Wall clock time and date at job start Mon Mar 30 2020 06:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29026 * 124.91667 * 2 1 4 4 C 1.31779 * 117.12635 * 179.97438 * 3 2 1 5 5 C 1.50698 * 122.75377 * 179.97438 * 4 3 2 6 6 N 1.46901 * 109.47161 * 275.03000 * 5 4 3 7 7 C 1.46843 * 111.00022 * 45.78795 * 6 5 4 8 8 C 1.53039 * 109.52391 * 185.84211 * 7 6 5 9 9 C 1.53124 * 109.27498 * 300.81655 * 8 7 6 10 10 C 1.53126 * 109.15878 * 57.65601 * 9 8 7 11 11 C 1.46854 * 111.00034 * 169.99673 * 6 5 4 12 12 H 1.09001 * 109.46218 * 294.17869 * 11 6 5 13 13 C 1.50703 * 109.46159 * 54.14017 * 11 6 5 14 14 H 1.08001 * 119.99805 * 0.06122 * 13 11 6 15 15 C 1.37872 * 119.99724 * 180.02562 * 13 11 6 16 16 N 1.31512 * 120.00528 * 0.02562 * 15 13 11 17 17 Si 1.86806 * 119.99970 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47023 * 60.00003 * 17 15 13 19 19 H 1.48496 * 109.47337 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47142 * 300.00360 * 17 15 13 21 21 C 1.33645 * 114.50090 * 0.23422 * 4 3 2 22 22 S 1.70979 * 124.91836 * 180.02562 * 2 1 3 23 23 H 1.09004 * 109.47309 * 90.00282 * 1 2 3 24 24 H 1.09002 * 109.47460 * 209.99851 * 1 2 3 25 25 H 1.08995 * 109.47254 * 329.99475 * 1 2 3 26 26 H 1.08995 * 109.47819 * 155.02812 * 5 4 3 27 27 H 1.08998 * 109.46836 * 35.02762 * 5 4 3 28 28 H 1.09001 * 109.45906 * 305.85080 * 7 6 5 29 29 H 1.08994 * 109.46526 * 65.83386 * 7 6 5 30 30 H 1.08997 * 109.50468 * 180.87980 * 8 7 6 31 31 H 1.09004 * 109.50358 * 60.75551 * 8 7 6 32 32 H 1.08998 * 109.52745 * 297.74929 * 9 8 7 33 33 H 1.08999 * 109.52030 * 177.55385 * 9 8 7 34 34 H 1.08994 * 109.50285 * 62.28827 * 10 9 8 35 35 H 1.08998 * 109.50137 * 182.36505 * 10 9 8 36 36 H 0.96998 * 120.00773 * 179.97438 * 16 15 13 37 37 H 1.08001 * 126.03708 * 179.75997 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8794 0.0005 5 6 4.5307 2.0245 0.0000 6 7 4.7571 2.4746 -1.3799 7 6 3.4874 2.6052 -2.1059 8 6 3.7691 2.9329 -3.5740 9 6 4.5627 4.2398 -3.6569 10 6 5.8575 4.0934 -2.8527 11 6 5.5153 3.7321 -1.4056 12 1 4.9143 4.5275 -0.9650 13 6 6.7875 3.5675 -0.6147 14 1 7.0107 2.6228 -0.1414 15 6 7.6668 4.6229 -0.4962 16 7 7.3951 5.7732 -1.0727 17 14 9.2442 4.4188 0.4835 18 1 10.0631 3.3353 -0.1169 19 1 10.0103 5.6906 0.4588 20 1 8.9128 4.0684 1.8880 21 6 3.9354 -0.4006 -0.0040 22 16 2.4856 -1.4020 -0.0006 23 1 -0.3634 -0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 5.4746 1.6955 0.4344 27 1 4.1271 2.8480 0.5892 28 1 2.9349 1.6678 -2.0426 29 1 2.8960 3.4061 -1.6622 30 1 2.8262 3.0452 -4.1092 31 1 4.3488 2.1260 -4.0222 32 1 3.9675 5.0543 -3.2440 33 1 4.8030 4.4545 -4.6982 34 1 6.4700 3.3048 -3.2896 35 1 6.4069 5.0345 -2.8732 36 1 8.0135 6.5158 -0.9890 37 1 4.9545 -0.7580 -0.0081 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259980955.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:40 Heat of formation + Delta-G solvation = 42.976471 kcal Electronic energy + Delta-G solvation = -18520.671841 eV Core-core repulsion = 15810.470200 eV Total energy + Delta-G solvation = -2710.201641 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.89769 -37.69681 -33.38885 -32.88193 -31.49514 -29.40539 -28.31763 -26.23653 -25.01796 -23.20377 -21.36569 -21.01895 -19.40988 -18.55552 -17.28464 -16.46024 -15.39653 -15.04330 -14.65920 -14.18181 -13.79717 -13.51055 -13.36946 -13.21267 -12.76573 -12.67757 -12.28914 -12.13371 -11.96873 -11.65317 -11.12066 -10.94025 -10.78877 -10.72200 -10.46963 -10.13826 -10.00857 -9.56199 -9.48040 -9.29724 -9.08936 -8.82818 -8.43618 -8.37057 -7.10764 -5.99898 -4.05207 0.92772 1.53656 1.90609 3.02968 3.32496 3.37159 3.39547 4.22698 4.41629 5.05013 5.15008 5.31821 5.35408 5.40085 5.49965 5.68171 5.75836 5.79724 5.80479 5.97176 6.23693 6.36688 6.42146 6.48892 6.53300 6.66147 6.67545 6.88499 6.93686 7.15031 7.30825 7.60389 7.73487 7.84859 8.01002 8.20692 8.35701 8.62409 9.00816 9.59848 11.06345 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.022719 B = 0.005921 C = 0.005030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.141300 B = 4727.551959 C = 5565.646314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.042 3.958 3 N -0.463 5.463 4 C 0.083 3.917 5 C 0.139 3.861 6 N -0.527 5.527 7 C 0.064 3.936 8 C -0.111 4.111 9 C -0.122 4.122 10 C -0.103 4.103 11 C 0.220 3.780 12 H 0.000 1.000 13 C -0.508 4.508 14 H 0.062 0.938 15 C 0.062 3.938 16 N -0.891 5.891 17 Si 0.895 3.105 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.278 1.278 21 C -0.238 4.238 22 S 0.080 5.920 23 H 0.083 0.917 24 H 0.077 0.923 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.044 0.956 28 H 0.056 0.944 29 H 0.022 0.978 30 H 0.046 0.954 31 H 0.060 0.940 32 H 0.047 0.953 33 H 0.043 0.957 34 H 0.042 0.958 35 H 0.094 0.906 36 H 0.261 0.739 37 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.899 -11.324 0.410 15.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.237 4.237 3 N -0.178 5.178 4 C -0.047 4.047 5 C 0.009 3.991 6 N -0.253 5.253 7 C -0.065 4.065 8 C -0.149 4.149 9 C -0.160 4.160 10 C -0.141 4.141 11 C 0.115 3.885 12 H 0.018 0.982 13 C -0.547 4.547 14 H 0.080 0.920 15 C -0.140 4.140 16 N -0.530 5.530 17 Si 0.723 3.277 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.204 1.204 21 C -0.378 4.378 22 S 0.333 5.667 23 H 0.101 0.899 24 H 0.095 0.905 25 H 0.105 0.895 26 H 0.113 0.887 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.040 0.960 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.112 0.888 36 H 0.071 0.929 37 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -10.988 -12.029 0.154 16.293 hybrid contribution 1.035 1.237 0.850 1.823 sum -9.953 -10.792 1.004 14.715 Atomic orbital electron populations 1.20385 0.85589 1.03819 1.03619 1.26970 1.01494 0.90902 1.04320 1.66223 1.05018 1.31316 1.15291 1.20605 0.89666 0.95092 0.99371 1.20573 0.94691 0.91536 0.92288 1.62233 1.16964 1.34946 1.11167 1.21955 0.91570 0.98975 0.93967 1.21560 0.98731 0.98587 0.96051 1.21690 0.98923 0.96124 0.99271 1.21624 0.94509 1.02888 0.95115 1.19247 0.92115 0.83672 0.93511 0.98249 1.21133 1.04170 0.97914 1.31468 0.91989 1.24918 0.98147 0.95174 0.95748 1.69873 1.36895 1.02362 1.43890 0.86611 0.83332 0.77284 0.80476 1.20224 1.21365 1.20351 1.26793 1.02528 0.95355 1.13085 1.83728 0.99135 1.13682 1.70205 0.89863 0.90450 0.89487 0.88688 0.93796 0.92521 0.96002 0.93509 0.92159 0.93395 0.93801 0.93868 0.88801 0.92899 0.80512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 10.46 36.00 0.38 -0.32 16 2 C 0.04 0.57 7.39 -13.46 -0.10 0.47 16 3 N -0.46 -7.93 9.08 -8.06 -0.07 -8.00 16 4 C 0.08 1.48 4.79 -84.23 -0.40 1.07 16 5 C 0.14 2.88 5.10 -4.98 -0.03 2.85 16 6 N -0.53 -11.76 4.63 -229.52 -1.06 -12.82 16 7 C 0.06 1.30 4.80 -3.83 -0.02 1.28 16 8 C -0.11 -2.11 6.09 -26.65 -0.16 -2.27 16 9 C -0.12 -2.51 6.00 -26.60 -0.16 -2.67 16 10 C -0.10 -2.50 5.14 -26.65 -0.14 -2.64 16 11 C 0.22 5.60 1.79 -68.87 -0.12 5.48 16 12 H 0.00 0.00 8.14 -51.93 -0.42 -0.42 16 13 C -0.51 -13.73 8.00 -34.44 -0.28 -14.00 16 14 H 0.06 1.64 6.33 -52.49 -0.33 1.31 16 15 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 16 N -0.89 -25.22 11.33 55.43 0.63 -24.59 16 17 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 C -0.24 -3.64 11.12 29.12 0.32 -3.32 16 22 S 0.08 0.98 23.18 -107.50 -2.49 -1.51 16 23 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.10 1.97 6.51 -51.93 -0.34 1.63 16 27 H 0.04 0.97 8.08 -51.93 -0.42 0.56 16 28 H 0.06 1.12 5.77 -51.93 -0.30 0.82 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.09 2.51 6.10 -51.93 -0.32 2.19 16 36 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.18 2.44 8.06 -52.49 -0.42 2.02 16 LS Contribution 305.63 15.07 4.61 4.61 Total: -1.00 -29.15 305.63 -9.70 -38.86 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -5.49 Total: -0.16 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: -0.80 Total: -12.47 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: -0.51 Total: -45.41 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.49 Total: -1.51 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.15 -9.70 -38.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259980955.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.832 kcal (2) G-P(sol) polarization free energy of solvation -29.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds