Wall clock time and date at job start Mon Mar 30 2020 06:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30082 * 121.56187 * 2 1 4 4 S 1.69597 * 107.14981 * 180.02562 * 3 2 1 5 5 C 1.72053 * 95.70598 * 359.81744 * 4 3 2 6 6 C 1.50702 * 127.24745 * 180.19529 * 5 4 3 7 7 C 1.35137 * 105.49919 * 0.30389 * 5 4 3 8 8 C 1.50701 * 122.61441 * 179.97438 * 7 5 4 9 9 N 1.46905 * 109.46928 * 260.72568 * 8 7 5 10 10 C 1.47843 * 110.99771 * 55.48951 * 9 8 7 11 11 C 1.54909 * 104.79398 * 146.36208 * 10 9 8 12 12 C 1.55135 * 101.65431 * 322.92661 * 11 10 9 13 13 H 1.08998 * 110.85614 * 277.20172 * 12 11 10 14 14 C 1.50699 * 110.70575 * 154.03765 * 12 11 10 15 15 H 1.08004 * 119.99829 * 249.39604 * 14 12 11 16 16 C 1.37870 * 119.99971 * 69.40066 * 14 12 11 17 17 N 1.31517 * 120.00191 * 5.79482 * 16 14 12 18 18 Si 1.86802 * 119.99944 * 185.80096 * 16 14 12 19 19 H 1.48504 * 109.47404 * 84.98938 * 18 16 14 20 20 H 1.48501 * 109.47255 * 324.99215 * 18 16 14 21 21 H 1.48503 * 109.47235 * 204.98877 * 18 16 14 22 22 C 1.47448 * 110.99772 * 176.33150 * 9 8 7 23 23 H 1.08991 * 109.47543 * 269.98629 * 1 2 3 24 24 H 1.09006 * 109.46705 * 29.98358 * 1 2 3 25 25 H 1.08998 * 109.47434 * 149.97640 * 1 2 3 26 26 H 1.09003 * 109.46990 * 270.90538 * 6 5 4 27 27 H 1.08995 * 109.47636 * 30.91102 * 6 5 4 28 28 H 1.09003 * 109.46947 * 150.91156 * 6 5 4 29 29 H 1.09002 * 109.46789 * 140.72724 * 8 7 5 30 30 H 1.08996 * 109.47298 * 20.72909 * 8 7 5 31 31 H 1.09004 * 110.36773 * 265.18773 * 10 9 8 32 32 H 1.08999 * 110.37630 * 27.41900 * 10 9 8 33 33 H 1.08997 * 110.98676 * 204.83403 * 11 10 9 34 34 H 1.08996 * 110.99116 * 81.02085 * 11 10 9 35 35 H 0.97004 * 119.99762 * 180.02562 * 17 16 14 36 36 H 1.08992 * 109.88951 * 117.33761 * 22 9 8 37 37 H 1.08998 * 110.02135 * 356.22195 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1879 1.1084 0.0000 4 16 3.8305 0.6863 -0.0007 5 6 3.5701 -1.0144 0.0044 6 6 4.6178 -2.0976 0.0104 7 6 2.2282 -1.1743 -0.0004 8 6 1.5718 -2.5308 0.0013 9 7 1.1631 -2.8787 -1.3662 10 6 2.3112 -2.8126 -2.2953 11 6 2.0444 -3.9304 -3.3340 12 6 1.4197 -5.0395 -2.4474 13 1 2.1954 -5.6219 -1.9503 14 6 0.5255 -5.9352 -3.2655 15 1 -0.5440 -5.9117 -3.1170 16 6 1.0728 -6.7846 -4.2035 17 7 2.3792 -6.8974 -4.3057 18 14 -0.0411 -7.7752 -5.3292 19 1 -0.4176 -6.9495 -6.5048 20 1 -1.2665 -8.1711 -4.5897 21 1 0.6751 -8.9924 -5.7882 22 6 0.5949 -4.2384 -1.4181 23 1 -0.3634 -0.0002 1.0276 24 1 -0.3633 0.8902 -0.5136 25 1 -0.3634 -0.8897 -0.5142 26 1 4.8843 -2.3509 -1.0158 27 1 5.5030 -1.7441 0.5390 28 1 4.2238 -2.9814 0.5121 29 1 0.6948 -2.5092 0.6482 30 1 2.2772 -3.2753 0.3702 31 1 2.3470 -1.8396 -2.7855 32 1 3.2426 -3.0024 -1.7618 33 1 2.9747 -4.2714 -3.7882 34 1 1.3397 -3.5959 -4.0953 35 1 2.7642 -7.4948 -4.9659 36 1 -0.4476 -4.1928 -1.7329 37 1 0.6659 -4.7101 -0.4380 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259856351.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:42 Heat of formation + Delta-G solvation = 14.804645 kcal Electronic energy + Delta-G solvation = -18379.832622 eV Core-core repulsion = 15668.409358 eV Total energy + Delta-G solvation = -2711.423264 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.96147 -39.12301 -35.32969 -34.26945 -32.50156 -30.35687 -29.96973 -28.98224 -26.71038 -25.40565 -22.65280 -21.81730 -21.29783 -19.51751 -18.86393 -18.53720 -16.93207 -16.47374 -16.34166 -15.47935 -15.38159 -15.00838 -14.53483 -14.40612 -14.08383 -13.88781 -13.75703 -13.36707 -13.05300 -13.03767 -12.97783 -12.83223 -12.59975 -12.52942 -12.35650 -11.99689 -11.83942 -11.52503 -11.40016 -11.14596 -10.90043 -10.47235 -10.23635 -9.47178 -9.06770 -8.13370 -6.20591 -0.26529 0.53200 0.91236 1.41460 1.42775 1.44452 1.52929 2.44608 3.19093 3.30020 3.56574 3.85599 4.04241 4.18391 4.27429 4.35907 4.40056 4.53166 4.58680 4.59316 4.66837 4.74292 4.77169 4.84865 4.90152 5.03185 5.06230 5.14471 5.29525 5.32683 5.35466 5.60757 5.71579 5.78705 5.89451 6.16855 6.30907 6.38404 6.88870 7.46487 8.96673 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.035531 B = 0.004705 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.852782 B = 5949.355947 C = 6357.031602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.140 3.860 3 N -0.501 5.501 4 S 0.237 5.763 5 C -0.156 4.156 6 C -0.085 4.085 7 C -0.175 4.175 8 C 0.119 3.881 9 N -0.523 5.523 10 C 0.055 3.945 11 C -0.103 4.103 12 C 0.028 3.972 13 H 0.005 0.995 14 C -0.526 4.526 15 H 0.057 0.943 16 C 0.015 3.985 17 N -0.922 5.922 18 Si 0.950 3.050 19 H -0.277 1.277 20 H -0.266 1.266 21 H -0.286 1.286 22 C 0.060 3.940 23 H 0.098 0.902 24 H 0.075 0.925 25 H 0.093 0.907 26 H 0.083 0.917 27 H 0.098 0.902 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.046 0.954 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.041 0.959 34 H 0.039 0.961 35 H 0.260 0.740 36 H 0.066 0.934 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.995 11.318 10.407 15.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.038 4.038 3 N -0.323 5.323 4 S 0.393 5.607 5 C -0.286 4.286 6 C -0.144 4.144 7 C -0.191 4.191 8 C -0.011 4.011 9 N -0.247 5.247 10 C -0.073 4.073 11 C -0.141 4.141 12 C 0.009 3.991 13 H 0.024 0.976 14 C -0.565 4.565 15 H 0.075 0.925 16 C -0.184 4.184 17 N -0.561 5.561 18 Si 0.776 3.224 19 H -0.203 1.203 20 H -0.190 1.190 21 H -0.212 1.212 22 C -0.068 4.068 23 H 0.116 0.884 24 H 0.094 0.906 25 H 0.111 0.889 26 H 0.102 0.898 27 H 0.116 0.884 28 H 0.102 0.898 29 H 0.116 0.884 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.643 13.677 10.181 17.254 hybrid contribution -0.492 -2.834 -0.714 2.964 sum 2.152 10.843 9.467 14.555 Atomic orbital electron populations 1.20690 0.85121 1.04590 1.04313 1.21610 1.00124 0.87494 0.94523 1.76673 1.00773 1.26926 1.27899 1.83736 1.10841 0.96720 1.69395 1.25547 0.98482 1.02076 1.02524 1.20527 0.95451 0.94518 1.03857 1.19840 0.92249 0.97326 1.09695 1.20842 0.99122 0.90236 0.90869 1.63694 1.28741 1.26212 1.06096 1.22949 0.92554 0.97804 0.93966 1.22468 0.98997 0.95375 0.97305 1.19763 0.94048 0.92530 0.92769 0.97641 1.21448 0.93450 1.21505 1.20076 0.92507 1.25710 0.96137 0.97706 0.98817 1.70075 1.11456 1.38899 1.35663 0.85686 0.79251 0.78028 0.79410 1.20306 1.19033 1.21199 1.22774 0.99117 0.86684 0.98189 0.88405 0.90558 0.88867 0.89811 0.88359 0.89757 0.88355 0.93627 0.92378 0.93076 0.94069 0.94230 0.93123 0.91577 0.93184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.88 9.69 71.24 0.69 -1.19 16 2 C 0.14 3.77 6.72 42.72 0.29 4.06 16 3 N -0.50 -14.44 12.05 -52.60 -0.63 -15.07 16 4 S 0.24 5.82 23.72 -56.49 -1.34 4.48 16 5 C -0.16 -3.81 6.08 24.97 0.15 -3.66 16 6 C -0.09 -1.71 8.96 71.24 0.64 -1.08 16 7 C -0.17 -4.64 4.49 -20.68 -0.09 -4.73 16 8 C 0.12 3.26 3.90 85.56 0.33 3.59 16 9 N -0.52 -17.71 4.98 -890.07 -4.43 -22.15 16 10 C 0.05 2.00 5.60 86.77 0.49 2.48 16 11 C -0.10 -4.69 6.17 31.98 0.20 -4.50 16 12 C 0.03 1.37 2.70 -10.36 -0.03 1.34 16 13 H 0.01 0.29 8.13 -2.39 -0.02 0.27 16 14 C -0.53 -28.27 8.44 25.60 0.22 -28.06 16 15 H 0.06 2.99 7.52 -2.91 -0.02 2.96 16 16 C 0.02 0.83 5.35 84.65 0.45 1.28 16 17 N -0.92 -52.93 13.03 21.45 0.28 -52.65 16 18 Si 0.95 43.05 29.54 68.60 2.03 45.08 16 19 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 20 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 21 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 22 C 0.06 2.32 6.48 86.65 0.56 2.88 16 23 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 25 H 0.09 2.17 6.98 -2.39 -0.02 2.15 16 26 H 0.08 1.80 7.01 -2.39 -0.02 1.78 16 27 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.08 1.69 6.78 -2.39 -0.02 1.68 16 29 H 0.10 2.34 7.56 -2.39 -0.02 2.33 16 30 H 0.05 1.24 6.57 -2.39 -0.02 1.22 16 31 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.05 1.73 4.86 -2.39 -0.01 1.72 16 33 H 0.04 2.03 8.11 -2.39 -0.02 2.01 16 34 H 0.04 1.90 8.04 -2.39 -0.02 1.88 16 35 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 36 H 0.07 2.64 7.62 -2.39 -0.02 2.62 16 37 H 0.05 1.78 7.58 -2.39 -0.02 1.76 16 Total: -1.00 -60.64 306.84 0.85 -59.79 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: 1.06 Total: 8.10 kcal Atomic # 6 Polarization: -31.47 SS G_CDS: 3.89 Total: -27.58 kcal Atomic # 7 Polarization: -85.08 SS G_CDS: -4.79 Total: -89.87 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: 5.82 SS G_CDS: -1.34 Total: 4.48 kcal Total: -60.64 0.85 -59.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259856351.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.593 kcal (2) G-P(sol) polarization free energy of solvation -60.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds