Wall clock time and date at job start Mon Mar 30 2020 06:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30079 * 121.55792 * 2 1 4 4 S 1.69603 * 107.14868 * 180.02562 * 3 2 1 5 5 C 1.72048 * 95.70589 * 0.02562 * 4 3 2 6 6 C 1.50703 * 127.24595 * 179.97438 * 5 4 3 7 7 C 1.35131 * 105.50121 * 0.22541 * 5 4 3 8 8 C 1.50705 * 122.61940 * 179.77613 * 7 5 4 9 9 N 1.46899 * 109.47410 * 258.69899 * 8 7 5 10 10 C 1.47449 * 110.99615 * 76.65892 * 9 8 7 11 11 C 1.54309 * 107.23364 * 123.25932 * 10 9 8 12 12 C 1.55149 * 103.02024 * 22.28127 * 11 10 9 13 13 C 1.47839 * 111.00227 * 197.50226 * 9 8 7 14 14 H 1.09000 * 110.37399 * 332.46769 * 13 9 8 15 15 C 1.50692 * 110.37499 * 94.80910 * 13 9 8 16 16 H 1.08007 * 120.00204 * 0.02562 * 15 13 9 17 17 C 1.37876 * 120.00426 * 179.97438 * 15 13 9 18 18 N 1.31519 * 119.99795 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 120.00333 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.47200 * 90.00100 * 19 17 15 21 21 H 1.48503 * 109.47068 * 209.99846 * 19 17 15 22 22 H 1.48495 * 109.47246 * 330.00178 * 19 17 15 23 23 H 1.09000 * 109.47747 * 95.24502 * 1 2 3 24 24 H 1.09002 * 109.47400 * 215.24385 * 1 2 3 25 25 H 1.08999 * 109.47369 * 335.24029 * 1 2 3 26 26 H 1.08996 * 109.47685 * 0.02562 * 6 5 4 27 27 H 1.09001 * 109.47045 * 120.02678 * 6 5 4 28 28 H 1.08998 * 109.46721 * 240.02097 * 6 5 4 29 29 H 1.08996 * 109.46819 * 18.70194 * 8 7 5 30 30 H 1.09004 * 109.46765 * 138.70022 * 8 7 5 31 31 H 1.09000 * 109.88750 * 242.66532 * 10 9 8 32 32 H 1.09000 * 109.88919 * 3.85237 * 10 9 8 33 33 H 1.09004 * 110.70675 * 140.66464 * 11 10 9 34 34 H 1.09004 * 110.70572 * 263.90320 * 11 10 9 35 35 H 1.08995 * 110.98563 * 82.43800 * 12 11 10 36 36 H 1.08996 * 110.99382 * 206.25730 * 12 11 10 37 37 H 0.96999 * 120.00107 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1878 1.1084 0.0000 4 16 3.8304 0.6864 -0.0007 5 6 3.5701 -1.0143 -0.0018 6 6 4.6179 -2.0974 -0.0033 7 6 2.2283 -1.1742 -0.0067 8 6 1.5719 -2.5308 -0.0141 9 7 1.1186 -2.8481 -1.3749 10 6 2.2508 -3.2542 -2.2277 11 6 1.9245 -4.6562 -2.7836 12 6 0.3785 -4.7253 -2.6724 13 6 0.1239 -3.9418 -1.3606 14 1 0.2819 -4.5870 -0.4964 15 6 -1.2741 -3.3794 -1.3483 16 1 -1.4261 -2.3101 -1.3512 17 6 -2.3592 -4.2298 -1.3345 18 7 -2.1742 -5.5319 -1.3315 19 14 -4.0922 -3.5327 -1.3185 20 1 -4.5660 -3.3522 -2.7144 21 1 -4.9966 -4.4709 -0.6063 22 1 -4.0917 -2.2210 -0.6224 23 1 -0.3634 -0.0939 -1.0233 24 1 -0.3634 -0.8393 0.5930 25 1 -0.3634 0.9332 0.4304 26 1 5.6091 -1.6442 -0.0032 27 1 4.5016 -2.7168 0.8861 28 1 4.5008 -2.7149 -0.8939 29 1 2.2888 -3.2831 0.3147 30 1 0.7165 -2.5242 0.6615 31 1 2.3682 -2.5477 -3.0493 32 1 3.1653 -3.2935 -1.6359 33 1 2.2403 -4.7417 -3.8234 34 1 2.3897 -5.4306 -2.1735 35 1 -0.0962 -4.2318 -3.5203 36 1 0.0392 -5.7572 -2.5830 37 1 -2.9376 -6.1303 -1.3222 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259958669.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:35 Heat of formation + Delta-G solvation = 35.038595 kcal Electronic energy + Delta-G solvation = -18723.046754 eV Core-core repulsion = 16012.500900 eV Total energy + Delta-G solvation = -2710.545854 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.49172 -37.55815 -33.55067 -32.50313 -31.27511 -28.94499 -28.24088 -27.72709 -24.69260 -23.99936 -21.35549 -20.15553 -19.58558 -18.20166 -17.49535 -16.42600 -15.56614 -14.71592 -14.50214 -14.34432 -13.94262 -13.40430 -13.35816 -13.14881 -12.43944 -12.33573 -12.24863 -11.99780 -11.80496 -11.59843 -11.48367 -11.06211 -10.89613 -10.77288 -10.57748 -10.51537 -10.09618 -10.04177 -9.78112 -9.65769 -9.04728 -8.93731 -8.41823 -8.17100 -7.26824 -6.02662 -4.03487 0.98314 1.75840 2.15588 2.76501 3.31349 3.38424 3.41326 4.41330 4.73193 5.03152 5.19348 5.27887 5.29740 5.36063 5.47702 5.63271 5.68526 5.76120 5.84185 5.87189 6.04635 6.09307 6.19208 6.22142 6.34310 6.41937 6.54546 6.58309 6.64421 6.98758 7.04177 7.11850 7.42383 7.50214 7.86039 8.09608 8.20049 8.50940 9.02984 9.60824 11.06676 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.022705 B = 0.006626 C = 0.005409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.908842 B = 4224.716889 C = 5174.842533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.152 3.848 3 N -0.472 5.472 4 S 0.198 5.802 5 C -0.171 4.171 6 C -0.080 4.080 7 C -0.143 4.143 8 C 0.121 3.879 9 N -0.517 5.517 10 C 0.042 3.958 11 C -0.151 4.151 12 C -0.103 4.103 13 C 0.210 3.790 14 H 0.014 0.986 15 C -0.493 4.493 16 H 0.066 0.934 17 C 0.059 3.941 18 N -0.896 5.896 19 Si 0.893 3.107 20 H -0.282 1.282 21 H -0.289 1.289 22 H -0.273 1.273 23 H 0.094 0.906 24 H 0.088 0.912 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.034 0.966 30 H 0.087 0.913 31 H 0.058 0.942 32 H 0.042 0.958 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.105 5.178 2.415 12.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.026 4.026 3 N -0.293 5.293 4 S 0.353 5.647 5 C -0.301 4.301 6 C -0.139 4.139 7 C -0.160 4.160 8 C -0.010 4.010 9 N -0.242 5.242 10 C -0.086 4.086 11 C -0.190 4.190 12 C -0.142 4.142 13 C 0.105 3.895 14 H 0.032 0.968 15 C -0.532 4.532 16 H 0.084 0.916 17 C -0.143 4.143 18 N -0.535 5.535 19 Si 0.721 3.279 20 H -0.208 1.208 21 H -0.215 1.215 22 H -0.198 1.198 23 H 0.112 0.888 24 H 0.107 0.893 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.104 0.896 29 H 0.052 0.948 30 H 0.106 0.894 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.670 7.545 2.234 14.075 hybrid contribution -1.377 -2.074 0.211 2.499 sum 10.292 5.471 2.445 11.910 Atomic orbital electron populations 1.20609 0.85873 1.02884 1.04846 1.21404 0.99328 0.87628 0.94209 1.76766 0.99210 1.26174 1.27116 1.83713 1.12597 0.97449 1.70891 1.25104 0.98192 1.01056 1.05714 1.20396 0.94722 0.95099 1.03648 1.20004 0.91577 0.98226 1.06156 1.20693 0.97958 0.89141 0.93201 1.63565 1.10259 1.42991 1.07344 1.22875 0.93142 0.95423 0.97118 1.22890 1.00088 0.96485 0.99532 1.22622 0.90244 1.01546 0.99797 1.20147 0.90058 0.86083 0.93254 0.96838 1.21057 0.89130 0.93446 1.49579 0.91605 1.24943 0.99051 0.94819 0.95444 1.69954 1.30599 1.01856 1.51118 0.86576 0.84386 0.78855 0.78067 1.20809 1.21492 1.19770 0.88806 0.89298 0.91621 0.91209 0.90218 0.89647 0.94773 0.89431 0.92373 0.93970 0.92717 0.92960 0.92514 0.90939 0.93082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.31 9.84 36.00 0.35 -0.96 16 2 C 0.15 2.61 6.71 -83.49 -0.56 2.05 16 3 N -0.47 -8.13 12.05 32.02 0.39 -7.75 16 4 S 0.20 2.86 23.72 -107.50 -2.55 0.31 16 5 C -0.17 -2.46 6.47 -35.41 -0.23 -2.69 16 6 C -0.08 -0.89 9.25 36.01 0.33 -0.56 16 7 C -0.14 -2.36 5.04 -105.88 -0.53 -2.89 16 8 C 0.12 2.16 4.25 -4.97 -0.02 2.14 16 9 N -0.52 -10.36 4.74 -226.19 -1.07 -11.43 16 10 C 0.04 0.76 6.54 -2.84 -0.02 0.74 16 11 C -0.15 -2.75 6.94 -24.91 -0.17 -2.92 16 12 C -0.10 -2.32 5.86 -24.59 -0.14 -2.46 16 13 C 0.21 4.93 2.22 -67.35 -0.15 4.78 16 14 H 0.01 0.36 7.81 -51.93 -0.41 -0.05 16 15 C -0.49 -12.72 8.82 -34.44 -0.30 -13.03 16 16 H 0.07 1.69 7.81 -52.48 -0.41 1.28 16 17 C 0.06 1.55 5.34 -17.82 -0.10 1.46 16 18 N -0.90 -24.69 12.27 55.43 0.68 -24.01 16 19 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 23 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 24 H 0.09 1.47 6.79 -51.93 -0.35 1.11 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 28 H 0.09 0.97 5.49 -51.93 -0.29 0.68 16 29 H 0.03 0.57 6.91 -51.93 -0.36 0.21 16 30 H 0.09 1.65 6.75 -51.93 -0.35 1.30 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.04 0.66 4.18 -51.93 -0.22 0.44 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 1.34 8.05 -51.93 -0.42 0.92 16 36 H 0.07 1.75 7.57 -51.93 -0.39 1.36 16 37 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 307.55 15.07 4.63 4.63 Total: -1.00 -27.68 307.55 -9.77 -37.45 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -5.28 Total: -0.53 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -1.54 Total: -14.34 kcal Atomic # 7 Polarization: -43.19 SS G_CDS: -0.01 Total: -43.19 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -2.55 Total: 0.31 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -27.68 -9.77 -37.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259958669.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.485 kcal (2) G-P(sol) polarization free energy of solvation -27.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds