Wall clock time and date at job start Mon Mar 30 2020 06:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29023 * 124.91950 * 2 1 4 4 C 1.31783 * 117.12647 * 179.67943 * 3 2 1 5 5 C 1.50695 * 122.75271 * 180.33032 * 4 3 2 6 6 N 1.46900 * 109.47462 * 275.19814 * 5 4 3 7 7 C 1.46849 * 110.99579 * 66.04476 * 6 5 4 8 8 C 1.53038 * 109.52440 * 174.16391 * 7 6 5 9 9 C 1.53120 * 109.27794 * 59.17827 * 8 7 6 10 10 C 1.53121 * 109.16011 * 302.34594 * 9 8 7 11 11 C 1.46845 * 111.00128 * 301.84046 * 6 5 4 12 12 H 1.08995 * 109.46434 * 65.81294 * 11 6 5 13 13 C 1.50700 * 109.45827 * 305.85099 * 11 6 5 14 14 H 1.07999 * 120.00256 * 359.97438 * 13 11 6 15 15 C 1.37882 * 120.00100 * 180.02562 * 13 11 6 16 16 N 1.31508 * 120.00005 * 179.97438 * 15 13 11 17 17 Si 1.86807 * 119.99603 * 359.97438 * 15 13 11 18 18 H 1.48499 * 109.46884 * 90.00280 * 17 15 13 19 19 H 1.48495 * 109.46799 * 209.99906 * 17 15 13 20 20 H 1.48495 * 109.47209 * 329.99998 * 17 15 13 21 21 C 1.33641 * 114.49959 * 0.51682 * 4 3 2 22 22 S 1.70983 * 124.91280 * 179.97438 * 2 1 3 23 23 H 1.08999 * 109.47092 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46891 * 300.02028 * 1 2 3 25 25 H 1.09000 * 109.46392 * 60.01890 * 1 2 3 26 26 H 1.09002 * 109.47004 * 35.20275 * 5 4 3 27 27 H 1.09008 * 109.47389 * 155.19742 * 5 4 3 28 28 H 1.08999 * 109.46561 * 294.17613 * 7 6 5 29 29 H 1.09004 * 109.46489 * 54.14618 * 7 6 5 30 30 H 1.08996 * 109.50844 * 179.12082 * 8 7 6 31 31 H 1.09004 * 109.50082 * 299.23887 * 8 7 6 32 32 H 1.08992 * 109.52247 * 62.24996 * 9 8 7 33 33 H 1.09003 * 109.52257 * 182.44294 * 9 8 7 34 34 H 1.08998 * 109.50429 * 177.59454 * 10 9 8 35 35 H 1.09001 * 109.50821 * 297.71631 * 10 9 8 36 36 H 0.97002 * 119.99747 * 179.97438 * 16 15 13 37 37 H 1.08002 * 126.04199 * 179.79531 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0579 0.0000 4 6 3.5512 0.8793 0.0066 5 6 4.5308 2.0244 0.0147 6 7 4.7612 2.4816 -1.3622 7 6 3.5420 3.0687 -1.9326 8 6 3.8555 3.6632 -3.3075 9 6 4.3909 2.5603 -4.2250 10 6 5.6322 1.9326 -3.5849 11 6 5.2671 1.3883 -2.2020 12 1 4.4978 0.6231 -2.3044 13 6 6.4907 0.7870 -1.5600 14 1 6.8560 1.1785 -0.6220 15 6 7.1446 -0.2622 -2.1705 16 7 8.2127 -0.7865 -1.6104 17 14 6.5132 -0.9387 -3.7932 18 1 7.1553 -0.2101 -4.9166 19 1 6.8417 -2.3838 -3.8883 20 1 5.0407 -0.7601 -3.8646 21 6 3.9354 -0.4007 0.0015 22 16 2.4856 -1.4021 0.0006 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5142 0.8898 25 1 -0.3632 0.5136 -0.8902 26 1 4.1257 2.8448 0.6070 27 1 5.4736 1.6930 0.4501 28 1 2.7807 2.2956 -2.0363 29 1 3.1741 3.8543 -1.2726 30 1 2.9471 4.0851 -3.7374 31 1 4.6068 4.4460 -3.2028 32 1 3.6255 1.7964 -4.3611 33 1 4.6563 2.9878 -5.1919 34 1 5.9930 1.1181 -4.2129 35 1 6.4114 2.6882 -3.4845 36 1 8.6725 -1.5249 -2.0398 37 1 4.9546 -0.7583 0.0022 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259980958.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:41 Heat of formation + Delta-G solvation = 28.595623 kcal Electronic energy + Delta-G solvation = -19155.897603 eV Core-core repulsion = 16445.072361 eV Total energy + Delta-G solvation = -2710.825242 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.29343 -39.40477 -35.00036 -34.85644 -32.64823 -32.06721 -29.27506 -28.05161 -26.75347 -24.56963 -23.39992 -22.50728 -20.73419 -20.34986 -18.88090 -18.35804 -17.25094 -16.36781 -16.24610 -15.87386 -15.47040 -15.16120 -14.87926 -14.86332 -14.38701 -14.18632 -14.03759 -13.55285 -13.24642 -13.03085 -12.94312 -12.85253 -12.52418 -12.45920 -12.17335 -11.91562 -11.73777 -11.56239 -11.11146 -10.80677 -10.66007 -10.59781 -10.26985 -9.62229 -9.06720 -8.28968 -6.28437 -0.15858 0.47736 0.80999 1.22485 1.28391 1.36135 1.83983 2.27383 3.04201 3.16267 3.32908 3.99175 4.04477 4.10167 4.18159 4.27965 4.51332 4.56525 4.59246 4.66334 4.69680 4.77732 4.80192 4.87142 4.91317 5.01622 5.04949 5.06514 5.10803 5.21892 5.34726 5.37195 5.49512 5.70357 6.03859 6.33880 6.68225 6.76876 6.84775 7.35062 8.86293 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.016791 B = 0.009623 C = 0.007552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.167394 B = 2908.855320 C = 3706.905206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.038 3.962 3 N -0.483 5.483 4 C 0.035 3.965 5 C 0.140 3.860 6 N -0.519 5.519 7 C 0.059 3.941 8 C -0.106 4.106 9 C -0.121 4.121 10 C -0.122 4.122 11 C 0.199 3.801 12 H -0.018 1.018 13 C -0.490 4.490 14 H 0.052 0.948 15 C 0.028 3.972 16 N -0.940 5.940 17 Si 0.927 3.073 18 H -0.268 1.268 19 H -0.299 1.299 20 H -0.263 1.263 21 C -0.245 4.245 22 S 0.111 5.889 23 H 0.099 0.901 24 H 0.100 0.900 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.019 0.981 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.044 0.956 33 H 0.077 0.923 34 H 0.034 0.966 35 H 0.062 0.938 36 H 0.264 0.736 37 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.086 2.589 0.035 16.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.240 4.240 3 N -0.199 5.199 4 C -0.097 4.097 5 C 0.009 3.991 6 N -0.242 5.242 7 C -0.069 4.069 8 C -0.144 4.144 9 C -0.158 4.158 10 C -0.160 4.160 11 C 0.091 3.909 12 H -0.001 1.001 13 C -0.529 4.529 14 H 0.070 0.930 15 C -0.170 4.170 16 N -0.580 5.580 17 Si 0.756 3.244 18 H -0.194 1.194 19 H -0.227 1.227 20 H -0.188 1.188 21 C -0.385 4.385 22 S 0.365 5.635 23 H 0.117 0.883 24 H 0.118 0.882 25 H 0.111 0.889 26 H 0.107 0.893 27 H 0.097 0.903 28 H 0.037 0.963 29 H 0.098 0.902 30 H 0.106 0.894 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.096 0.904 34 H 0.052 0.948 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -16.046 2.289 0.014 16.209 hybrid contribution 0.732 -0.815 -0.684 1.291 sum -15.314 1.474 -0.669 15.400 Atomic orbital electron populations 1.20560 0.82135 1.05024 1.05116 1.27810 1.03203 0.90440 1.02559 1.66186 1.04186 1.32305 1.17248 1.21168 0.90740 0.95683 1.02101 1.20747 0.94726 0.92020 0.91565 1.62188 1.28900 1.31526 1.01563 1.22089 0.90261 0.98000 0.96543 1.21551 1.01643 0.97496 0.93679 1.21639 0.96664 0.98206 0.99321 1.21949 0.98356 0.99196 0.96528 1.19392 0.93281 0.87760 0.90472 1.00079 1.21144 1.09783 1.14478 1.07476 0.93008 1.25461 0.94808 0.96916 0.99836 1.69992 1.20573 1.26421 1.41063 0.86185 0.79664 0.76454 0.82132 1.19431 1.22657 1.18813 1.27070 1.03252 0.96668 1.11495 1.83551 0.97536 1.13234 1.69206 0.88270 0.88175 0.88873 0.89318 0.90348 0.96296 0.90244 0.89439 0.91038 0.93756 0.90407 0.94814 0.91967 0.92671 0.82274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.22 10.47 71.24 0.75 -0.47 16 2 C 0.04 1.11 7.39 88.52 0.65 1.77 16 3 N -0.48 -16.84 9.45 -179.40 -1.70 -18.54 16 4 C 0.04 1.38 4.54 41.52 0.19 1.57 16 5 C 0.14 5.64 5.42 85.56 0.46 6.11 16 6 N -0.52 -21.61 4.69 -880.05 -4.12 -25.73 16 7 C 0.06 2.06 5.03 86.33 0.43 2.49 16 8 C -0.11 -3.22 6.09 30.65 0.19 -3.04 16 9 C -0.12 -4.15 6.00 30.67 0.18 -3.97 16 10 C -0.12 -5.32 4.84 30.65 0.15 -5.17 16 11 C 0.20 9.35 0.81 44.19 0.04 9.38 16 12 H -0.02 -0.92 5.75 -2.39 -0.01 -0.94 16 13 C -0.49 -26.88 7.22 25.60 0.18 -26.70 16 14 H 0.05 3.13 6.51 -2.91 -0.02 3.11 16 15 C 0.03 1.58 5.45 84.66 0.46 2.04 16 16 N -0.94 -57.09 13.96 21.45 0.30 -56.79 16 17 Si 0.93 45.45 24.36 68.60 1.67 47.12 16 18 H -0.27 -12.65 6.87 99.48 0.68 -11.96 16 19 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 20 H -0.26 -12.57 6.53 99.48 0.65 -11.92 16 21 C -0.24 -9.88 9.53 66.78 0.64 -9.25 16 22 S 0.11 3.43 23.17 -56.49 -1.31 2.12 16 23 H 0.10 1.30 8.12 -2.39 -0.02 1.28 16 24 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.09 3.17 8.06 -2.39 -0.02 3.15 16 27 H 0.08 3.50 6.16 -2.38 -0.01 3.48 16 28 H 0.02 0.71 6.77 -2.39 -0.02 0.69 16 29 H 0.08 2.51 8.06 -2.39 -0.02 2.49 16 30 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.03 1.54 3.28 -2.39 -0.01 1.53 16 35 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 36 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 37 H 0.16 7.39 7.26 -2.91 -0.02 7.37 16 Total: -1.00 -64.58 294.23 0.15 -64.43 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 0.98 Total: 12.62 kcal Atomic # 6 Polarization: -29.56 SS G_CDS: 4.32 Total: -25.24 kcal Atomic # 7 Polarization: -95.54 SS G_CDS: -5.52 Total: -101.06 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.67 Total: 47.12 kcal Atomic # 16 Polarization: 3.43 SS G_CDS: -1.31 Total: 2.12 kcal Total: -64.58 0.15 -64.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259980958.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.028 kcal (2) G-P(sol) polarization free energy of solvation -64.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds