Wall clock time and date at job start Mon Mar 30 2020 06:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29028 * 124.91717 * 2 1 4 4 C 1.31776 * 117.12599 * 179.97438 * 3 2 1 5 5 C 1.50702 * 122.74743 * 179.97438 * 4 3 2 6 6 C 1.33635 * 114.50082 * 0.02562 * 4 3 2 7 7 C 1.50708 * 126.03687 * 179.97438 * 6 4 3 8 8 H 1.08995 * 109.47030 * 345.01421 * 7 6 4 9 9 C 1.50695 * 109.46959 * 105.02030 * 7 6 4 10 10 H 1.07994 * 120.00333 * 64.48573 * 9 7 6 11 11 C 1.37885 * 119.99505 * 244.48543 * 9 7 6 12 12 N 1.31513 * 119.99849 * 173.34831 * 11 9 7 13 13 Si 1.86796 * 120.00034 * 353.34318 * 11 9 7 14 14 H 1.48489 * 109.47435 * 85.43210 * 13 11 9 15 15 H 1.48506 * 109.47126 * 205.43591 * 13 11 9 16 16 H 1.48507 * 109.46960 * 325.42906 * 13 11 9 17 17 N 1.46902 * 109.46913 * 225.01543 * 7 6 4 18 18 C 1.48541 * 110.99891 * 60.01641 * 17 7 6 19 19 C 1.54943 * 103.22542 * 159.71963 * 18 17 7 20 20 C 1.54592 * 102.91836 * 322.58312 * 19 18 17 21 21 C 1.47903 * 110.99978 * 177.40941 * 17 7 6 22 22 S 1.70982 * 124.91749 * 180.02562 * 2 1 3 23 23 H 1.09006 * 109.47173 * 90.02351 * 1 2 3 24 24 H 1.09001 * 109.46628 * 210.02023 * 1 2 3 25 25 H 1.08989 * 109.47319 * 330.02027 * 1 2 3 26 26 H 1.09004 * 109.46434 * 90.03023 * 5 4 3 27 27 H 1.09002 * 109.47035 * 210.02502 * 5 4 3 28 28 H 1.08999 * 109.47352 * 330.03088 * 5 4 3 29 29 H 0.96994 * 120.00267 * 180.02562 * 12 11 9 30 30 H 1.08994 * 110.66745 * 278.15456 * 18 17 7 31 31 H 1.08998 * 110.66761 * 41.28427 * 18 17 7 32 32 H 1.09000 * 110.71767 * 204.23193 * 19 18 17 33 33 H 1.08997 * 110.72142 * 80.94556 * 19 18 17 34 34 H 1.09000 * 110.31065 * 263.03828 * 20 19 18 35 35 H 1.09006 * 110.30498 * 140.87395 * 20 19 18 36 36 H 1.09003 * 109.91310 * 333.51139 * 21 17 7 37 37 H 1.09000 * 109.91174 * 94.80493 * 21 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8794 0.0005 5 6 4.5307 2.0246 0.0000 6 6 3.9354 -0.4006 0.0004 7 6 5.3575 -0.8993 0.0004 8 1 6.0289 -0.0828 -0.2653 9 6 5.7097 -1.4131 1.3726 10 1 5.1961 -2.2736 1.7753 11 6 6.6876 -0.7845 2.1141 12 7 6.9048 -1.1485 3.3590 13 14 7.7039 0.5841 1.3502 14 1 6.9817 1.8740 1.4899 15 1 9.0145 0.6730 2.0429 16 1 7.9236 0.2930 -0.0894 17 7 5.4955 -1.9853 -0.9793 18 6 5.1561 -1.5148 -2.3467 19 6 5.8409 -2.5610 -3.2617 20 6 7.1594 -2.8641 -2.5136 21 6 6.8947 -2.4591 -1.0517 22 16 2.4857 -1.4020 -0.0006 23 1 -0.3634 -0.0004 -1.0277 24 1 -0.3632 -0.8898 0.5142 25 1 -0.3633 0.8901 0.5135 26 1 4.7669 2.3010 1.0276 27 1 5.4432 1.7221 -0.5137 28 1 4.0905 2.8791 -0.5140 29 1 7.5924 -0.7061 3.8807 30 1 4.0767 -1.5191 -2.4981 31 1 5.5665 -0.5208 -2.5245 32 1 6.0441 -2.1385 -4.2457 33 1 5.2294 -3.4594 -3.3452 34 1 7.9747 -2.2715 -2.9287 35 1 7.3936 -3.9269 -2.5753 36 1 7.5736 -1.6580 -0.7595 37 1 7.0292 -3.3206 -0.3975 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259886610.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:37 Heat of formation + Delta-G solvation = 22.146828 kcal Electronic energy + Delta-G solvation = -18857.957867 eV Core-core repulsion = 16146.852985 eV Total energy + Delta-G solvation = -2711.104883 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.89797 -39.59456 -35.69761 -34.15614 -32.70373 -30.14874 -29.80732 -29.24510 -27.47053 -24.08617 -23.44499 -21.90078 -21.37284 -19.69849 -19.41654 -18.34519 -16.94928 -16.78915 -16.22513 -15.96048 -15.60875 -14.90878 -14.73159 -14.44481 -14.21107 -14.07578 -13.79774 -13.71252 -13.20655 -13.17174 -12.99524 -12.78249 -12.53078 -12.25097 -12.16102 -12.09676 -11.88740 -11.84381 -11.63713 -11.36432 -10.86634 -10.45495 -9.92194 -9.32872 -9.11761 -8.40670 -6.44440 -0.02760 0.61940 1.07366 1.22804 1.23655 1.31646 1.90751 2.20547 2.91667 3.24877 3.37907 3.84192 3.91619 4.12040 4.16295 4.30677 4.38423 4.42648 4.53367 4.61770 4.65151 4.69023 4.74375 4.78666 4.85574 4.96930 5.01702 5.04106 5.09369 5.14551 5.23551 5.33138 5.41099 5.47389 6.00149 6.19450 6.48741 6.62668 6.91471 7.20122 8.75447 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.015244 B = 0.010145 C = 0.007527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.288308 B = 2759.287631 C = 3719.218244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.011 3.989 3 N -0.489 5.489 4 C 0.010 3.990 5 C -0.070 4.070 6 C -0.178 4.178 7 C 0.250 3.750 8 H 0.028 0.972 9 C -0.490 4.490 10 H 0.037 0.963 11 C 0.030 3.970 12 N -0.931 5.931 13 Si 0.913 3.087 14 H -0.250 1.250 15 H -0.284 1.284 16 H -0.250 1.250 17 N -0.523 5.523 18 C 0.026 3.974 19 C -0.109 4.109 20 C -0.125 4.125 21 C 0.049 3.951 22 S 0.142 5.858 23 H 0.102 0.898 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.089 0.911 29 H 0.269 0.731 30 H 0.071 0.929 31 H 0.028 0.972 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.021 0.979 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.204 1.168 -12.895 14.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.267 4.267 3 N -0.205 5.205 4 C -0.120 4.120 5 C -0.129 4.129 6 C -0.300 4.300 7 C 0.140 3.860 8 H 0.045 0.955 9 C -0.529 4.529 10 H 0.055 0.945 11 C -0.170 4.170 12 N -0.570 5.570 13 Si 0.737 3.263 14 H -0.174 1.174 15 H -0.210 1.210 16 H -0.174 1.174 17 N -0.247 5.247 18 C -0.102 4.102 19 C -0.147 4.147 20 C -0.163 4.163 21 C -0.079 4.079 22 S 0.397 5.603 23 H 0.120 0.880 24 H 0.113 0.887 25 H 0.107 0.893 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.108 0.892 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.046 0.954 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.040 0.960 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.940 0.223 -12.553 14.345 hybrid contribution 1.935 1.854 0.519 2.729 sum -5.005 2.077 -12.034 13.198 Atomic orbital electron populations 1.20512 0.82418 1.04805 1.04948 1.27637 1.03136 0.91399 1.04548 1.66081 1.04137 1.32931 1.17400 1.20160 0.90781 0.94277 1.06785 1.20324 0.95502 0.94938 1.02123 1.26145 1.01014 0.95614 1.07211 1.18138 0.86280 0.89607 0.91947 0.95484 1.20776 1.19808 1.13650 0.98684 0.94456 1.25764 0.97727 0.98742 0.94734 1.70006 1.33817 1.43859 1.09333 0.86331 0.79004 0.81254 0.79666 1.17421 1.21046 1.17397 1.64885 1.21947 1.33568 1.04348 1.23296 1.00509 0.96874 0.89547 1.22438 0.95646 0.98731 0.97898 1.22435 0.98265 1.02552 0.93018 1.22588 0.88799 0.98987 0.97550 1.83684 0.96285 1.11834 1.68492 0.87985 0.88681 0.89251 0.92149 0.91929 0.89245 0.92172 0.91021 0.95412 0.89106 0.90235 0.90810 0.89693 0.96026 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.48 10.46 71.24 0.75 -0.74 16 2 C 0.01 0.37 7.39 88.52 0.65 1.02 16 3 N -0.49 -19.18 10.53 -179.40 -1.89 -21.07 16 4 C 0.01 0.43 6.74 41.52 0.28 0.71 16 5 C -0.07 -2.64 9.62 71.24 0.69 -1.95 16 6 C -0.18 -7.82 4.40 24.64 0.11 -7.71 16 7 C 0.25 11.68 1.43 43.42 0.06 11.74 16 8 H 0.03 1.31 2.84 -2.39 -0.01 1.30 16 9 C -0.49 -27.49 8.32 25.60 0.21 -27.28 16 10 H 0.04 2.38 8.06 -2.91 -0.02 2.36 16 11 C 0.03 1.73 5.47 84.66 0.46 2.19 16 12 N -0.93 -56.87 13.96 21.45 0.30 -56.57 16 13 Si 0.91 42.53 25.48 68.60 1.75 44.28 16 14 H -0.25 -10.95 6.64 99.48 0.66 -10.29 16 15 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 16 H -0.25 -10.87 5.71 99.48 0.57 -10.30 16 17 N -0.52 -21.70 5.00 -866.62 -4.33 -26.03 16 18 C 0.03 0.87 5.78 86.65 0.50 1.37 16 19 C -0.11 -2.84 7.06 31.80 0.22 -2.62 16 20 C -0.12 -3.50 6.93 31.47 0.22 -3.28 16 21 C 0.05 1.91 5.92 86.44 0.51 2.42 16 22 S 0.14 5.33 22.91 -56.49 -1.29 4.04 16 23 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 24 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.06 2.39 7.78 -2.39 -0.02 2.37 16 27 H 0.06 2.33 5.99 -2.39 -0.01 2.31 16 28 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 29 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 30 H 0.07 2.39 7.82 -2.39 -0.02 2.37 16 31 H 0.03 0.96 8.00 -2.39 -0.02 0.94 16 32 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 36 H 0.02 0.92 5.99 -2.39 -0.01 0.90 16 37 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -67.03 304.92 0.08 -66.95 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: 0.87 Total: 12.53 kcal Atomic # 6 Polarization: -28.78 SS G_CDS: 4.67 Total: -24.12 kcal Atomic # 7 Polarization: -97.76 SS G_CDS: -5.92 Total: -103.68 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 1.75 Total: 44.28 kcal Atomic # 16 Polarization: 5.33 SS G_CDS: -1.29 Total: 4.04 kcal Total: -67.03 0.08 -66.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259886610.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.100 kcal (2) G-P(sol) polarization free energy of solvation -67.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds