Wall clock time and date at job start Mon Mar 30 2020 06:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30082 * 121.56187 * 2 1 4 4 S 1.69597 * 107.14981 * 180.02562 * 3 2 1 5 5 C 1.72053 * 95.70598 * 359.81744 * 4 3 2 6 6 C 1.50702 * 127.24745 * 180.19529 * 5 4 3 7 7 C 1.35137 * 105.49919 * 0.30389 * 5 4 3 8 8 C 1.50701 * 122.61441 * 179.97438 * 7 5 4 9 9 N 1.46905 * 109.46928 * 260.72568 * 8 7 5 10 10 C 1.47843 * 110.99771 * 55.48951 * 9 8 7 11 11 C 1.54909 * 104.79398 * 146.36208 * 10 9 8 12 12 C 1.55135 * 101.65431 * 322.92661 * 11 10 9 13 13 H 1.08998 * 110.85614 * 277.20172 * 12 11 10 14 14 C 1.50699 * 110.70575 * 154.03765 * 12 11 10 15 15 H 1.08004 * 119.99829 * 249.39604 * 14 12 11 16 16 C 1.37870 * 119.99971 * 69.40066 * 14 12 11 17 17 N 1.31517 * 120.00191 * 5.79482 * 16 14 12 18 18 Si 1.86802 * 119.99944 * 185.80096 * 16 14 12 19 19 H 1.48504 * 109.47404 * 84.98938 * 18 16 14 20 20 H 1.48501 * 109.47255 * 324.99215 * 18 16 14 21 21 H 1.48503 * 109.47235 * 204.98877 * 18 16 14 22 22 C 1.47448 * 110.99772 * 176.33150 * 9 8 7 23 23 H 1.08991 * 109.47543 * 269.98629 * 1 2 3 24 24 H 1.09006 * 109.46705 * 29.98358 * 1 2 3 25 25 H 1.08998 * 109.47434 * 149.97640 * 1 2 3 26 26 H 1.09003 * 109.46990 * 270.90538 * 6 5 4 27 27 H 1.08995 * 109.47636 * 30.91102 * 6 5 4 28 28 H 1.09003 * 109.46947 * 150.91156 * 6 5 4 29 29 H 1.09002 * 109.46789 * 140.72724 * 8 7 5 30 30 H 1.08996 * 109.47298 * 20.72909 * 8 7 5 31 31 H 1.09004 * 110.36773 * 265.18773 * 10 9 8 32 32 H 1.08999 * 110.37630 * 27.41900 * 10 9 8 33 33 H 1.08997 * 110.98676 * 204.83403 * 11 10 9 34 34 H 1.08996 * 110.99116 * 81.02085 * 11 10 9 35 35 H 0.97004 * 119.99762 * 180.02562 * 17 16 14 36 36 H 1.08992 * 109.88951 * 117.33761 * 22 9 8 37 37 H 1.08998 * 110.02135 * 356.22195 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1879 1.1084 0.0000 4 16 3.8305 0.6863 -0.0007 5 6 3.5701 -1.0144 0.0044 6 6 4.6178 -2.0976 0.0104 7 6 2.2282 -1.1743 -0.0004 8 6 1.5718 -2.5308 0.0013 9 7 1.1631 -2.8787 -1.3662 10 6 2.3112 -2.8126 -2.2953 11 6 2.0444 -3.9304 -3.3340 12 6 1.4197 -5.0395 -2.4474 13 1 2.1954 -5.6219 -1.9503 14 6 0.5255 -5.9352 -3.2655 15 1 -0.5440 -5.9117 -3.1170 16 6 1.0728 -6.7846 -4.2035 17 7 2.3792 -6.8974 -4.3057 18 14 -0.0411 -7.7752 -5.3292 19 1 -0.4176 -6.9495 -6.5048 20 1 -1.2665 -8.1711 -4.5897 21 1 0.6751 -8.9924 -5.7882 22 6 0.5949 -4.2384 -1.4181 23 1 -0.3634 -0.0002 1.0276 24 1 -0.3633 0.8902 -0.5136 25 1 -0.3634 -0.8897 -0.5142 26 1 4.8843 -2.3509 -1.0158 27 1 5.5030 -1.7441 0.5390 28 1 4.2238 -2.9814 0.5121 29 1 0.6948 -2.5092 0.6482 30 1 2.2772 -3.2753 0.3702 31 1 2.3470 -1.8396 -2.7855 32 1 3.2426 -3.0024 -1.7618 33 1 2.9747 -4.2714 -3.7882 34 1 1.3397 -3.5959 -4.0953 35 1 2.7642 -7.4948 -4.9659 36 1 -0.4476 -4.1928 -1.7329 37 1 0.6659 -4.7101 -0.4380 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259856351.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:43 Heat of formation + Delta-G solvation = 31.686322 kcal Electronic energy + Delta-G solvation = -18379.100577 eV Core-core repulsion = 15668.409358 eV Total energy + Delta-G solvation = -2710.691219 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.79311 -37.63836 -33.83020 -32.77417 -30.99842 -29.20301 -28.27418 -27.84501 -25.14285 -23.78124 -21.57574 -20.26032 -19.53791 -18.43549 -17.74733 -16.55099 -15.53799 -15.07242 -14.60148 -14.17904 -14.13797 -13.74492 -13.37539 -13.14829 -12.80749 -12.43311 -12.29499 -12.13328 -12.03565 -11.89371 -11.30440 -11.23360 -11.08042 -10.77540 -10.69990 -10.62539 -10.34669 -10.21781 -9.68532 -9.37487 -9.15298 -8.91796 -8.42066 -8.39243 -7.62557 -6.05905 -4.07229 0.78943 1.56757 1.95608 2.49727 3.29820 3.36319 3.38858 4.41486 4.54631 4.72223 4.97143 5.06644 5.27601 5.29884 5.41656 5.46915 5.52173 5.63265 5.73391 5.78456 5.82277 6.00959 6.06568 6.16323 6.21780 6.28079 6.33342 6.54032 6.82675 6.83436 7.09105 7.13500 7.52269 7.54532 7.73200 7.86652 7.94922 8.38738 8.94788 9.56612 11.04574 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.035531 B = 0.004705 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.852782 B = 5949.355947 C = 6357.031602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.145 3.855 3 N -0.471 5.471 4 S 0.218 5.782 5 C -0.160 4.160 6 C -0.083 4.083 7 C -0.157 4.157 8 C 0.116 3.884 9 N -0.525 5.525 10 C 0.039 3.961 11 C -0.109 4.109 12 C 0.035 3.965 13 H 0.034 0.966 14 C -0.511 4.511 15 H 0.057 0.943 16 C 0.064 3.936 17 N -0.891 5.891 18 Si 0.890 3.110 19 H -0.280 1.280 20 H -0.274 1.274 21 H -0.288 1.288 22 C 0.046 3.954 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.099 0.901 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.042 0.958 31 H 0.054 0.946 32 H 0.038 0.962 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.260 0.740 36 H 0.071 0.929 37 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.374 10.808 9.523 14.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.033 4.033 3 N -0.292 5.292 4 S 0.373 5.627 5 C -0.290 4.290 6 C -0.141 4.141 7 C -0.173 4.173 8 C -0.015 4.015 9 N -0.250 5.250 10 C -0.089 4.089 11 C -0.147 4.147 12 C 0.016 3.984 13 H 0.052 0.948 14 C -0.549 4.549 15 H 0.076 0.924 16 C -0.138 4.138 17 N -0.529 5.529 18 Si 0.718 3.282 19 H -0.206 1.206 20 H -0.199 1.199 21 H -0.214 1.214 22 C -0.080 4.080 23 H 0.095 0.905 24 H 0.092 0.908 25 H 0.118 0.882 26 H 0.106 0.894 27 H 0.092 0.908 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 3.034 13.156 9.286 16.386 hybrid contribution -0.670 -2.705 -0.472 2.826 sum 2.364 10.451 8.813 13.874 Atomic orbital electron populations 1.20647 0.86430 1.04854 1.03030 1.21308 0.99085 0.87702 0.95194 1.76727 0.99654 1.26180 1.26663 1.83836 1.11847 0.97087 1.69908 1.25214 0.98264 1.01416 1.04102 1.20426 0.94989 0.94968 1.03747 1.19845 0.91829 0.97654 1.08011 1.20814 0.98100 0.89879 0.92658 1.63733 1.29036 1.27894 1.04303 1.23141 0.91548 0.99401 0.94766 1.22674 1.00780 0.94277 0.96996 1.19805 0.94457 0.92292 0.91828 0.94772 1.21060 0.93060 1.21087 1.19713 0.92440 1.24967 0.94918 0.96482 0.97415 1.69959 1.09952 1.38052 1.34956 0.86649 0.80797 0.79496 0.81298 1.20571 1.19927 1.21376 1.23024 1.00138 0.86081 0.98797 0.90491 0.90768 0.88249 0.89433 0.90827 0.89946 0.90189 0.93985 0.92711 0.94379 0.91751 0.92498 0.93030 0.91072 0.94685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.06 9.69 36.01 0.35 -0.71 16 2 C 0.15 2.09 6.72 -83.49 -0.56 1.53 16 3 N -0.47 -7.16 12.05 32.02 0.39 -6.78 16 4 S 0.22 2.87 23.72 -107.50 -2.55 0.32 16 5 C -0.16 -2.12 6.08 -35.41 -0.22 -2.34 16 6 C -0.08 -0.93 8.96 36.01 0.32 -0.61 16 7 C -0.16 -2.25 4.49 -105.88 -0.48 -2.72 16 8 C 0.12 1.72 3.90 -4.97 -0.02 1.70 16 9 N -0.53 -9.30 4.98 -232.68 -1.16 -10.45 16 10 C 0.04 0.73 5.60 -2.30 -0.01 0.71 16 11 C -0.11 -2.45 6.17 -24.59 -0.15 -2.60 16 12 C 0.04 0.85 2.70 -89.95 -0.24 0.61 16 13 H 0.03 0.90 8.13 -51.93 -0.42 0.47 16 14 C -0.51 -13.62 8.44 -34.44 -0.29 -13.91 16 15 H 0.06 1.51 7.52 -52.48 -0.39 1.12 16 16 C 0.06 1.74 5.35 -17.82 -0.10 1.64 16 17 N -0.89 -25.17 13.03 55.43 0.72 -24.44 16 18 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 C 0.05 0.93 6.48 -2.83 -0.02 0.91 16 23 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.10 1.26 6.98 -51.93 -0.36 0.89 16 26 H 0.09 1.02 7.01 -51.93 -0.36 0.66 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.08 0.92 6.78 -51.93 -0.35 0.57 16 29 H 0.08 1.07 7.56 -51.93 -0.39 0.68 16 30 H 0.04 0.62 6.57 -51.93 -0.34 0.28 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.04 0.67 4.86 -51.93 -0.25 0.42 16 33 H 0.06 1.55 8.11 -51.93 -0.42 1.13 16 34 H 0.06 1.35 8.04 -51.93 -0.42 0.93 16 35 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.07 1.46 7.62 -51.93 -0.40 1.06 16 37 H 0.03 0.65 7.58 -51.93 -0.39 0.26 16 LS Contribution 306.84 15.07 4.62 4.62 Total: -1.00 -28.53 306.84 -9.74 -38.28 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -5.34 Total: -1.70 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: -1.41 Total: -15.78 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: -0.05 Total: -41.68 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 2.87 SS G_CDS: -2.55 Total: 0.32 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.53 -9.74 -38.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259856351.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.963 kcal (2) G-P(sol) polarization free energy of solvation -28.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds