Wall clock time and date at job start Mon Mar 30 2020 06:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29025 * 124.91423 * 2 1 4 4 C 1.31788 * 117.12393 * 180.02562 * 3 2 1 5 5 C 1.50706 * 122.74711 * 179.73097 * 4 3 2 6 6 C 1.33629 * 114.50125 * 359.97438 * 4 3 2 7 7 C 1.50696 * 126.04061 * 179.97438 * 6 4 3 8 8 H 1.09002 * 109.47091 * 14.99846 * 7 6 4 9 9 C 1.50700 * 109.47220 * 255.00312 * 7 6 4 10 10 H 1.08002 * 119.99865 * 305.38410 * 9 7 6 11 11 C 1.37876 * 120.00661 * 125.38348 * 9 7 6 12 12 N 1.31525 * 119.99622 * 5.33719 * 11 9 7 13 13 Si 1.86800 * 120.00470 * 185.33626 * 11 9 7 14 14 H 1.48492 * 109.46851 * 60.00260 * 13 11 9 15 15 H 1.48498 * 109.47093 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.46837 * 299.99960 * 13 11 9 17 17 N 1.46895 * 109.47901 * 135.00028 * 7 6 4 18 18 C 1.48538 * 110.99994 * 75.30404 * 17 7 6 19 19 C 1.54935 * 103.22297 * 159.72760 * 18 17 7 20 20 C 1.54592 * 102.92583 * 322.58440 * 19 18 17 21 21 C 1.47897 * 111.00662 * 192.70649 * 17 7 6 22 22 S 1.70973 * 124.91959 * 180.02562 * 2 1 3 23 23 H 1.08999 * 109.47058 * 90.02826 * 1 2 3 24 24 H 1.09000 * 109.46514 * 210.02164 * 1 2 3 25 25 H 1.08999 * 109.47375 * 330.02111 * 1 2 3 26 26 H 1.09000 * 109.47007 * 90.01726 * 5 4 3 27 27 H 1.08993 * 109.46852 * 210.02227 * 5 4 3 28 28 H 1.09004 * 109.46907 * 330.02350 * 5 4 3 29 29 H 0.96998 * 119.99801 * 174.98360 * 12 11 9 30 30 H 1.08996 * 110.66826 * 278.15778 * 18 17 7 31 31 H 1.09001 * 110.66584 * 41.29143 * 18 17 7 32 32 H 1.09011 * 110.72218 * 204.23123 * 19 18 17 33 33 H 1.08997 * 110.88219 * 81.02173 * 19 18 17 34 34 H 1.08993 * 110.31308 * 263.04902 * 20 19 18 35 35 H 1.09000 * 110.30775 * 140.87357 * 20 19 18 36 36 H 1.09005 * 109.91093 * 333.50846 * 21 17 7 37 37 H 1.09002 * 109.91701 * 94.79880 * 21 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 -0.0005 5 6 4.5307 2.0247 -0.0065 6 6 3.9354 -0.4005 -0.0004 7 6 5.3575 -0.8993 -0.0015 8 1 6.0291 -0.0827 0.2636 9 6 5.7086 -1.4129 -1.3741 10 1 5.0933 -2.1671 -1.8421 11 6 6.8153 -0.9202 -2.0324 12 7 7.6234 -0.0805 -1.4226 13 14 7.1671 -1.4450 -3.7903 14 1 6.0289 -1.0548 -4.6605 15 1 8.4061 -0.7796 -4.2670 16 1 7.3463 -2.9183 -3.8405 17 7 5.4964 -1.9852 0.9780 18 6 4.8916 -3.2424 0.4682 19 6 5.5697 -4.3368 1.3302 20 6 7.0155 -3.8109 1.4821 21 6 6.9208 -2.2951 1.2274 22 16 2.4857 -1.4019 -0.0006 23 1 -0.3633 -0.0005 -1.0277 24 1 -0.3632 -0.8898 0.5142 25 1 -0.3634 0.8901 0.5135 26 1 4.7681 2.3051 1.0197 27 1 5.4425 1.7202 -0.5203 28 1 4.0897 2.8772 -0.5233 29 1 8.4401 0.2096 -1.8582 30 1 3.8131 -3.2421 0.6258 31 1 5.1273 -3.3826 -0.5867 32 1 5.5607 -5.2962 0.8126 33 1 5.0855 -4.4206 2.3031 34 1 7.6676 -4.2784 0.7444 35 1 7.3840 -4.0029 2.4898 36 1 7.5173 -2.0271 0.3553 37 1 7.2719 -1.7488 2.1029 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259886612.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:40 Heat of formation + Delta-G solvation = 21.799101 kcal Electronic energy + Delta-G solvation = -18832.230627 eV Core-core repulsion = 16121.110665 eV Total energy + Delta-G solvation = -2711.119961 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.69639 -39.55227 -35.52273 -33.92690 -32.42005 -30.02347 -29.63929 -28.80655 -27.32908 -24.33008 -23.32602 -21.92891 -21.34369 -19.61368 -18.59742 -18.16623 -16.86806 -16.68305 -16.10765 -15.75169 -15.52885 -14.72312 -14.48397 -14.35130 -14.07651 -13.99551 -13.65309 -13.34387 -13.06110 -12.98355 -12.84025 -12.70252 -12.51347 -12.36617 -12.14750 -11.95774 -11.92094 -11.72746 -11.30897 -11.07597 -10.74663 -10.29340 -9.93782 -9.29099 -8.92312 -8.15282 -6.34723 0.09304 0.68954 1.10005 1.34348 1.37768 1.43091 2.01452 2.34569 3.05083 3.39492 3.62552 4.03592 4.04531 4.25435 4.31121 4.51553 4.64517 4.68430 4.72880 4.74966 4.79092 4.88474 4.96685 5.04282 5.06857 5.09331 5.15540 5.18257 5.33587 5.36758 5.41101 5.55645 5.60374 5.68982 6.02214 6.33893 6.55537 6.80920 7.02258 7.32846 8.81365 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.015523 B = 0.009262 C = 0.007229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.394193 B = 3022.252846 C = 3872.397511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.002 4.002 3 N -0.491 5.491 4 C 0.002 3.998 5 C -0.061 4.061 6 C -0.158 4.158 7 C 0.254 3.746 8 H 0.071 0.929 9 C -0.538 4.538 10 H 0.050 0.950 11 C 0.041 3.959 12 N -0.901 5.901 13 Si 0.941 3.059 14 H -0.279 1.279 15 H -0.281 1.281 16 H -0.270 1.270 17 N -0.526 5.526 18 C 0.027 3.973 19 C -0.112 4.112 20 C -0.120 4.120 21 C 0.044 3.956 22 S 0.123 5.877 23 H 0.092 0.908 24 H 0.098 0.902 25 H 0.088 0.912 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.268 0.732 30 H 0.068 0.932 31 H 0.045 0.955 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.040 0.960 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.473 -5.109 3.810 9.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.280 4.280 3 N -0.208 5.208 4 C -0.127 4.127 5 C -0.120 4.120 6 C -0.280 4.280 7 C 0.145 3.855 8 H 0.089 0.911 9 C -0.578 4.578 10 H 0.069 0.931 11 C -0.162 4.162 12 N -0.538 5.538 13 Si 0.767 3.233 14 H -0.204 1.204 15 H -0.206 1.206 16 H -0.195 1.195 17 N -0.250 5.250 18 C -0.102 4.102 19 C -0.150 4.150 20 C -0.158 4.158 21 C -0.084 4.084 22 S 0.378 5.622 23 H 0.110 0.890 24 H 0.117 0.883 25 H 0.107 0.893 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.058 0.942 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.085 -5.288 4.253 10.555 hybrid contribution 1.574 0.655 -1.922 2.569 sum -6.511 -4.633 2.331 8.324 Atomic orbital electron populations 1.20471 0.82717 1.04862 1.04441 1.27667 1.03102 0.91901 1.05343 1.66081 1.04450 1.33159 1.17064 1.20183 0.90463 0.94782 1.07318 1.20140 0.95777 0.94005 1.02094 1.26417 1.00993 0.95515 1.05098 1.17950 0.85290 0.92373 0.89931 0.91120 1.21481 1.11303 1.22346 1.02669 0.93137 1.25537 0.96052 0.94014 1.00567 1.69921 1.11996 1.32699 1.39170 0.85874 0.77448 0.78770 0.81235 1.20433 1.20629 1.19476 1.65148 1.12488 1.05739 1.41646 1.23281 0.98133 0.90267 0.98482 1.22423 0.94985 0.97452 1.00097 1.22324 0.97454 0.94143 1.01868 1.22552 0.90274 0.96029 0.99580 1.83396 0.96951 1.12189 1.69700 0.88951 0.88338 0.89280 0.91198 0.91830 0.91166 0.92293 0.91381 0.93700 0.90163 0.90449 0.92187 0.90026 0.94189 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.52 10.46 71.24 0.75 -0.78 16 2 C 0.00 -0.08 7.39 88.52 0.65 0.58 16 3 N -0.49 -20.47 10.53 -179.40 -1.89 -22.36 16 4 C 0.00 0.07 6.74 41.52 0.28 0.35 16 5 C -0.06 -2.55 9.81 71.24 0.70 -1.86 16 6 C -0.16 -7.26 5.45 24.64 0.13 -7.12 16 7 C 0.25 12.37 2.11 43.42 0.09 12.46 16 8 H 0.07 3.88 5.50 -2.39 -0.01 3.87 16 9 C -0.54 -27.73 6.23 25.60 0.16 -27.57 16 10 H 0.05 2.65 6.49 -2.91 -0.02 2.63 16 11 C 0.04 2.14 5.04 84.65 0.43 2.57 16 12 N -0.90 -48.25 12.25 21.45 0.26 -47.98 16 13 Si 0.94 41.94 29.54 68.60 2.03 43.97 16 14 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 15 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 16 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 17 N -0.53 -23.00 5.19 -866.65 -4.50 -27.50 16 18 C 0.03 1.04 5.42 86.65 0.47 1.51 16 19 C -0.11 -3.43 7.06 31.80 0.22 -3.21 16 20 C -0.12 -3.90 6.93 31.47 0.22 -3.69 16 21 C 0.04 1.84 6.45 86.45 0.56 2.39 16 22 S 0.12 4.59 20.04 -56.49 -1.13 3.46 16 23 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 27 H 0.06 2.99 7.03 -2.39 -0.02 2.98 16 28 H 0.07 2.69 8.14 -2.38 -0.02 2.67 16 29 H 0.27 13.77 8.32 -92.71 -0.77 13.00 16 30 H 0.07 2.51 5.70 -3.45 -0.02 2.49 16 31 H 0.04 1.95 5.45 -2.39 -0.01 1.94 16 32 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 33 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.04 1.94 6.42 -2.38 -0.02 1.92 16 37 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -59.33 304.29 0.49 -58.85 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 1.06 Total: 15.93 kcal Atomic # 6 Polarization: -29.02 SS G_CDS: 4.66 Total: -24.36 kcal Atomic # 7 Polarization: -91.72 SS G_CDS: -6.13 Total: -97.84 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Atomic # 16 Polarization: 4.59 SS G_CDS: -1.13 Total: 3.46 kcal Total: -59.33 0.49 -58.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259886612.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.646 kcal (2) G-P(sol) polarization free energy of solvation -59.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds