Wall clock time and date at job start Mon Mar 30 2020 06:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29024 * 124.91694 * 2 1 4 4 C 1.31788 * 117.12800 * 180.02562 * 3 2 1 5 5 C 1.50694 * 122.75008 * 179.97438 * 4 3 2 6 6 N 1.46911 * 109.46935 * 266.70522 * 5 4 3 7 7 C 1.47438 * 110.99855 * 54.60954 * 6 5 4 8 8 C 1.54313 * 107.23317 * 123.26108 * 7 6 5 9 9 C 1.55144 * 103.02140 * 22.28215 * 8 7 6 10 10 C 1.47838 * 110.99992 * 175.45482 * 6 5 4 11 11 H 1.08996 * 110.37762 * 332.46763 * 10 6 5 12 12 C 1.50703 * 110.37447 * 94.69649 * 10 6 5 13 13 H 1.08001 * 119.99853 * 358.44542 * 12 10 6 14 14 C 1.37878 * 119.99975 * 178.44398 * 12 10 6 15 15 N 1.31511 * 120.00316 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 119.99749 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47234 * 60.00325 * 16 14 12 18 18 H 1.48507 * 109.47074 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47471 * 299.99977 * 16 14 12 20 20 C 1.33637 * 114.49730 * 0.22726 * 4 3 2 21 21 C 1.50700 * 126.03574 * 179.76925 * 20 4 3 22 22 S 1.70984 * 124.91746 * 180.02562 * 2 1 3 23 23 H 1.08995 * 109.47536 * 89.99962 * 1 2 3 24 24 H 1.09008 * 109.46966 * 210.00394 * 1 2 3 25 25 H 1.09004 * 109.47013 * 329.99776 * 1 2 3 26 26 H 1.09003 * 109.47517 * 146.70959 * 5 4 3 27 27 H 1.09002 * 109.47560 * 26.70119 * 5 4 3 28 28 H 1.09004 * 109.88812 * 242.66405 * 7 6 5 29 29 H 1.09004 * 109.89284 * 3.85398 * 7 6 5 30 30 H 1.09004 * 110.71330 * 140.66608 * 8 7 6 31 31 H 1.09003 * 110.70658 * 263.72420 * 8 7 6 32 32 H 1.08995 * 110.99382 * 206.26114 * 9 8 7 33 33 H 1.09000 * 110.98768 * 82.43575 * 9 8 7 34 34 H 0.96991 * 120.00540 * 179.97438 * 15 14 12 35 35 H 1.08995 * 109.46986 * 94.39203 * 21 20 4 36 36 H 1.09007 * 109.46804 * 214.38555 * 21 20 4 37 37 H 1.08994 * 109.47246 * 334.38613 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 -0.0005 5 6 4.5307 2.0246 -0.0012 6 7 4.9088 2.3447 -1.3842 7 6 3.7164 2.6068 -2.2108 8 6 3.8801 4.0172 -2.8152 9 6 5.4133 4.2471 -2.7559 10 6 5.7855 3.5341 -1.4319 11 1 5.5874 4.1861 -0.5812 12 6 7.2339 3.1181 -1.4466 13 1 7.4956 2.0715 -1.3977 14 6 8.2249 4.0738 -1.5226 15 7 7.9063 5.3483 -1.5817 16 14 10.0202 3.5581 -1.5400 17 1 10.2730 2.6850 -2.7144 18 1 10.8811 4.7651 -1.6255 19 1 10.3338 2.8143 -0.2935 20 6 3.9354 -0.4006 -0.0058 21 6 5.3575 -0.8993 -0.0126 22 16 2.4857 -1.4020 -0.0006 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 5.4199 1.7425 0.5626 27 1 4.0694 2.8976 0.4606 28 1 3.6483 1.8671 -3.0086 29 1 2.8203 2.5707 -1.5912 30 1 3.5269 4.0381 -3.8462 31 1 3.3531 4.7578 -2.2137 32 1 5.6471 5.3105 -2.7058 33 1 5.9114 3.7788 -3.6049 34 1 8.6034 6.0206 -1.6347 35 1 5.6780 -1.0969 1.0103 36 1 5.4174 -1.8181 -0.5960 37 1 6.0054 -0.1438 -0.4569 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259970085.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:43 Heat of formation + Delta-G solvation = 23.286645 kcal Electronic energy + Delta-G solvation = -18402.397234 eV Core-core repulsion = 15691.341778 eV Total energy + Delta-G solvation = -2711.055456 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.19596 -39.28968 -35.00067 -34.45318 -32.37288 -31.14559 -30.11725 -27.76348 -26.32086 -25.56104 -23.58560 -21.75068 -21.20312 -19.64950 -18.91675 -18.34130 -17.15821 -16.42438 -16.21152 -15.76606 -15.44434 -14.83214 -14.38565 -14.26717 -14.19902 -14.06972 -13.79420 -13.49511 -13.31729 -12.99116 -12.93738 -12.88587 -12.64450 -12.55954 -12.22431 -12.02060 -11.78130 -11.62391 -11.47457 -10.98291 -10.53096 -10.47431 -10.08385 -9.51109 -8.99323 -8.09060 -6.17874 -0.19826 0.42932 0.76796 1.44718 1.46683 1.54106 1.77503 2.45545 3.14219 3.21058 3.53324 3.93092 4.04081 4.06581 4.17872 4.22070 4.40747 4.55726 4.59778 4.68561 4.70637 4.73076 4.77922 4.83933 4.97048 5.01614 5.05434 5.14340 5.20309 5.29686 5.35070 5.52912 5.61261 5.77588 6.19237 6.43756 6.56223 6.87062 6.92225 7.49813 8.99196 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.026641 B = 0.005654 C = 0.004880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.748116 B = 4950.754239 C = 5736.568575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.032 3.968 3 N -0.498 5.498 4 C 0.050 3.950 5 C 0.139 3.861 6 N -0.521 5.521 7 C 0.047 3.953 8 C -0.138 4.138 9 C -0.096 4.096 10 C 0.211 3.789 11 H -0.023 1.023 12 C -0.509 4.509 13 H 0.058 0.942 14 C 0.012 3.988 15 N -0.925 5.925 16 Si 0.960 3.040 17 H -0.272 1.272 18 H -0.286 1.286 19 H -0.270 1.270 20 C -0.211 4.211 21 C -0.076 4.076 22 S 0.151 5.849 23 H 0.097 0.903 24 H 0.105 0.895 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.020 0.980 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.043 0.957 34 H 0.261 0.739 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.771 -13.529 2.709 18.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.246 4.246 3 N -0.214 5.214 4 C -0.080 4.080 5 C 0.008 3.992 6 N -0.246 5.246 7 C -0.081 4.081 8 C -0.177 4.177 9 C -0.135 4.135 10 C 0.105 3.895 11 H -0.005 1.005 12 C -0.548 4.548 13 H 0.076 0.924 14 C -0.187 4.187 15 N -0.564 5.564 16 Si 0.786 3.214 17 H -0.197 1.197 18 H -0.212 1.212 19 H -0.195 1.195 20 C -0.332 4.332 21 C -0.135 4.135 22 S 0.406 5.594 23 H 0.115 0.885 24 H 0.123 0.877 25 H 0.105 0.895 26 H 0.098 0.902 27 H 0.038 0.962 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.920 -14.349 2.522 19.473 hybrid contribution 1.293 1.843 0.336 2.276 sum -11.627 -12.506 2.858 17.314 Atomic orbital electron populations 1.20587 0.82651 1.05181 1.04911 1.27546 1.03102 0.90810 1.03178 1.66086 1.04725 1.33297 1.17280 1.19886 0.89770 0.94212 1.04108 1.20483 0.94582 0.92539 0.91564 1.63681 1.14203 1.38654 1.08019 1.22734 0.92911 0.95674 0.96828 1.22801 0.96971 0.96757 1.01124 1.22396 0.93066 0.99663 0.98382 1.19963 0.91763 0.85296 0.92485 1.00537 1.21253 0.90724 0.93131 1.49674 0.92372 1.25717 1.03142 0.94828 0.95003 1.70077 1.34152 1.00667 1.51533 0.85581 0.79543 0.77440 0.78868 1.19672 1.21183 1.19532 1.25910 1.01877 0.95481 1.09955 1.20309 0.87899 1.01937 1.03357 1.83379 0.95874 1.11026 1.69129 0.88459 0.87657 0.89525 0.90226 0.96219 0.92305 0.92026 0.90136 0.92595 0.93108 0.93855 0.93053 0.89510 0.89615 0.91081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.15 10.46 71.23 0.75 -0.41 16 2 C 0.03 0.80 7.39 88.52 0.65 1.45 16 3 N -0.50 -16.65 9.16 -179.41 -1.64 -18.29 16 4 C 0.05 1.80 5.26 41.52 0.22 2.01 16 5 C 0.14 5.82 4.67 85.55 0.40 6.22 16 6 N -0.52 -23.70 4.90 -869.51 -4.26 -27.97 16 7 C 0.05 1.91 6.24 86.65 0.54 2.45 16 8 C -0.14 -5.61 6.94 31.77 0.22 -5.39 16 9 C -0.10 -4.76 5.81 31.98 0.19 -4.58 16 10 C 0.21 11.16 2.35 44.64 0.10 11.27 16 11 H -0.02 -1.35 7.70 -2.39 -0.02 -1.37 16 12 C -0.51 -28.61 8.85 25.60 0.23 -28.38 16 13 H 0.06 3.24 7.81 -2.91 -0.02 3.22 16 14 C 0.01 0.65 5.34 84.66 0.45 1.10 16 15 N -0.92 -54.22 12.15 21.45 0.26 -53.96 16 16 Si 0.96 44.10 29.54 68.60 2.03 46.13 16 17 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 18 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 19 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 20 C -0.21 -6.38 6.59 24.64 0.16 -6.22 16 21 C -0.08 -2.07 9.94 71.24 0.71 -1.36 16 22 S 0.15 3.42 23.18 -56.49 -1.31 2.11 16 23 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 25 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.08 3.38 7.44 -2.39 -0.02 3.36 16 27 H 0.02 0.88 7.98 -2.39 -0.02 0.86 16 28 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 29 H 0.06 2.47 5.81 -2.38 -0.01 2.45 16 30 H 0.08 2.82 8.14 -2.38 -0.02 2.80 16 31 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.05 2.71 7.49 -2.39 -0.02 2.69 16 33 H 0.04 2.21 8.05 -2.39 -0.02 2.19 16 34 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 35 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 37 H 0.07 2.37 7.30 -2.39 -0.02 2.36 16 Total: -1.00 -64.98 313.13 0.74 -64.24 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 1.05 Total: 9.57 kcal Atomic # 6 Polarization: -26.44 SS G_CDS: 4.62 Total: -21.83 kcal Atomic # 7 Polarization: -94.57 SS G_CDS: -5.65 Total: -100.22 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 16 Polarization: 3.42 SS G_CDS: -1.31 Total: 2.11 kcal Total: -64.98 0.74 -64.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259970085.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.528 kcal (2) G-P(sol) polarization free energy of solvation -64.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds