Wall clock time and date at job start Mon Mar 30 2020 06:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30079 * 121.55792 * 2 1 4 4 S 1.69603 * 107.14868 * 180.02562 * 3 2 1 5 5 C 1.72048 * 95.70589 * 0.02562 * 4 3 2 6 6 C 1.50703 * 127.24595 * 179.97438 * 5 4 3 7 7 C 1.35131 * 105.50121 * 0.22541 * 5 4 3 8 8 C 1.50705 * 122.61940 * 179.77613 * 7 5 4 9 9 N 1.46899 * 109.47410 * 258.69899 * 8 7 5 10 10 C 1.47449 * 110.99615 * 76.65892 * 9 8 7 11 11 C 1.54309 * 107.23364 * 123.25932 * 10 9 8 12 12 C 1.55149 * 103.02024 * 22.28127 * 11 10 9 13 13 C 1.47839 * 111.00227 * 197.50226 * 9 8 7 14 14 H 1.09000 * 110.37399 * 332.46769 * 13 9 8 15 15 C 1.50692 * 110.37499 * 94.80910 * 13 9 8 16 16 H 1.08007 * 120.00204 * 0.02562 * 15 13 9 17 17 C 1.37876 * 120.00426 * 179.97438 * 15 13 9 18 18 N 1.31519 * 119.99795 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 120.00333 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.47200 * 90.00100 * 19 17 15 21 21 H 1.48503 * 109.47068 * 209.99846 * 19 17 15 22 22 H 1.48495 * 109.47246 * 330.00178 * 19 17 15 23 23 H 1.09000 * 109.47747 * 95.24502 * 1 2 3 24 24 H 1.09002 * 109.47400 * 215.24385 * 1 2 3 25 25 H 1.08999 * 109.47369 * 335.24029 * 1 2 3 26 26 H 1.08996 * 109.47685 * 0.02562 * 6 5 4 27 27 H 1.09001 * 109.47045 * 120.02678 * 6 5 4 28 28 H 1.08998 * 109.46721 * 240.02097 * 6 5 4 29 29 H 1.08996 * 109.46819 * 18.70194 * 8 7 5 30 30 H 1.09004 * 109.46765 * 138.70022 * 8 7 5 31 31 H 1.09000 * 109.88750 * 242.66532 * 10 9 8 32 32 H 1.09000 * 109.88919 * 3.85237 * 10 9 8 33 33 H 1.09004 * 110.70675 * 140.66464 * 11 10 9 34 34 H 1.09004 * 110.70572 * 263.90320 * 11 10 9 35 35 H 1.08995 * 110.98563 * 82.43800 * 12 11 10 36 36 H 1.08996 * 110.99382 * 206.25730 * 12 11 10 37 37 H 0.96999 * 120.00107 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1878 1.1084 0.0000 4 16 3.8304 0.6864 -0.0007 5 6 3.5701 -1.0143 -0.0018 6 6 4.6179 -2.0974 -0.0033 7 6 2.2283 -1.1742 -0.0067 8 6 1.5719 -2.5308 -0.0141 9 7 1.1186 -2.8481 -1.3749 10 6 2.2508 -3.2542 -2.2277 11 6 1.9245 -4.6562 -2.7836 12 6 0.3785 -4.7253 -2.6724 13 6 0.1239 -3.9418 -1.3606 14 1 0.2819 -4.5870 -0.4964 15 6 -1.2741 -3.3794 -1.3483 16 1 -1.4261 -2.3101 -1.3512 17 6 -2.3592 -4.2298 -1.3345 18 7 -2.1742 -5.5319 -1.3315 19 14 -4.0922 -3.5327 -1.3185 20 1 -4.5660 -3.3522 -2.7144 21 1 -4.9966 -4.4709 -0.6063 22 1 -4.0917 -2.2210 -0.6224 23 1 -0.3634 -0.0939 -1.0233 24 1 -0.3634 -0.8393 0.5930 25 1 -0.3634 0.9332 0.4304 26 1 5.6091 -1.6442 -0.0032 27 1 4.5016 -2.7168 0.8861 28 1 4.5008 -2.7149 -0.8939 29 1 2.2888 -3.2831 0.3147 30 1 0.7165 -2.5242 0.6615 31 1 2.3682 -2.5477 -3.0493 32 1 3.1653 -3.2935 -1.6359 33 1 2.2403 -4.7417 -3.8234 34 1 2.3897 -5.4306 -2.1735 35 1 -0.0962 -4.2318 -3.5203 36 1 0.0392 -5.7572 -2.5830 37 1 -2.9376 -6.1303 -1.3222 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259958669.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:34 Heat of formation + Delta-G solvation = 19.006135 kcal Electronic energy + Delta-G solvation = -18723.741974 eV Core-core repulsion = 16012.500900 eV Total energy + Delta-G solvation = -2711.241073 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.80993 -39.09651 -34.97436 -34.26865 -32.66886 -30.28760 -30.03100 -28.91381 -26.36199 -25.58913 -22.58858 -21.73489 -21.29823 -19.44942 -18.73017 -18.36010 -17.07595 -16.44262 -15.99989 -15.74879 -15.38792 -14.69184 -14.62306 -14.31902 -14.09225 -13.80946 -13.56947 -13.28211 -13.16235 -13.01002 -12.92208 -12.86111 -12.53850 -12.44385 -12.18444 -11.98660 -11.65042 -11.55409 -11.32974 -11.30445 -10.91168 -10.42951 -10.15138 -9.37908 -8.86966 -8.05148 -6.11635 -0.22117 0.59540 0.93667 1.45003 1.46519 1.48102 1.56280 2.47859 3.25395 3.54679 3.63819 3.87746 4.09175 4.15460 4.20777 4.35631 4.45363 4.49676 4.61359 4.66368 4.70253 4.80128 4.84886 4.89754 4.91235 5.02388 5.10051 5.22837 5.23409 5.32420 5.39319 5.60192 5.69779 5.84527 5.85339 6.27808 6.56881 6.67395 7.00636 7.56063 9.02667 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.022705 B = 0.006626 C = 0.005409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.908842 B = 4224.716889 C = 5174.842533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.141 3.859 3 N -0.505 5.505 4 S 0.242 5.758 5 C -0.154 4.154 6 C -0.084 4.084 7 C -0.169 4.169 8 C 0.130 3.870 9 N -0.527 5.527 10 C 0.043 3.957 11 C -0.139 4.139 12 C -0.102 4.102 13 C 0.214 3.786 14 H -0.015 1.015 15 C -0.501 4.501 16 H 0.060 0.940 17 C 0.013 3.987 18 N -0.925 5.925 19 Si 0.948 3.052 20 H -0.281 1.281 21 H -0.288 1.288 22 H -0.265 1.265 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.047 0.953 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.037 0.963 36 H 0.047 0.953 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.190 5.876 2.440 14.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.036 4.036 3 N -0.326 5.326 4 S 0.397 5.603 5 C -0.285 4.285 6 C -0.142 4.142 7 C -0.185 4.185 8 C -0.001 4.001 9 N -0.252 5.252 10 C -0.084 4.084 11 C -0.177 4.177 12 C -0.141 4.141 13 C 0.107 3.893 14 H 0.003 0.997 15 C -0.540 4.540 16 H 0.078 0.922 17 C -0.185 4.185 18 N -0.565 5.565 19 Si 0.775 3.225 20 H -0.208 1.208 21 H -0.214 1.214 22 H -0.190 1.190 23 H 0.096 0.904 24 H 0.098 0.902 25 H 0.096 0.904 26 H 0.115 0.885 27 H 0.111 0.889 28 H 0.107 0.893 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 13.761 8.260 2.261 16.208 hybrid contribution -1.903 -2.241 0.224 2.948 sum 11.858 6.019 2.484 13.528 Atomic orbital electron populations 1.20495 0.86280 1.03155 1.03700 1.21441 0.99466 0.88020 0.94694 1.76614 1.01165 1.26763 1.28108 1.83536 1.10336 0.96846 1.69537 1.25579 0.98055 1.02152 1.02704 1.20593 0.94913 0.94383 1.04299 1.19844 0.92494 0.97145 1.09041 1.20542 0.97586 0.90418 0.91548 1.63436 1.11060 1.41526 1.09148 1.22933 0.93382 0.94976 0.97150 1.22816 0.96342 0.97172 1.01357 1.22418 0.93730 0.99476 0.98451 1.19907 0.90237 0.86649 0.92490 0.99739 1.21357 0.90719 0.93217 1.48682 0.92152 1.25613 1.02355 0.95093 0.95473 1.70067 1.31282 1.02792 1.52347 0.85699 0.80446 0.78453 0.77916 1.20762 1.21419 1.18972 0.90399 0.90210 0.90357 0.88528 0.88886 0.89300 0.93457 0.91470 0.92220 0.91167 0.90459 0.91741 0.94439 0.93424 0.93281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.48 9.84 71.23 0.70 -1.78 16 2 C 0.14 4.74 6.71 42.72 0.29 5.03 16 3 N -0.50 -16.76 12.05 -52.60 -0.63 -17.40 16 4 S 0.24 6.33 23.72 -56.49 -1.34 4.99 16 5 C -0.15 -3.98 6.47 24.97 0.16 -3.82 16 6 C -0.08 -1.50 9.25 71.24 0.66 -0.84 16 7 C -0.17 -5.34 5.04 -20.68 -0.10 -5.44 16 8 C 0.13 4.55 4.25 85.56 0.36 4.91 16 9 N -0.53 -20.94 4.74 -869.54 -4.12 -25.05 16 10 C 0.04 1.44 6.54 86.64 0.57 2.01 16 11 C -0.14 -4.78 6.94 31.78 0.22 -4.56 16 12 C -0.10 -4.62 5.86 31.98 0.19 -4.43 16 13 C 0.21 10.23 2.22 44.64 0.10 10.33 16 14 H -0.02 -0.80 7.81 -2.39 -0.02 -0.82 16 15 C -0.50 -26.49 8.82 25.60 0.23 -26.26 16 16 H 0.06 3.19 7.81 -2.91 -0.02 3.16 16 17 C 0.01 0.70 5.34 84.65 0.45 1.15 16 18 N -0.92 -52.28 12.27 21.45 0.26 -52.01 16 19 Si 0.95 43.12 29.54 68.60 2.03 45.15 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 21 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 22 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 23 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 24 H 0.08 2.73 6.79 -2.39 -0.02 2.72 16 25 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 26 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.09 1.51 8.09 -2.39 -0.02 1.49 16 28 H 0.09 1.61 5.49 -2.39 -0.01 1.59 16 29 H 0.05 1.51 6.91 -2.39 -0.02 1.49 16 30 H 0.07 2.59 6.75 -2.38 -0.02 2.57 16 31 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.07 1.95 4.18 -2.39 -0.01 1.94 16 33 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.06 2.07 8.14 -2.39 -0.02 2.06 16 35 H 0.04 1.80 8.05 -2.39 -0.02 1.78 16 36 H 0.05 2.37 7.57 -2.39 -0.02 2.35 16 37 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -60.15 307.55 1.08 -59.07 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: 1.06 Total: 8.98 kcal Atomic # 6 Polarization: -27.55 SS G_CDS: 3.82 Total: -23.73 kcal Atomic # 7 Polarization: -89.97 SS G_CDS: -4.49 Total: -94.46 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: 6.33 SS G_CDS: -1.34 Total: 4.99 kcal Total: -60.15 1.08 -59.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259958669.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.079 kcal (2) G-P(sol) polarization free energy of solvation -60.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds