Wall clock time and date at job start Mon Mar 30 2020 06:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29028 * 124.91717 * 2 1 4 4 C 1.31776 * 117.12599 * 179.97438 * 3 2 1 5 5 C 1.50702 * 122.74743 * 179.97438 * 4 3 2 6 6 C 1.33635 * 114.50082 * 0.02562 * 4 3 2 7 7 C 1.50708 * 126.03687 * 179.97438 * 6 4 3 8 8 H 1.08995 * 109.47030 * 345.01421 * 7 6 4 9 9 C 1.50695 * 109.46959 * 105.02030 * 7 6 4 10 10 H 1.07994 * 120.00333 * 64.48573 * 9 7 6 11 11 C 1.37885 * 119.99505 * 244.48543 * 9 7 6 12 12 N 1.31513 * 119.99849 * 173.34831 * 11 9 7 13 13 Si 1.86796 * 120.00034 * 353.34318 * 11 9 7 14 14 H 1.48489 * 109.47435 * 85.43210 * 13 11 9 15 15 H 1.48506 * 109.47126 * 205.43591 * 13 11 9 16 16 H 1.48507 * 109.46960 * 325.42906 * 13 11 9 17 17 N 1.46902 * 109.46913 * 225.01543 * 7 6 4 18 18 C 1.48541 * 110.99891 * 60.01641 * 17 7 6 19 19 C 1.54943 * 103.22542 * 159.71963 * 18 17 7 20 20 C 1.54592 * 102.91836 * 322.58312 * 19 18 17 21 21 C 1.47903 * 110.99978 * 177.40941 * 17 7 6 22 22 S 1.70982 * 124.91749 * 180.02562 * 2 1 3 23 23 H 1.09006 * 109.47173 * 90.02351 * 1 2 3 24 24 H 1.09001 * 109.46628 * 210.02023 * 1 2 3 25 25 H 1.08989 * 109.47319 * 330.02027 * 1 2 3 26 26 H 1.09004 * 109.46434 * 90.03023 * 5 4 3 27 27 H 1.09002 * 109.47035 * 210.02502 * 5 4 3 28 28 H 1.08999 * 109.47352 * 330.03088 * 5 4 3 29 29 H 0.96994 * 120.00267 * 180.02562 * 12 11 9 30 30 H 1.08994 * 110.66745 * 278.15456 * 18 17 7 31 31 H 1.08998 * 110.66761 * 41.28427 * 18 17 7 32 32 H 1.09000 * 110.71767 * 204.23193 * 19 18 17 33 33 H 1.08997 * 110.72142 * 80.94556 * 19 18 17 34 34 H 1.09000 * 110.31065 * 263.03828 * 20 19 18 35 35 H 1.09006 * 110.30498 * 140.87395 * 20 19 18 36 36 H 1.09003 * 109.91310 * 333.51139 * 21 17 7 37 37 H 1.09000 * 109.91174 * 94.80493 * 21 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8794 0.0005 5 6 4.5307 2.0246 0.0000 6 6 3.9354 -0.4006 0.0004 7 6 5.3575 -0.8993 0.0004 8 1 6.0289 -0.0828 -0.2653 9 6 5.7097 -1.4131 1.3726 10 1 5.1961 -2.2736 1.7753 11 6 6.6876 -0.7845 2.1141 12 7 6.9048 -1.1485 3.3590 13 14 7.7039 0.5841 1.3502 14 1 6.9817 1.8740 1.4899 15 1 9.0145 0.6730 2.0429 16 1 7.9236 0.2930 -0.0894 17 7 5.4955 -1.9853 -0.9793 18 6 5.1561 -1.5148 -2.3467 19 6 5.8409 -2.5610 -3.2617 20 6 7.1594 -2.8641 -2.5136 21 6 6.8947 -2.4591 -1.0517 22 16 2.4857 -1.4020 -0.0006 23 1 -0.3634 -0.0004 -1.0277 24 1 -0.3632 -0.8898 0.5142 25 1 -0.3633 0.8901 0.5135 26 1 4.7669 2.3010 1.0276 27 1 5.4432 1.7221 -0.5137 28 1 4.0905 2.8791 -0.5140 29 1 7.5924 -0.7061 3.8807 30 1 4.0767 -1.5191 -2.4981 31 1 5.5665 -0.5208 -2.5245 32 1 6.0441 -2.1385 -4.2457 33 1 5.2294 -3.4594 -3.3452 34 1 7.9747 -2.2715 -2.9287 35 1 7.3936 -3.9269 -2.5753 36 1 7.5736 -1.6580 -0.7595 37 1 7.0292 -3.3206 -0.3975 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259886610.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:38 Heat of formation + Delta-G solvation = 42.273416 kcal Electronic energy + Delta-G solvation = -18857.085113 eV Core-core repulsion = 16146.852985 eV Total energy + Delta-G solvation = -2710.232128 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.33108 -38.09328 -34.01258 -32.36220 -31.17576 -28.82358 -28.36534 -27.64739 -25.67650 -22.45260 -21.94948 -20.52665 -19.84567 -18.08268 -17.56450 -16.66301 -15.42409 -15.22730 -14.57610 -14.47095 -14.02607 -13.26382 -13.10290 -12.91275 -12.78093 -12.66528 -12.33917 -12.19190 -11.94032 -11.68066 -11.56130 -11.17304 -10.87733 -10.82408 -10.63332 -10.57089 -10.30760 -10.15225 -10.04367 -9.64141 -8.93730 -8.77470 -8.33740 -7.74825 -7.47874 -6.30656 -4.30046 1.52407 2.14651 2.63624 3.10720 3.15712 3.21273 3.49039 4.18789 4.67250 4.75633 5.05101 5.19181 5.24367 5.40213 5.48211 5.67820 5.70331 5.81730 5.86390 5.94024 6.03005 6.04909 6.15732 6.17987 6.23426 6.27276 6.27481 6.41229 6.49450 6.59575 6.68431 6.82873 6.95595 7.25305 7.81760 7.84670 8.38031 8.47364 8.80889 9.29878 10.81135 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.015244 B = 0.010145 C = 0.007527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.288308 B = 2759.287631 C = 3719.218244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.011 4.011 3 N -0.466 5.466 4 C 0.012 3.988 5 C -0.069 4.069 6 C -0.135 4.135 7 C 0.237 3.763 8 H 0.034 0.966 9 C -0.492 4.492 10 H 0.085 0.915 11 C 0.082 3.918 12 N -0.879 5.879 13 Si 0.860 3.140 14 H -0.265 1.265 15 H -0.285 1.285 16 H -0.265 1.265 17 N -0.509 5.509 18 C 0.026 3.974 19 C -0.120 4.120 20 C -0.134 4.134 21 C 0.055 3.945 22 S 0.138 5.862 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.268 0.732 30 H 0.071 0.929 31 H 0.031 0.969 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.042 0.958 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.038 0.374 -10.182 11.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.289 4.289 3 N -0.182 5.182 4 C -0.118 4.118 5 C -0.128 4.128 6 C -0.258 4.258 7 C 0.129 3.871 8 H 0.052 0.948 9 C -0.531 4.531 10 H 0.103 0.897 11 C -0.124 4.124 12 N -0.515 5.515 13 Si 0.687 3.313 14 H -0.190 1.190 15 H -0.211 1.211 16 H -0.190 1.190 17 N -0.234 5.234 18 C -0.102 4.102 19 C -0.158 4.158 20 C -0.172 4.172 21 C -0.073 4.073 22 S 0.392 5.608 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.097 0.903 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.060 0.940 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.772 -0.560 -9.814 11.399 hybrid contribution 1.785 2.178 -0.306 2.832 sum -3.988 1.618 -10.120 10.997 Atomic orbital electron populations 1.20221 0.86333 1.03214 1.02692 1.26654 1.01079 0.92649 1.08510 1.65965 1.04512 1.32278 1.15400 1.19802 0.89859 0.94010 1.08117 1.20281 0.95553 0.94505 1.02459 1.26310 1.00621 0.94654 1.04189 1.18469 0.85464 0.89595 0.93587 0.94845 1.20754 1.20422 1.15132 0.96787 0.89685 1.25049 0.96566 0.96220 0.94529 1.69866 1.32389 1.41635 1.07616 0.87200 0.80640 0.83676 0.79747 1.18971 1.21061 1.19038 1.65072 1.21221 1.34247 1.02883 1.23241 1.00122 0.96030 0.90817 1.22434 0.96603 0.99310 0.97445 1.22467 0.97240 1.01097 0.96373 1.22550 0.89704 1.00491 0.94593 1.83790 0.97025 1.11428 1.68538 0.90751 0.90835 0.90333 0.91154 0.91961 0.91672 0.92135 0.91061 0.95033 0.92142 0.91128 0.92427 0.91575 0.93984 0.90273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.84 10.46 36.01 0.38 -0.46 16 2 C -0.01 -0.21 7.39 -13.45 -0.10 -0.31 16 3 N -0.47 -9.54 10.53 -8.06 -0.08 -9.63 16 4 C 0.01 0.26 6.74 -84.23 -0.57 -0.30 16 5 C -0.07 -1.34 9.62 36.01 0.35 -0.99 16 6 C -0.14 -2.98 4.40 -35.92 -0.16 -3.14 16 7 C 0.24 5.48 1.43 -70.01 -0.10 5.38 16 8 H 0.03 0.80 2.84 -51.93 -0.15 0.65 16 9 C -0.49 -13.18 8.32 -34.44 -0.29 -13.46 16 10 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 11 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 12 N -0.88 -25.57 13.96 55.43 0.77 -24.80 16 13 Si 0.86 20.26 25.48 -169.99 -4.33 15.92 16 14 H -0.26 -6.01 6.64 56.52 0.38 -5.63 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 16 H -0.26 -5.96 5.71 56.52 0.32 -5.64 16 17 N -0.51 -10.56 5.00 -225.27 -1.13 -11.69 16 18 C 0.03 0.47 5.78 -1.89 -0.01 0.45 16 19 C -0.12 -1.75 7.06 -24.87 -0.18 -1.93 16 20 C -0.13 -2.04 6.93 -25.38 -0.18 -2.22 16 21 C 0.05 1.07 5.92 -2.76 -0.02 1.05 16 22 S 0.14 2.64 22.91 -107.50 -2.46 0.18 16 23 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 24 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.08 0.97 8.14 -51.94 -0.42 0.55 16 26 H 0.07 1.42 7.78 -51.93 -0.40 1.01 16 27 H 0.06 1.20 5.99 -51.93 -0.31 0.88 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.07 1.25 7.82 -51.93 -0.41 0.84 16 31 H 0.03 0.57 8.00 -51.93 -0.42 0.16 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.04 0.89 5.99 -51.93 -0.31 0.58 16 37 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 LS Contribution 304.92 15.07 4.60 4.60 Total: -1.00 -29.49 304.92 -9.06 -38.55 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -5.46 Total: 0.67 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: -0.96 Total: -13.80 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: -0.44 Total: -46.12 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.33 Total: 15.92 kcal Atomic # 16 Polarization: 2.64 SS G_CDS: -2.46 Total: 0.18 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.49 -9.06 -38.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259886610.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.827 kcal (2) G-P(sol) polarization free energy of solvation -29.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds