5.37484 5.62422 5.66582 5.82389 6.13842 6.17863 6.24316 6.67765 7.47281 8.79744 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.019924 B = 0.007224 C = 0.006645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.992105 B = 3875.108213 C = 4212.448592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.130 3.870 3 N -0.503 5.503 4 S 0.225 5.775 5 C -0.150 4.150 6 C -0.090 4.090 7 C -0.216 4.216 8 C 0.112 3.888 9 N -0.507 5.507 10 C 0.028 3.972 11 C -0.110 4.110 12 C 0.023 3.977 13 H -0.003 1.003 14 C -0.603 4.603 15 H 0.038 0.962 16 C -0.027 4.027 17 N -0.937 5.937 18 Si 1.109 2.891 19 H -0.278 1.278 20 H -0.282 1.282 21 H -0.276 1.276 22 C 0.051 3.949 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.105 0.895 26 H 0.110 0.890 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.026 0.974 34 H 0.037 0.963 35 H 0.264 0.736 36 H 0.072 0.928 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.787 -0.471 -16.283 16.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.047 4.047 3 N -0.325 5.325 4 S 0.380 5.620 5 C -0.280 4.280 6 C -0.148 4.148 7 C -0.234 4.234 8 C -0.019 4.019 9 N -0.229 5.229 10 C -0.099 4.099 11 C -0.149 4.149 12 C 0.004 3.996 13 H 0.015 0.985 14 C -0.642 4.642 15 H 0.056 0.944 16 C -0.226 4.226 17 N -0.575 5.575 18 Si 0.933 3.067 19 H -0.203 1.203 20 H -0.208 1.208 21 H -0.202 1.202 22 C -0.076 4.076 23 H 0.096 0.904 24 H 0.102 0.898 25 H 0.124 0.876 26 H 0.129 0.871 27 H 0.104 0.896 28 H 0.110 0.890 29 H 0.124 0.876 30 H 0.120 0.880 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.045 0.955 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.527 1.671 -14.795 15.881 hybrid contribution -0.565 -1.218 -0.970 1.657 sum 4.962 0.453 -15.765 16.534 Atomic orbital electron populations 1.20970 0.85654 1.05017 1.03919 1.21686 0.99944 0.88143 0.94964 1.76648 1.00966 1.27285 1.27580 1.83745 1.10862 0.98123 1.69251 1.25708 0.98641 1.01701 1.01991 1.20713 0.94727 0.94269 1.05134 1.20718 0.92999 0.99404 1.10291 1.21216 1.00980 0.88709 0.90982 1.65092 1.15769 1.40286 1.01772 1.23175 0.92624 1.01408 0.92715 1.22353 0.98933 0.97966 0.95690 1.19689 0.92107 0.94731 0.93057 0.98477 1.22275 1.48484 0.97422 0.95970 0.94363 1.27016 0.93230 1.04404 0.97953 1.70830 1.44476 1.02212 1.39943 0.83017 0.77196 0.71953 0.74567 1.20314 1.20779 1.20160 1.23414 0.97526 0.93371 0.93287 0.90377 0.89809 0.87649 0.87150 0.89612 0.88975 0.87598 0.87965 0.91572 0.89663 0.95490 0.94450 0.92467 0.90947 0.93336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.55 8.67 71.23 0.62 -1.93 16 2 C 0.13 4.11 5.36 42.71 0.23 4.33 16 3 N -0.50 -17.41 12.05 -52.60 -0.63 -18.04 16 4 S 0.22 6.52 23.72 -56.49 -1.34 5.18 16 5 C -0.15 -3.90 5.64 24.97 0.14 -3.76 16 6 C -0.09 -1.64 9.08 71.23 0.65 -1.00 16 7 C -0.22 -6.14 3.97 -20.68 -0.08 -6.22 16 8 C 0.11 2.83 5.24 85.56 0.45 3.28 16 9 N -0.51 -16.95 5.54 -887.57 -4.91 -21.86 16 10 C 0.03 0.99 5.72 86.45 0.49 1.48 16 11 C -0.11 -5.16 5.34 31.47 0.17 -4.99 16 12 C 0.02 1.18 2.62 -10.34 -0.03 1.15 16 13 H 0.00 -0.16 8.08 -2.39 -0.02 -0.18 16 14 C -0.60 -34.39 8.42 25.60 0.22 -34.17 16 15 H 0.04 2.20 7.78 -2.91 -0.02 2.18 16 16 C -0.03 -1.56 5.33 84.65 0.45 -1.11 16 17 N -0.94 -57.28 13.42 21.45 0.29 -56.99 16 18 Si 1.11 51.91 29.90 68.60 2.05 53.96 16 19 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 20 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 21 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 22 C 0.05 2.07 4.03 86.65 0.35 2.42 16 23 H 0.08 2.44 5.95 -2.38 -0.01 2.43 16 24 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 25 H 0.11 2.25 6.41 -2.39 -0.02 2.24 16 26 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.09 1.69 5.14 -2.38 -0.01 1.68 16 29 H 0.11 2.15 7.18 -2.39 -0.02 2.13 16 30 H 0.10 2.24 6.49 -2.38 -0.02 2.22 16 31 H 0.07 2.10 3.33 -2.39 -0.01 2.09 16 32 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 33 H 0.03 1.38 7.84 -2.39 -0.02 1.36 16 34 H 0.04 1.80 6.97 -2.39 -0.02 1.79 16 35 H 0.26 16.15 5.53 -92.71 -0.51 15.63 16 36 H 0.07 2.77 7.83 -2.39 -0.02 2.76 16 37 H 0.05 2.03 3.69 -2.39 -0.01 2.02 16 Total: -1.00 -68.36 290.17 0.45 -67.92 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: 1.34 Total: 10.35 kcal Atomic # 6 Polarization: -44.17 SS G_CDS: 3.65 Total: -40.52 kcal Atomic # 7 Polarization: -91.63 SS G_CDS: -5.26 Total: -96.89 kcal Atomic # 14 Polarization: 51.91 SS G_CDS: 2.05 Total: 53.96 kcal Atomic # 16 Polarization: 6.52 SS G_CDS: -1.34 Total: 5.18 kcal Total: -68.36 0.45 -67.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259856349.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.552 kcal (2) G-P(sol) polarization free energy of solvation -68.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds