Wall clock time and date at job start Mon Mar 30 2020 06:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29023 * 124.91950 * 2 1 4 4 C 1.31783 * 117.12647 * 179.67943 * 3 2 1 5 5 C 1.50695 * 122.75271 * 180.33032 * 4 3 2 6 6 N 1.46900 * 109.47462 * 275.19814 * 5 4 3 7 7 C 1.46849 * 110.99579 * 66.04476 * 6 5 4 8 8 C 1.53038 * 109.52440 * 174.16391 * 7 6 5 9 9 C 1.53120 * 109.27794 * 59.17827 * 8 7 6 10 10 C 1.53121 * 109.16011 * 302.34594 * 9 8 7 11 11 C 1.46845 * 111.00128 * 301.84046 * 6 5 4 12 12 H 1.08995 * 109.46434 * 65.81294 * 11 6 5 13 13 C 1.50700 * 109.45827 * 305.85099 * 11 6 5 14 14 H 1.07999 * 120.00256 * 359.97438 * 13 11 6 15 15 C 1.37882 * 120.00100 * 180.02562 * 13 11 6 16 16 N 1.31508 * 120.00005 * 179.97438 * 15 13 11 17 17 Si 1.86807 * 119.99603 * 359.97438 * 15 13 11 18 18 H 1.48499 * 109.46884 * 90.00280 * 17 15 13 19 19 H 1.48495 * 109.46799 * 209.99906 * 17 15 13 20 20 H 1.48495 * 109.47209 * 329.99998 * 17 15 13 21 21 C 1.33641 * 114.49959 * 0.51682 * 4 3 2 22 22 S 1.70983 * 124.91280 * 179.97438 * 2 1 3 23 23 H 1.08999 * 109.47092 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46891 * 300.02028 * 1 2 3 25 25 H 1.09000 * 109.46392 * 60.01890 * 1 2 3 26 26 H 1.09002 * 109.47004 * 35.20275 * 5 4 3 27 27 H 1.09008 * 109.47389 * 155.19742 * 5 4 3 28 28 H 1.08999 * 109.46561 * 294.17613 * 7 6 5 29 29 H 1.09004 * 109.46489 * 54.14618 * 7 6 5 30 30 H 1.08996 * 109.50844 * 179.12082 * 8 7 6 31 31 H 1.09004 * 109.50082 * 299.23887 * 8 7 6 32 32 H 1.08992 * 109.52247 * 62.24996 * 9 8 7 33 33 H 1.09003 * 109.52257 * 182.44294 * 9 8 7 34 34 H 1.08998 * 109.50429 * 177.59454 * 10 9 8 35 35 H 1.09001 * 109.50821 * 297.71631 * 10 9 8 36 36 H 0.97002 * 119.99747 * 179.97438 * 16 15 13 37 37 H 1.08002 * 126.04199 * 179.79531 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0579 0.0000 4 6 3.5512 0.8793 0.0066 5 6 4.5308 2.0244 0.0147 6 7 4.7612 2.4816 -1.3622 7 6 3.5420 3.0687 -1.9326 8 6 3.8555 3.6632 -3.3075 9 6 4.3909 2.5603 -4.2250 10 6 5.6322 1.9326 -3.5849 11 6 5.2671 1.3883 -2.2020 12 1 4.4978 0.6231 -2.3044 13 6 6.4907 0.7870 -1.5600 14 1 6.8560 1.1785 -0.6220 15 6 7.1446 -0.2622 -2.1705 16 7 8.2127 -0.7865 -1.6104 17 14 6.5132 -0.9387 -3.7932 18 1 7.1553 -0.2101 -4.9166 19 1 6.8417 -2.3838 -3.8883 20 1 5.0407 -0.7601 -3.8646 21 6 3.9354 -0.4007 0.0015 22 16 2.4856 -1.4021 0.0006 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5142 0.8898 25 1 -0.3632 0.5136 -0.8902 26 1 4.1257 2.8448 0.6070 27 1 5.4736 1.6930 0.4501 28 1 2.7807 2.2956 -2.0363 29 1 3.1741 3.8543 -1.2726 30 1 2.9471 4.0851 -3.7374 31 1 4.6068 4.4460 -3.2028 32 1 3.6255 1.7964 -4.3611 33 1 4.6563 2.9878 -5.1919 34 1 5.9930 1.1181 -4.2129 35 1 6.4114 2.6882 -3.4845 36 1 8.6725 -1.5249 -2.0398 37 1 4.9546 -0.7583 0.0022 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259980958.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:42 Heat of formation + Delta-G solvation = 48.336863 kcal Electronic energy + Delta-G solvation = -19155.041559 eV Core-core repulsion = 16445.072361 eV Total energy + Delta-G solvation = -2709.969197 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.82037 -37.85036 -33.51949 -32.85130 -31.37483 -30.26597 -28.00604 -26.44273 -24.91263 -23.13132 -21.83673 -20.88928 -19.29498 -18.77882 -17.08758 -16.70490 -15.56468 -14.88222 -14.69533 -14.24647 -13.86920 -13.61965 -13.42440 -13.21879 -13.03304 -12.75101 -12.42239 -12.07615 -11.97133 -11.80488 -11.35749 -11.20031 -10.85012 -10.60268 -10.51369 -10.30287 -9.96770 -9.92491 -9.29715 -9.27007 -8.96458 -8.90202 -8.58657 -8.20943 -7.39938 -6.13534 -4.11413 1.20773 1.80492 2.19479 3.22032 3.26748 3.33671 3.34938 4.34469 4.42455 4.86765 5.18702 5.23821 5.46776 5.48146 5.50004 5.56158 5.64994 5.81521 5.87225 6.10609 6.15612 6.18060 6.23284 6.37256 6.39434 6.48007 6.53378 6.64059 6.71351 6.74602 6.83151 6.92827 7.30386 7.58890 7.93415 8.06465 8.22402 8.61679 8.92369 9.49364 10.98248 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.016791 B = 0.009623 C = 0.007552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.167394 B = 2908.855320 C = 3706.905206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.026 3.974 3 N -0.462 5.462 4 C 0.033 3.967 5 C 0.140 3.860 6 N -0.511 5.511 7 C 0.057 3.943 8 C -0.111 4.111 9 C -0.125 4.125 10 C -0.118 4.118 11 C 0.187 3.813 12 H 0.000 1.000 13 C -0.504 4.504 14 H 0.085 0.915 15 C 0.075 3.925 16 N -0.896 5.896 17 Si 0.875 3.125 18 H -0.277 1.277 19 H -0.297 1.297 20 H -0.268 1.268 21 C -0.201 4.201 22 S 0.070 5.930 23 H 0.073 0.927 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.104 0.896 28 H 0.030 0.970 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.047 0.953 33 H 0.051 0.949 34 H 0.047 0.953 35 H 0.069 0.931 36 H 0.264 0.736 37 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.890 1.746 1.254 13.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.253 4.253 3 N -0.178 5.178 4 C -0.098 4.098 5 C 0.009 3.991 6 N -0.233 5.233 7 C -0.071 4.071 8 C -0.149 4.149 9 C -0.163 4.163 10 C -0.156 4.156 11 C 0.080 3.920 12 H 0.018 0.982 13 C -0.542 4.542 14 H 0.102 0.898 15 C -0.127 4.127 16 N -0.534 5.534 17 Si 0.706 3.294 18 H -0.204 1.204 19 H -0.225 1.225 20 H -0.193 1.193 21 C -0.341 4.341 22 S 0.322 5.678 23 H 0.092 0.908 24 H 0.100 0.900 25 H 0.099 0.901 26 H 0.089 0.911 27 H 0.122 0.878 28 H 0.048 0.952 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -12.835 1.438 1.235 12.974 hybrid contribution -0.179 -0.563 -1.189 1.328 sum -13.014 0.875 0.046 13.043 Atomic orbital electron populations 1.20289 0.85936 1.02813 1.03740 1.26856 1.01205 0.91254 1.05985 1.66137 1.05011 1.31377 1.15278 1.21312 0.89946 0.96173 1.02398 1.20868 0.95385 0.91012 0.91840 1.62209 1.27073 1.32564 1.01454 1.22011 0.91861 0.98119 0.95146 1.21534 1.00015 0.98182 0.95153 1.21662 0.98782 0.97831 0.97977 1.21992 0.96537 0.99619 0.97416 1.19676 0.95445 0.87445 0.89479 0.98217 1.21005 1.09267 1.15056 1.08860 0.89752 1.24862 0.94572 0.96375 0.96933 1.69870 1.18851 1.25348 1.39368 0.87032 0.79955 0.77221 0.85232 1.20421 1.22468 1.19342 1.27311 1.02868 0.95218 1.08680 1.83800 0.99936 1.14182 1.69846 0.90830 0.90009 0.90102 0.91115 0.87782 0.95157 0.91909 0.92847 0.91465 0.93432 0.93069 0.93516 0.91223 0.92595 0.79104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.74 10.47 36.01 0.38 -0.37 16 2 C 0.03 0.40 7.39 -13.46 -0.10 0.30 16 3 N -0.46 -8.41 9.45 -8.06 -0.08 -8.48 16 4 C 0.03 0.65 4.54 -84.23 -0.38 0.26 16 5 C 0.14 2.75 5.42 -4.98 -0.03 2.72 16 6 N -0.51 -10.66 4.69 -229.51 -1.08 -11.73 16 7 C 0.06 1.06 5.03 -3.83 -0.02 1.04 16 8 C -0.11 -1.88 6.09 -26.65 -0.16 -2.04 16 9 C -0.12 -2.33 6.00 -26.61 -0.16 -2.49 16 10 C -0.12 -2.62 4.84 -26.65 -0.13 -2.75 16 11 C 0.19 4.35 0.81 -68.88 -0.06 4.30 16 12 H 0.00 0.01 5.75 -51.93 -0.30 -0.29 16 13 C -0.50 -13.22 7.22 -34.44 -0.25 -13.47 16 14 H 0.08 2.38 6.51 -52.49 -0.34 2.04 16 15 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 16 N -0.90 -26.08 13.96 55.43 0.77 -25.31 16 17 Si 0.87 21.67 24.36 -169.99 -4.14 17.53 16 18 H -0.28 -6.77 6.87 56.52 0.39 -6.38 16 19 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 20 H -0.27 -6.57 6.53 56.52 0.37 -6.20 16 21 C -0.20 -3.93 9.53 29.12 0.28 -3.65 16 22 S 0.07 1.12 23.17 -107.50 -2.49 -1.37 16 23 H 0.07 0.66 8.12 -51.93 -0.42 0.23 16 24 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.07 1.27 8.06 -51.93 -0.42 0.85 16 27 H 0.10 2.16 6.16 -51.92 -0.32 1.84 16 28 H 0.03 0.61 6.77 -51.93 -0.35 0.25 16 29 H 0.06 1.08 8.06 -51.93 -0.42 0.66 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.05 1.09 3.28 -51.93 -0.17 0.92 16 35 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.19 4.08 7.26 -52.49 -0.38 3.70 16 LS Contribution 294.23 15.07 4.43 4.43 Total: -1.00 -29.02 294.23 -8.57 -37.59 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -5.26 Total: 1.53 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: -0.73 Total: -14.19 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: -0.38 Total: -45.52 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.14 Total: 17.53 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.49 Total: -1.37 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.02 -8.57 -37.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259980958.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.924 kcal (2) G-P(sol) polarization free energy of solvation -29.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds