Wall clock time and date at job start Mon Mar 30 2020 06:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29029 * 124.91449 * 2 1 4 4 C 1.31779 * 117.12276 * 180.22431 * 3 2 1 5 5 C 1.50703 * 122.75206 * 179.74707 * 4 3 2 6 6 N 1.46898 * 109.47073 * 95.07386 * 5 4 3 7 7 C 1.48535 * 110.99977 * 281.86149 * 6 5 4 8 8 C 1.54936 * 103.23009 * 200.27860 * 7 6 5 9 9 C 1.54602 * 102.91744 * 37.41130 * 8 7 6 10 10 H 1.08995 * 110.39328 * 97.00563 * 9 8 7 11 11 C 1.50707 * 110.30576 * 219.12764 * 9 8 7 12 12 H 1.08002 * 119.99649 * 115.71492 * 11 9 8 13 13 C 1.37870 * 120.00095 * 295.71668 * 11 9 8 14 14 N 1.31515 * 120.00113 * 359.97438 * 13 11 9 15 15 Si 1.86804 * 120.00052 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46818 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47053 * 239.99976 * 15 13 11 18 18 H 1.48504 * 109.47002 * 120.00076 * 15 13 11 19 19 C 1.47892 * 111.00107 * 164.46347 * 6 5 4 20 20 C 1.33645 * 114.49981 * 359.48677 * 4 3 2 21 21 C 1.50701 * 126.03710 * 180.26939 * 20 4 3 22 22 S 1.70976 * 124.91754 * 179.68915 * 2 1 3 23 23 H 1.08997 * 109.46923 * 180.33246 * 1 2 3 24 24 H 1.09007 * 109.47212 * 300.33263 * 1 2 3 25 25 H 1.09000 * 109.47094 * 60.32720 * 1 2 3 26 26 H 1.08999 * 109.46771 * 335.07537 * 5 4 3 27 27 H 1.08998 * 109.47260 * 215.07663 * 5 4 3 28 28 H 1.09009 * 110.66350 * 318.71260 * 7 6 5 29 29 H 1.08996 * 110.67346 * 81.84026 * 7 6 5 30 30 H 1.08996 * 110.72524 * 279.05470 * 8 7 6 31 31 H 1.08998 * 110.72753 * 155.76366 * 8 7 6 32 32 H 0.97001 * 119.99948 * 0.02562 * 14 13 11 33 33 H 1.08996 * 109.92008 * 26.49164 * 19 6 5 34 34 H 1.09008 * 110.08133 * 265.28406 * 19 6 5 35 35 H 1.09001 * 109.47294 * 94.74097 * 21 20 4 36 36 H 1.08999 * 109.46724 * 214.74614 * 21 20 4 37 37 H 1.08999 * 109.46892 * 334.73874 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8794 -0.0046 5 6 4.5307 2.0246 -0.0108 6 7 4.9474 2.3200 1.3666 7 6 3.9036 3.0965 2.0834 8 6 4.6859 3.7483 3.2512 9 6 6.0462 4.0965 2.6041 10 1 6.0599 5.1392 2.2868 11 6 7.1695 3.8307 3.5729 12 1 7.9046 3.0708 3.3521 13 6 7.2589 4.5574 4.7411 14 7 6.3641 5.4830 5.0099 15 14 8.6517 4.2284 5.9417 16 1 9.5184 3.1462 5.4096 17 1 8.0886 3.8122 7.2512 18 1 9.4551 5.4648 6.1187 19 6 6.1612 3.1647 1.3835 20 6 3.9354 -0.4006 0.0022 21 6 5.3575 -0.8994 0.0049 22 16 2.4857 -1.4019 0.0076 23 1 -0.3633 -1.0276 0.0060 24 1 -0.3634 0.5190 0.8870 25 1 -0.3633 0.5087 -0.8929 26 1 4.0570 2.9055 -0.4439 27 1 5.4038 1.7528 -0.6041 28 1 3.4772 3.8600 1.4326 29 1 3.1251 2.4352 2.4637 30 1 4.8180 3.0405 4.0695 31 1 4.1815 4.6503 3.5976 32 1 5.6410 5.6541 4.3863 33 1 6.2153 3.7555 0.4692 34 1 7.0502 2.5406 1.4754 35 1 5.6722 -1.0944 1.0302 36 1 5.4208 -1.8195 -0.5759 37 1 6.0079 -0.1449 -0.4375 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260052541.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:49 Heat of formation + Delta-G solvation = 34.673280 kcal Electronic energy + Delta-G solvation = -18079.658320 eV Core-core repulsion = 15369.096625 eV Total energy + Delta-G solvation = -2710.561695 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.99298 -37.92293 -34.11257 -32.95955 -30.49207 -30.18593 -28.22761 -26.64036 -24.64144 -23.76172 -22.51317 -20.30010 -19.63511 -18.71559 -17.85544 -16.84938 -15.52662 -15.26157 -14.60381 -14.40896 -13.74119 -13.61258 -13.44728 -13.35525 -13.16991 -12.69228 -12.64418 -12.27000 -12.17050 -11.86129 -11.57176 -11.18292 -10.91651 -10.79428 -10.67292 -10.37334 -10.08938 -9.78262 -9.58945 -9.53958 -9.15242 -8.51558 -8.41409 -8.30203 -7.80810 -6.28628 -3.99720 0.77682 1.36650 1.75021 2.85010 3.46794 3.50528 3.63921 4.07283 4.57165 4.71708 4.97497 5.04436 5.12123 5.25276 5.31643 5.38383 5.45996 5.57656 5.65949 5.71213 5.83277 5.96469 6.00500 6.04449 6.16804 6.19083 6.31039 6.46722 6.72024 6.90405 7.04838 7.27841 7.34355 7.66300 7.79570 7.88495 8.28707 8.49575 8.94048 9.71429 11.09703 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.031027 B = 0.004498 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.224985 B = 6223.090106 C = 6542.890484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.039 3.961 3 N -0.462 5.462 4 C 0.078 3.922 5 C 0.119 3.881 6 N -0.509 5.509 7 C 0.043 3.957 8 C -0.110 4.110 9 C 0.025 3.975 10 H 0.020 0.980 11 C -0.586 4.586 12 H 0.051 0.949 13 C 0.018 3.982 14 N -0.916 5.916 15 Si 1.072 2.928 16 H -0.290 1.290 17 H -0.288 1.288 18 H -0.288 1.288 19 C 0.053 3.947 20 C -0.198 4.198 21 C -0.070 4.070 22 S 0.091 5.909 23 H 0.076 0.924 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.048 0.952 27 H 0.084 0.916 28 H 0.032 0.968 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.271 0.729 33 H 0.021 0.979 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.063 0.937 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.551 -13.074 -11.716 19.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.239 4.239 3 N -0.177 5.177 4 C -0.053 4.053 5 C -0.012 4.012 6 N -0.233 5.233 7 C -0.085 4.085 8 C -0.149 4.149 9 C 0.006 3.994 10 H 0.039 0.961 11 C -0.624 4.624 12 H 0.069 0.931 13 C -0.186 4.186 14 N -0.552 5.552 15 Si 0.901 3.099 16 H -0.216 1.216 17 H -0.215 1.215 18 H -0.215 1.215 19 C -0.074 4.074 20 C -0.319 4.319 21 C -0.129 4.129 22 S 0.345 5.655 23 H 0.095 0.905 24 H 0.104 0.896 25 H 0.103 0.897 26 H 0.066 0.934 27 H 0.102 0.898 28 H 0.051 0.949 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.039 0.961 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.294 -13.657 -10.014 18.857 hybrid contribution -0.365 0.971 -1.873 2.141 sum -8.659 -12.686 -11.887 19.422 Atomic orbital electron populations 1.20368 0.85467 1.03123 1.04259 1.26811 1.01392 0.90798 1.04921 1.66042 1.04756 1.31572 1.15341 1.20005 0.89535 0.93925 1.01884 1.20691 0.94718 0.93429 0.92380 1.64696 1.04686 1.42693 1.11223 1.23219 0.94107 0.94912 0.96272 1.22698 0.96856 0.98853 0.96463 1.19645 0.93991 0.93599 0.92143 0.96148 1.22038 1.11474 1.22753 1.06133 0.93061 1.25770 1.01208 0.93601 0.98051 1.70730 1.14217 1.31189 1.39103 0.83497 0.75076 0.75692 0.75596 1.21559 1.21470 1.21492 1.22959 0.92051 0.94533 0.97838 1.25611 0.99967 0.95281 1.11086 1.20221 0.88575 1.00867 1.03288 1.83737 0.98455 1.13139 1.70146 0.90543 0.89564 0.89711 0.93378 0.89827 0.94949 0.91984 0.91510 0.92995 0.91733 0.96096 0.90727 0.89995 0.91765 0.90141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.47 36.01 0.38 -0.27 16 2 C 0.04 0.51 7.39 -13.45 -0.10 0.41 16 3 N -0.46 -7.46 10.53 -8.05 -0.08 -7.54 16 4 C 0.08 1.25 6.02 -84.22 -0.51 0.74 16 5 C 0.12 2.00 4.83 -4.98 -0.02 1.97 16 6 N -0.51 -10.09 5.20 -231.90 -1.20 -11.30 16 7 C 0.04 0.88 6.28 -1.90 -0.01 0.87 16 8 C -0.11 -2.64 5.57 -24.87 -0.14 -2.78 16 9 C 0.03 0.64 2.54 -90.41 -0.23 0.41 16 10 H 0.02 0.55 7.95 -51.93 -0.41 0.14 16 11 C -0.59 -16.44 8.38 -34.44 -0.29 -16.73 16 12 H 0.05 1.44 7.34 -52.49 -0.39 1.05 16 13 C 0.02 0.50 5.34 -17.82 -0.10 0.41 16 14 N -0.92 -27.64 13.45 55.43 0.75 -26.89 16 15 Si 1.07 25.47 29.90 -169.99 -5.08 20.39 16 16 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 C 0.05 1.14 6.27 -2.76 -0.02 1.12 16 20 C -0.20 -2.80 6.59 -35.92 -0.24 -3.04 16 21 C -0.07 -0.84 10.16 36.01 0.37 -0.47 16 22 S 0.09 1.08 23.17 -107.50 -2.49 -1.41 16 23 H 0.08 0.51 8.12 -51.93 -0.42 0.08 16 24 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.83 7.70 -51.93 -0.40 0.43 16 27 H 0.08 1.25 6.73 -51.93 -0.35 0.90 16 28 H 0.03 0.66 7.74 -51.92 -0.40 0.25 16 29 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.07 1.74 7.86 -51.93 -0.41 1.34 16 31 H 0.05 1.26 7.10 -51.93 -0.37 0.89 16 32 H 0.27 8.11 5.65 -40.82 -0.23 7.88 16 33 H 0.02 0.41 7.77 -51.93 -0.40 0.01 16 34 H 0.07 1.63 7.39 -51.92 -0.38 1.24 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.94 6.73 -51.93 -0.35 0.59 16 LS Contribution 312.19 15.07 4.70 4.70 Total: -1.00 -31.41 312.19 -9.74 -41.15 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -5.42 Total: -1.77 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: -0.90 Total: -17.34 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: -0.54 Total: -45.73 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -5.08 Total: 20.39 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -2.49 Total: -1.41 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.41 -9.74 -41.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260052541.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.823 kcal (2) G-P(sol) polarization free energy of solvation -31.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds