Wall clock time and date at job start Mon Mar 30 2020 06:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29024 * 124.91694 * 2 1 4 4 C 1.31788 * 117.12800 * 180.02562 * 3 2 1 5 5 C 1.50694 * 122.75008 * 179.97438 * 4 3 2 6 6 N 1.46911 * 109.46935 * 266.70522 * 5 4 3 7 7 C 1.47438 * 110.99855 * 54.60954 * 6 5 4 8 8 C 1.54313 * 107.23317 * 123.26108 * 7 6 5 9 9 C 1.55144 * 103.02140 * 22.28215 * 8 7 6 10 10 C 1.47838 * 110.99992 * 175.45482 * 6 5 4 11 11 H 1.08996 * 110.37762 * 332.46763 * 10 6 5 12 12 C 1.50703 * 110.37447 * 94.69649 * 10 6 5 13 13 H 1.08001 * 119.99853 * 358.44542 * 12 10 6 14 14 C 1.37878 * 119.99975 * 178.44398 * 12 10 6 15 15 N 1.31511 * 120.00316 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 119.99749 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47234 * 60.00325 * 16 14 12 18 18 H 1.48507 * 109.47074 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47471 * 299.99977 * 16 14 12 20 20 C 1.33637 * 114.49730 * 0.22726 * 4 3 2 21 21 C 1.50700 * 126.03574 * 179.76925 * 20 4 3 22 22 S 1.70984 * 124.91746 * 180.02562 * 2 1 3 23 23 H 1.08995 * 109.47536 * 89.99962 * 1 2 3 24 24 H 1.09008 * 109.46966 * 210.00394 * 1 2 3 25 25 H 1.09004 * 109.47013 * 329.99776 * 1 2 3 26 26 H 1.09003 * 109.47517 * 146.70959 * 5 4 3 27 27 H 1.09002 * 109.47560 * 26.70119 * 5 4 3 28 28 H 1.09004 * 109.88812 * 242.66405 * 7 6 5 29 29 H 1.09004 * 109.89284 * 3.85398 * 7 6 5 30 30 H 1.09004 * 110.71330 * 140.66608 * 8 7 6 31 31 H 1.09003 * 110.70658 * 263.72420 * 8 7 6 32 32 H 1.08995 * 110.99382 * 206.26114 * 9 8 7 33 33 H 1.09000 * 110.98768 * 82.43575 * 9 8 7 34 34 H 0.96991 * 120.00540 * 179.97438 * 15 14 12 35 35 H 1.08995 * 109.46986 * 94.39203 * 21 20 4 36 36 H 1.09007 * 109.46804 * 214.38555 * 21 20 4 37 37 H 1.08994 * 109.47246 * 334.38613 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 -0.0005 5 6 4.5307 2.0246 -0.0012 6 7 4.9088 2.3447 -1.3842 7 6 3.7164 2.6068 -2.2108 8 6 3.8801 4.0172 -2.8152 9 6 5.4133 4.2471 -2.7559 10 6 5.7855 3.5341 -1.4319 11 1 5.5874 4.1861 -0.5812 12 6 7.2339 3.1181 -1.4466 13 1 7.4956 2.0715 -1.3977 14 6 8.2249 4.0738 -1.5226 15 7 7.9063 5.3483 -1.5817 16 14 10.0202 3.5581 -1.5400 17 1 10.2730 2.6850 -2.7144 18 1 10.8811 4.7651 -1.6255 19 1 10.3338 2.8143 -0.2935 20 6 3.9354 -0.4006 -0.0058 21 6 5.3575 -0.8993 -0.0126 22 16 2.4857 -1.4020 -0.0006 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 5.4199 1.7425 0.5626 27 1 4.0694 2.8976 0.4606 28 1 3.6483 1.8671 -3.0086 29 1 2.8203 2.5707 -1.5912 30 1 3.5269 4.0381 -3.8462 31 1 3.3531 4.7578 -2.2137 32 1 5.6471 5.3105 -2.7058 33 1 5.9114 3.7788 -3.6049 34 1 8.6034 6.0206 -1.6347 35 1 5.6780 -1.0969 1.0103 36 1 5.4174 -1.8181 -0.5960 37 1 6.0054 -0.1438 -0.4569 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259970085.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:43 Heat of formation + Delta-G solvation = 41.458864 kcal Electronic energy + Delta-G solvation = -18401.609228 eV Core-core repulsion = 15691.341778 eV Total energy + Delta-G solvation = -2710.267450 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.90942 -37.57551 -33.63351 -32.53258 -30.78135 -30.15442 -28.18514 -26.31809 -24.47989 -24.11716 -22.34864 -19.95894 -19.41828 -18.42689 -17.62982 -16.34151 -15.51991 -14.79382 -14.60039 -14.33127 -13.93968 -13.50111 -13.23604 -13.20422 -12.74233 -12.35316 -12.33228 -12.15619 -11.93129 -11.84246 -11.48054 -11.09327 -10.92518 -10.68826 -10.59249 -10.32054 -10.03276 -9.76103 -9.60610 -9.36668 -8.99350 -8.95459 -8.37403 -8.32226 -7.18296 -5.97787 -3.98890 0.92561 1.51320 1.90856 3.02627 3.35188 3.39617 3.42360 4.23906 4.45126 5.06275 5.23696 5.26631 5.33754 5.35462 5.37298 5.44161 5.75682 5.77569 5.79884 5.81605 5.99812 6.16216 6.23712 6.35935 6.37317 6.49525 6.60659 6.67765 6.69822 7.08235 7.14704 7.51422 7.57685 7.89624 8.01037 8.16870 8.27486 8.56719 9.06276 9.64752 11.11526 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.026641 B = 0.005654 C = 0.004880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.748116 B = 4950.754239 C = 5736.568575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.036 3.964 3 N -0.461 5.461 4 C 0.073 3.927 5 C 0.131 3.869 6 N -0.517 5.517 7 C 0.041 3.959 8 C -0.150 4.150 9 C -0.101 4.101 10 C 0.210 3.790 11 H 0.013 0.987 12 C -0.494 4.494 13 H 0.063 0.937 14 C 0.059 3.941 15 N -0.896 5.896 16 Si 0.896 3.104 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.278 1.278 20 C -0.192 4.192 21 C -0.079 4.079 22 S 0.078 5.922 23 H 0.082 0.918 24 H 0.076 0.924 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.039 0.961 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.055 0.945 34 H 0.260 0.740 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.593 -11.179 2.931 16.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.243 4.243 3 N -0.176 5.176 4 C -0.057 4.057 5 C 0.000 4.000 6 N -0.243 5.243 7 C -0.088 4.088 8 C -0.188 4.188 9 C -0.140 4.140 10 C 0.104 3.896 11 H 0.031 0.969 12 C -0.533 4.533 13 H 0.081 0.919 14 C -0.143 4.143 15 N -0.535 5.535 16 Si 0.724 3.276 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.204 1.204 20 C -0.313 4.313 21 C -0.138 4.138 22 S 0.332 5.668 23 H 0.100 0.900 24 H 0.095 0.905 25 H 0.104 0.896 26 H 0.108 0.892 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -11.724 -11.975 2.742 16.982 hybrid contribution 1.023 1.192 0.227 1.587 sum -10.702 -10.783 2.969 15.479 Atomic orbital electron populations 1.20363 0.85646 1.03704 1.03531 1.26769 1.01278 0.90858 1.05380 1.66127 1.04935 1.31418 1.15119 1.20284 0.89527 0.94451 1.01460 1.20699 0.94207 0.91968 0.93088 1.63780 1.13479 1.40568 1.06431 1.22757 0.93387 0.95653 0.96965 1.22868 0.99926 0.96741 0.99295 1.22604 0.90243 1.01511 0.99635 1.20153 0.91544 0.84560 0.93323 0.96893 1.20998 0.89414 0.93270 1.49629 0.91924 1.24941 0.98959 0.94897 0.95460 1.69946 1.32955 0.99738 1.50842 0.86604 0.84726 0.77728 0.78565 1.20296 1.21503 1.20356 1.25647 0.99791 0.95053 1.10806 1.20324 0.89050 1.02176 1.02234 1.83684 0.98986 1.13399 1.70699 0.89962 0.90535 0.89583 0.89227 0.94252 0.92877 0.92615 0.92895 0.92994 0.90874 0.92586 0.93026 0.91146 0.91612 0.88088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 10.46 36.00 0.38 -0.31 16 2 C 0.04 0.49 7.39 -13.46 -0.10 0.39 16 3 N -0.46 -7.91 9.16 -8.06 -0.07 -7.98 16 4 C 0.07 1.31 5.26 -84.23 -0.44 0.86 16 5 C 0.13 2.64 4.67 -4.97 -0.02 2.61 16 6 N -0.52 -11.45 4.90 -226.18 -1.11 -12.56 16 7 C 0.04 0.84 6.24 -2.84 -0.02 0.82 16 8 C -0.15 -3.06 6.94 -24.91 -0.17 -3.23 16 9 C -0.10 -2.43 5.81 -24.59 -0.14 -2.58 16 10 C 0.21 5.31 2.35 -67.34 -0.16 5.15 16 11 H 0.01 0.37 7.70 -51.93 -0.40 -0.03 16 12 C -0.49 -13.46 8.85 -34.44 -0.30 -13.77 16 13 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 14 C 0.06 1.61 5.34 -17.82 -0.10 1.52 16 15 N -0.90 -25.55 12.15 55.43 0.67 -24.87 16 16 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 C -0.19 -3.02 6.59 -35.92 -0.24 -3.26 16 21 C -0.08 -1.11 9.94 36.01 0.36 -0.75 16 22 S 0.08 1.01 23.18 -107.50 -2.49 -1.48 16 23 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 25 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.09 1.79 7.44 -51.93 -0.39 1.40 16 27 H 0.04 0.83 7.98 -51.93 -0.41 0.41 16 28 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.06 1.12 5.81 -51.93 -0.30 0.82 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.07 1.88 7.49 -51.93 -0.39 1.49 16 33 H 0.06 1.40 8.05 -51.93 -0.42 0.98 16 34 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.10 1.66 7.30 -51.93 -0.38 1.28 16 LS Contribution 313.13 15.07 4.72 4.72 Total: -1.00 -29.42 313.13 -9.88 -39.30 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -5.62 Total: -0.81 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: -0.96 Total: -12.54 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: -0.51 Total: -45.42 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.49 Total: -1.48 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.42 -9.88 -39.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259970085.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.757 kcal (2) G-P(sol) polarization free energy of solvation -29.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds