Wall clock time and date at job start Mon Mar 30 2020 06:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29025 * 124.91423 * 2 1 4 4 C 1.31788 * 117.12393 * 180.02562 * 3 2 1 5 5 C 1.50706 * 122.74711 * 179.73097 * 4 3 2 6 6 C 1.33629 * 114.50125 * 359.97438 * 4 3 2 7 7 C 1.50696 * 126.04061 * 179.97438 * 6 4 3 8 8 H 1.09002 * 109.47091 * 14.99846 * 7 6 4 9 9 C 1.50700 * 109.47220 * 255.00312 * 7 6 4 10 10 H 1.08002 * 119.99865 * 305.38410 * 9 7 6 11 11 C 1.37876 * 120.00661 * 125.38348 * 9 7 6 12 12 N 1.31525 * 119.99622 * 5.33719 * 11 9 7 13 13 Si 1.86800 * 120.00470 * 185.33626 * 11 9 7 14 14 H 1.48492 * 109.46851 * 60.00260 * 13 11 9 15 15 H 1.48498 * 109.47093 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.46837 * 299.99960 * 13 11 9 17 17 N 1.46895 * 109.47901 * 135.00028 * 7 6 4 18 18 C 1.48538 * 110.99994 * 75.30404 * 17 7 6 19 19 C 1.54935 * 103.22297 * 159.72760 * 18 17 7 20 20 C 1.54592 * 102.92583 * 322.58440 * 19 18 17 21 21 C 1.47897 * 111.00662 * 192.70649 * 17 7 6 22 22 S 1.70973 * 124.91959 * 180.02562 * 2 1 3 23 23 H 1.08999 * 109.47058 * 90.02826 * 1 2 3 24 24 H 1.09000 * 109.46514 * 210.02164 * 1 2 3 25 25 H 1.08999 * 109.47375 * 330.02111 * 1 2 3 26 26 H 1.09000 * 109.47007 * 90.01726 * 5 4 3 27 27 H 1.08993 * 109.46852 * 210.02227 * 5 4 3 28 28 H 1.09004 * 109.46907 * 330.02350 * 5 4 3 29 29 H 0.96998 * 119.99801 * 174.98360 * 12 11 9 30 30 H 1.08996 * 110.66826 * 278.15778 * 18 17 7 31 31 H 1.09001 * 110.66584 * 41.29143 * 18 17 7 32 32 H 1.09011 * 110.72218 * 204.23123 * 19 18 17 33 33 H 1.08997 * 110.88219 * 81.02173 * 19 18 17 34 34 H 1.08993 * 110.31308 * 263.04902 * 20 19 18 35 35 H 1.09000 * 110.30775 * 140.87357 * 20 19 18 36 36 H 1.09005 * 109.91093 * 333.50846 * 21 17 7 37 37 H 1.09002 * 109.91701 * 94.79880 * 21 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 -0.0005 5 6 4.5307 2.0247 -0.0065 6 6 3.9354 -0.4005 -0.0004 7 6 5.3575 -0.8993 -0.0015 8 1 6.0291 -0.0827 0.2636 9 6 5.7086 -1.4129 -1.3741 10 1 5.0933 -2.1671 -1.8421 11 6 6.8153 -0.9202 -2.0324 12 7 7.6234 -0.0805 -1.4226 13 14 7.1671 -1.4450 -3.7903 14 1 6.0289 -1.0548 -4.6605 15 1 8.4061 -0.7796 -4.2670 16 1 7.3463 -2.9183 -3.8405 17 7 5.4964 -1.9852 0.9780 18 6 4.8916 -3.2424 0.4682 19 6 5.5697 -4.3368 1.3302 20 6 7.0155 -3.8109 1.4821 21 6 6.9208 -2.2951 1.2274 22 16 2.4857 -1.4019 -0.0006 23 1 -0.3633 -0.0005 -1.0277 24 1 -0.3632 -0.8898 0.5142 25 1 -0.3634 0.8901 0.5135 26 1 4.7681 2.3051 1.0197 27 1 5.4425 1.7202 -0.5203 28 1 4.0897 2.8772 -0.5233 29 1 8.4401 0.2096 -1.8582 30 1 3.8131 -3.2421 0.6258 31 1 5.1273 -3.3826 -0.5867 32 1 5.5607 -5.2962 0.8126 33 1 5.0855 -4.4206 2.3031 34 1 7.6676 -4.2784 0.7444 35 1 7.3840 -4.0029 2.4898 36 1 7.5173 -2.0271 0.3553 37 1 7.2719 -1.7488 2.1029 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259886612.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:41 Heat of formation + Delta-G solvation = 38.223786 kcal Electronic energy + Delta-G solvation = -18831.518399 eV Core-core repulsion = 16121.110665 eV Total energy + Delta-G solvation = -2710.407733 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.07815 -37.94749 -33.82971 -32.25362 -30.83706 -28.61975 -28.07985 -27.17365 -25.48373 -22.66217 -21.82138 -20.40913 -19.73421 -17.93462 -16.96419 -16.38940 -15.18344 -15.05349 -14.48711 -14.24234 -13.94705 -13.03920 -12.93595 -12.76466 -12.69242 -12.41536 -12.16318 -11.91437 -11.50900 -11.39185 -11.14914 -11.00701 -10.80731 -10.76769 -10.65733 -10.43754 -10.23232 -10.08274 -9.74970 -9.31801 -8.83450 -8.70163 -8.33795 -7.67715 -7.16238 -6.26066 -4.38974 1.68064 2.24735 2.71194 3.16235 3.22040 3.25602 3.66064 4.21735 4.82066 4.95253 5.24245 5.47076 5.52418 5.56997 5.71049 5.74514 5.83224 6.13375 6.18315 6.19376 6.25570 6.38867 6.41135 6.45358 6.50504 6.65368 6.70685 6.77704 6.93404 6.95499 7.14741 7.16950 7.33768 7.60777 7.86073 8.06102 8.29882 8.62500 8.72573 9.27392 10.73326 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.015523 B = 0.009262 C = 0.007229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.394193 B = 3022.252846 C = 3872.397511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.016 4.016 3 N -0.465 5.465 4 C 0.013 3.987 5 C -0.068 4.068 6 C -0.113 4.113 7 C 0.243 3.757 8 H 0.105 0.895 9 C -0.536 4.536 10 H 0.061 0.939 11 C 0.080 3.920 12 N -0.879 5.879 13 Si 0.892 3.108 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.275 1.275 17 N -0.521 5.521 18 C 0.028 3.972 19 C -0.121 4.121 20 C -0.126 4.126 21 C 0.047 3.953 22 S 0.092 5.908 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.059 0.941 27 H 0.089 0.911 28 H 0.057 0.943 29 H 0.269 0.731 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.640 -3.698 3.376 7.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.294 4.294 3 N -0.181 5.181 4 C -0.116 4.116 5 C -0.128 4.128 6 C -0.235 4.235 7 C 0.134 3.866 8 H 0.122 0.878 9 C -0.575 4.575 10 H 0.079 0.921 11 C -0.125 4.125 12 N -0.515 5.515 13 Si 0.719 3.281 14 H -0.199 1.199 15 H -0.209 1.209 16 H -0.200 1.200 17 N -0.246 5.246 18 C -0.100 4.100 19 C -0.159 4.159 20 C -0.165 4.165 21 C -0.082 4.082 22 S 0.346 5.654 23 H 0.091 0.909 24 H 0.089 0.911 25 H 0.095 0.905 26 H 0.077 0.923 27 H 0.108 0.892 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.261 -3.859 3.817 8.287 hybrid contribution 1.138 0.204 -1.837 2.170 sum -5.124 -3.656 1.980 6.598 Atomic orbital electron populations 1.20195 0.86671 1.02871 1.02596 1.26647 1.00903 0.92775 1.09025 1.65991 1.04936 1.32194 1.14959 1.19902 0.89522 0.94436 1.07787 1.20243 0.96988 0.93892 1.01643 1.26510 1.00044 0.94403 1.02553 1.18316 0.84983 0.92916 0.90380 0.87776 1.21397 1.11529 1.22581 1.02003 0.92127 1.24981 0.95941 0.93690 0.97922 1.69816 1.11743 1.31719 1.38221 0.86639 0.77896 0.78932 0.84646 1.19906 1.20940 1.20024 1.65184 1.11878 1.05214 1.42281 1.23271 0.97559 0.89975 0.99241 1.22421 0.96022 0.97730 0.99713 1.22354 0.96709 0.97128 1.00276 1.22556 0.91229 0.93220 1.01146 1.83690 0.98792 1.12775 1.70141 0.90907 0.91113 0.90497 0.92270 0.89217 0.92390 0.92074 0.91978 0.91335 0.92461 0.92091 0.92403 0.92602 0.90773 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.86 10.46 36.01 0.38 -0.48 16 2 C -0.02 -0.30 7.39 -13.46 -0.10 -0.40 16 3 N -0.47 -9.93 10.53 -8.06 -0.08 -10.02 16 4 C 0.01 0.28 6.74 -84.22 -0.57 -0.28 16 5 C -0.07 -1.39 9.81 36.01 0.35 -1.04 16 6 C -0.11 -2.57 5.45 -35.92 -0.20 -2.76 16 7 C 0.24 5.73 2.11 -70.02 -0.15 5.58 16 8 H 0.10 2.70 5.50 -51.93 -0.29 2.42 16 9 C -0.54 -13.40 6.23 -34.44 -0.21 -13.61 16 10 H 0.06 1.55 6.49 -52.49 -0.34 1.21 16 11 C 0.08 2.02 5.04 -17.82 -0.09 1.94 16 12 N -0.88 -22.59 12.25 55.43 0.68 -21.91 16 13 Si 0.89 20.08 29.54 -169.99 -5.02 15.05 16 14 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 17 N -0.52 -11.29 5.19 -225.28 -1.17 -12.46 16 18 C 0.03 0.56 5.42 -1.90 -0.01 0.55 16 19 C -0.12 -2.01 7.06 -24.87 -0.18 -2.19 16 20 C -0.13 -2.17 6.93 -25.38 -0.18 -2.34 16 21 C 0.05 0.96 6.45 -2.76 -0.02 0.94 16 22 S 0.09 1.78 20.04 -107.50 -2.15 -0.37 16 23 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 26 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.09 2.00 7.03 -51.93 -0.37 1.64 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.27 6.67 8.32 -40.82 -0.34 6.33 16 30 H 0.06 1.19 5.70 -50.27 -0.29 0.90 16 31 H 0.07 1.49 5.45 -51.93 -0.28 1.21 16 32 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.07 1.73 6.42 -51.93 -0.33 1.40 16 37 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 304.29 15.07 4.59 4.59 Total: -1.00 -26.90 304.29 -9.39 -36.28 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -5.26 Total: 2.95 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -0.96 Total: -14.11 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: -0.58 Total: -44.39 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.05 kcal Atomic # 16 Polarization: 1.78 SS G_CDS: -2.15 Total: -0.37 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -26.90 -9.39 -36.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259886612.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.507 kcal (2) G-P(sol) polarization free energy of solvation -26.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds