Wall clock time and date at job start Mon Mar 30 2020 06:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29026 * 124.91667 * 2 1 4 4 C 1.31779 * 117.12635 * 179.97438 * 3 2 1 5 5 C 1.50698 * 122.75377 * 179.97438 * 4 3 2 6 6 N 1.46901 * 109.47161 * 275.03000 * 5 4 3 7 7 C 1.46843 * 111.00022 * 45.78795 * 6 5 4 8 8 C 1.53039 * 109.52391 * 185.84211 * 7 6 5 9 9 C 1.53124 * 109.27498 * 300.81655 * 8 7 6 10 10 C 1.53126 * 109.15878 * 57.65601 * 9 8 7 11 11 C 1.46854 * 111.00034 * 169.99673 * 6 5 4 12 12 H 1.09001 * 109.46218 * 294.17869 * 11 6 5 13 13 C 1.50703 * 109.46159 * 54.14017 * 11 6 5 14 14 H 1.08001 * 119.99805 * 0.06122 * 13 11 6 15 15 C 1.37872 * 119.99724 * 180.02562 * 13 11 6 16 16 N 1.31512 * 120.00528 * 0.02562 * 15 13 11 17 17 Si 1.86806 * 119.99970 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47023 * 60.00003 * 17 15 13 19 19 H 1.48496 * 109.47337 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47142 * 300.00360 * 17 15 13 21 21 C 1.33645 * 114.50090 * 0.23422 * 4 3 2 22 22 S 1.70979 * 124.91836 * 180.02562 * 2 1 3 23 23 H 1.09004 * 109.47309 * 90.00282 * 1 2 3 24 24 H 1.09002 * 109.47460 * 209.99851 * 1 2 3 25 25 H 1.08995 * 109.47254 * 329.99475 * 1 2 3 26 26 H 1.08995 * 109.47819 * 155.02812 * 5 4 3 27 27 H 1.08998 * 109.46836 * 35.02762 * 5 4 3 28 28 H 1.09001 * 109.45906 * 305.85080 * 7 6 5 29 29 H 1.08994 * 109.46526 * 65.83386 * 7 6 5 30 30 H 1.08997 * 109.50468 * 180.87980 * 8 7 6 31 31 H 1.09004 * 109.50358 * 60.75551 * 8 7 6 32 32 H 1.08998 * 109.52745 * 297.74929 * 9 8 7 33 33 H 1.08999 * 109.52030 * 177.55385 * 9 8 7 34 34 H 1.08994 * 109.50285 * 62.28827 * 10 9 8 35 35 H 1.08998 * 109.50137 * 182.36505 * 10 9 8 36 36 H 0.96998 * 120.00773 * 179.97438 * 16 15 13 37 37 H 1.08001 * 126.03708 * 179.75997 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8794 0.0005 5 6 4.5307 2.0245 0.0000 6 7 4.7571 2.4746 -1.3799 7 6 3.4874 2.6052 -2.1059 8 6 3.7691 2.9329 -3.5740 9 6 4.5627 4.2398 -3.6569 10 6 5.8575 4.0934 -2.8527 11 6 5.5153 3.7321 -1.4056 12 1 4.9143 4.5275 -0.9650 13 6 6.7875 3.5675 -0.6147 14 1 7.0107 2.6228 -0.1414 15 6 7.6668 4.6229 -0.4962 16 7 7.3951 5.7732 -1.0727 17 14 9.2442 4.4188 0.4835 18 1 10.0631 3.3353 -0.1169 19 1 10.0103 5.6906 0.4588 20 1 8.9128 4.0684 1.8880 21 6 3.9354 -0.4006 -0.0040 22 16 2.4856 -1.4020 -0.0006 23 1 -0.3634 -0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 5.4746 1.6955 0.4344 27 1 4.1271 2.8480 0.5892 28 1 2.9349 1.6678 -2.0426 29 1 2.8960 3.4061 -1.6622 30 1 2.8262 3.0452 -4.1092 31 1 4.3488 2.1260 -4.0222 32 1 3.9675 5.0543 -3.2440 33 1 4.8030 4.4545 -4.6982 34 1 6.4700 3.3048 -3.2896 35 1 6.4069 5.0345 -2.8732 36 1 8.0135 6.5158 -0.9890 37 1 4.9545 -0.7580 -0.0081 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259980955.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:39 Heat of formation + Delta-G solvation = 24.656877 kcal Electronic energy + Delta-G solvation = -18521.466239 eV Core-core repulsion = 15810.470200 eV Total energy + Delta-G solvation = -2710.996039 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.19560 -39.38637 -34.97628 -34.80082 -32.75357 -31.31216 -29.43739 -27.80486 -26.95957 -24.61569 -23.07124 -22.61314 -20.62596 -20.34037 -18.57857 -18.38498 -17.17098 -16.41273 -16.18551 -15.52797 -15.43237 -15.12182 -14.96934 -14.53227 -14.22184 -14.08255 -13.88574 -13.49484 -13.14672 -13.02972 -12.80347 -12.73956 -12.61271 -12.33365 -12.18115 -11.99077 -11.85311 -11.42824 -11.05074 -10.76207 -10.54034 -10.43243 -10.28030 -9.63277 -8.96005 -8.10050 -6.22995 -0.18300 0.48378 0.77514 1.42591 1.44376 1.51777 1.77620 2.42517 3.11559 3.19794 3.46688 4.00845 4.09703 4.14863 4.23547 4.32771 4.44410 4.58524 4.63998 4.70074 4.70968 4.81810 4.86845 4.91854 5.00963 5.06092 5.11794 5.19701 5.26016 5.29241 5.43931 5.62506 5.74108 5.78019 6.25811 6.36786 6.69322 6.87548 6.90436 7.46013 8.95370 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.022719 B = 0.005921 C = 0.005030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.141300 B = 4727.551959 C = 5565.646314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.036 3.964 3 N -0.504 5.504 4 C 0.059 3.941 5 C 0.146 3.854 6 N -0.528 5.528 7 C 0.070 3.930 8 C -0.105 4.105 9 C -0.117 4.117 10 C -0.097 4.097 11 C 0.226 3.774 12 H -0.046 1.046 13 C -0.524 4.524 14 H 0.061 0.939 15 C 0.014 3.986 16 N -0.919 5.919 17 Si 0.960 3.040 18 H -0.269 1.269 19 H -0.285 1.285 20 H -0.272 1.272 21 C -0.251 4.251 22 S 0.163 5.837 23 H 0.099 0.901 24 H 0.107 0.893 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.013 0.987 28 H 0.069 0.931 29 H 0.002 0.998 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.038 0.962 33 H 0.069 0.931 34 H 0.035 0.965 35 H 0.065 0.935 36 H 0.262 0.738 37 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.953 -13.879 -0.023 18.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.242 4.242 3 N -0.221 5.221 4 C -0.071 4.071 5 C 0.015 3.985 6 N -0.253 5.253 7 C -0.059 4.059 8 C -0.143 4.143 9 C -0.154 4.154 10 C -0.136 4.136 11 C 0.120 3.880 12 H -0.029 1.029 13 C -0.563 4.563 14 H 0.080 0.920 15 C -0.185 4.185 16 N -0.559 5.559 17 Si 0.785 3.215 18 H -0.194 1.194 19 H -0.210 1.210 20 H -0.198 1.198 21 C -0.391 4.391 22 S 0.417 5.583 23 H 0.117 0.883 24 H 0.125 0.875 25 H 0.103 0.897 26 H 0.104 0.896 27 H 0.031 0.969 28 H 0.087 0.913 29 H 0.020 0.980 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.057 0.943 33 H 0.087 0.913 34 H 0.054 0.946 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -12.063 -14.614 -0.279 18.952 hybrid contribution 1.265 1.939 1.023 2.532 sum -10.798 -12.675 0.744 16.667 Atomic orbital electron populations 1.20609 0.82690 1.05193 1.05030 1.27711 1.03299 0.90987 1.02232 1.66176 1.04863 1.33441 1.17600 1.20112 0.89862 0.94752 1.02405 1.20346 0.95245 0.91992 0.90872 1.62200 1.18010 1.32684 1.12426 1.21962 0.90428 0.98865 0.94597 1.21550 1.00104 0.97462 0.95144 1.21614 0.96965 0.97021 0.99843 1.21441 0.96156 1.00936 0.95038 1.19040 0.91409 0.83800 0.93795 1.02864 1.21421 1.04918 0.98047 1.31866 0.92042 1.25715 1.01307 0.94818 0.96698 1.70021 1.37938 1.02995 1.44920 0.85585 0.79387 0.77378 0.79127 1.19414 1.21005 1.19776 1.27009 1.04758 0.95538 1.11785 1.83410 0.95754 1.10913 1.68217 0.88268 0.87474 0.89735 0.89613 0.96883 0.91255 0.98013 0.90175 0.91600 0.94334 0.91283 0.94574 0.91663 0.92936 0.79663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.17 10.46 71.23 0.75 -0.43 16 2 C 0.04 0.89 7.39 88.52 0.65 1.54 16 3 N -0.50 -17.02 9.08 -179.41 -1.63 -18.65 16 4 C 0.06 2.12 4.79 41.52 0.20 2.31 16 5 C 0.15 6.32 5.10 85.56 0.44 6.76 16 6 N -0.53 -24.32 4.63 -880.06 -4.07 -28.40 16 7 C 0.07 2.86 4.80 86.33 0.41 3.28 16 8 C -0.10 -3.82 6.09 30.65 0.19 -3.63 16 9 C -0.12 -4.78 6.00 30.68 0.18 -4.59 16 10 C -0.10 -4.87 5.14 30.65 0.16 -4.71 16 11 C 0.23 12.09 1.79 44.19 0.08 12.17 16 12 H -0.05 -2.82 8.14 -2.39 -0.02 -2.84 16 13 C -0.52 -29.41 8.00 25.60 0.20 -29.21 16 14 H 0.06 3.37 6.33 -2.91 -0.02 3.35 16 15 C 0.01 0.76 5.30 84.65 0.45 1.20 16 16 N -0.92 -53.89 11.33 21.45 0.24 -53.65 16 17 Si 0.96 44.08 29.54 68.60 2.03 46.10 16 18 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 19 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 21 C -0.25 -7.34 11.12 66.78 0.74 -6.59 16 22 S 0.16 3.49 23.18 -56.49 -1.31 2.18 16 23 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 24 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.09 3.75 6.51 -2.39 -0.02 3.73 16 27 H 0.01 0.63 8.08 -2.39 -0.02 0.61 16 28 H 0.07 2.69 5.77 -2.39 -0.01 2.67 16 29 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 30 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 32 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.06 3.64 6.10 -2.39 -0.01 3.62 16 36 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 37 H 0.19 4.90 8.06 -2.91 -0.02 4.88 16 Total: -1.00 -65.79 305.63 0.76 -65.03 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: 1.05 Total: 9.28 kcal Atomic # 6 Polarization: -26.36 SS G_CDS: 4.45 Total: -21.91 kcal Atomic # 7 Polarization: -95.23 SS G_CDS: -5.46 Total: -100.69 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: 3.49 SS G_CDS: -1.31 Total: 2.18 kcal Total: -65.79 0.76 -65.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259980955.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.687 kcal (2) G-P(sol) polarization free energy of solvation -65.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds