Wall clock time and date at job start Mon Mar 30 2020 06:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29029 * 124.91449 * 2 1 4 4 C 1.31779 * 117.12276 * 180.22431 * 3 2 1 5 5 C 1.50703 * 122.75206 * 179.74707 * 4 3 2 6 6 N 1.46898 * 109.47073 * 95.07386 * 5 4 3 7 7 C 1.48535 * 110.99977 * 281.86149 * 6 5 4 8 8 C 1.54936 * 103.23009 * 200.27860 * 7 6 5 9 9 C 1.54602 * 102.91744 * 37.41130 * 8 7 6 10 10 H 1.08995 * 110.39328 * 97.00563 * 9 8 7 11 11 C 1.50707 * 110.30576 * 219.12764 * 9 8 7 12 12 H 1.08002 * 119.99649 * 115.71492 * 11 9 8 13 13 C 1.37870 * 120.00095 * 295.71668 * 11 9 8 14 14 N 1.31515 * 120.00113 * 359.97438 * 13 11 9 15 15 Si 1.86804 * 120.00052 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46818 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47053 * 239.99976 * 15 13 11 18 18 H 1.48504 * 109.47002 * 120.00076 * 15 13 11 19 19 C 1.47892 * 111.00107 * 164.46347 * 6 5 4 20 20 C 1.33645 * 114.49981 * 359.48677 * 4 3 2 21 21 C 1.50701 * 126.03710 * 180.26939 * 20 4 3 22 22 S 1.70976 * 124.91754 * 179.68915 * 2 1 3 23 23 H 1.08997 * 109.46923 * 180.33246 * 1 2 3 24 24 H 1.09007 * 109.47212 * 300.33263 * 1 2 3 25 25 H 1.09000 * 109.47094 * 60.32720 * 1 2 3 26 26 H 1.08999 * 109.46771 * 335.07537 * 5 4 3 27 27 H 1.08998 * 109.47260 * 215.07663 * 5 4 3 28 28 H 1.09009 * 110.66350 * 318.71260 * 7 6 5 29 29 H 1.08996 * 110.67346 * 81.84026 * 7 6 5 30 30 H 1.08996 * 110.72524 * 279.05470 * 8 7 6 31 31 H 1.08998 * 110.72753 * 155.76366 * 8 7 6 32 32 H 0.97001 * 119.99948 * 0.02562 * 14 13 11 33 33 H 1.08996 * 109.92008 * 26.49164 * 19 6 5 34 34 H 1.09008 * 110.08133 * 265.28406 * 19 6 5 35 35 H 1.09001 * 109.47294 * 94.74097 * 21 20 4 36 36 H 1.08999 * 109.46724 * 214.74614 * 21 20 4 37 37 H 1.08999 * 109.46892 * 334.73874 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8794 -0.0046 5 6 4.5307 2.0246 -0.0108 6 7 4.9474 2.3200 1.3666 7 6 3.9036 3.0965 2.0834 8 6 4.6859 3.7483 3.2512 9 6 6.0462 4.0965 2.6041 10 1 6.0599 5.1392 2.2868 11 6 7.1695 3.8307 3.5729 12 1 7.9046 3.0708 3.3521 13 6 7.2589 4.5574 4.7411 14 7 6.3641 5.4830 5.0099 15 14 8.6517 4.2284 5.9417 16 1 9.5184 3.1462 5.4096 17 1 8.0886 3.8122 7.2512 18 1 9.4551 5.4648 6.1187 19 6 6.1612 3.1647 1.3835 20 6 3.9354 -0.4006 0.0022 21 6 5.3575 -0.8994 0.0049 22 16 2.4857 -1.4019 0.0076 23 1 -0.3633 -1.0276 0.0060 24 1 -0.3634 0.5190 0.8870 25 1 -0.3633 0.5087 -0.8929 26 1 4.0570 2.9055 -0.4439 27 1 5.4038 1.7528 -0.6041 28 1 3.4772 3.8600 1.4326 29 1 3.1251 2.4352 2.4637 30 1 4.8180 3.0405 4.0695 31 1 4.1815 4.6503 3.5976 32 1 5.6410 5.6541 4.3863 33 1 6.2153 3.7555 0.4692 34 1 7.0502 2.5406 1.4754 35 1 5.6722 -1.0944 1.0302 36 1 5.4208 -1.8195 -0.5759 37 1 6.0079 -0.1449 -0.4375 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260052541.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:48 Heat of formation + Delta-G solvation = 14.557916 kcal Electronic energy + Delta-G solvation = -18080.530588 eV Core-core repulsion = 15369.096625 eV Total energy + Delta-G solvation = -2711.433963 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.13570 -39.59647 -35.72827 -34.41229 -32.08943 -31.16293 -30.08479 -28.02733 -26.07820 -25.51109 -23.63835 -21.93774 -21.59197 -19.78806 -18.99273 -18.89527 -17.03886 -16.68232 -15.88849 -15.66408 -15.63751 -15.00358 -14.78247 -14.45855 -14.21512 -14.15902 -13.81924 -13.68023 -13.34709 -13.06285 -12.98776 -12.90220 -12.59207 -12.52769 -12.16617 -11.95992 -11.90967 -11.74653 -11.54887 -10.57721 -10.54057 -10.47202 -10.13314 -9.58507 -9.37898 -8.56678 -6.28582 -0.23355 0.40361 0.73563 1.54238 1.63228 1.72353 1.79449 2.59266 3.01162 3.22298 3.31089 3.85375 3.94364 3.97457 4.12712 4.16498 4.30311 4.34513 4.41525 4.50348 4.59957 4.65557 4.66113 4.73115 4.82682 4.93414 4.96459 5.01999 5.11309 5.12934 5.28847 5.34042 5.41106 5.94486 6.06649 6.13351 6.25086 6.68155 6.83472 7.50809 8.82130 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.031027 B = 0.004498 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.224985 B = 6223.090106 C = 6542.890484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.030 3.970 3 N -0.500 5.500 4 C 0.051 3.949 5 C 0.123 3.877 6 N -0.511 5.511 7 C 0.061 3.939 8 C -0.101 4.101 9 C 0.015 3.985 10 H -0.003 1.003 11 C -0.597 4.597 12 H 0.049 0.951 13 C -0.032 4.032 14 N -0.941 5.941 15 Si 1.118 2.882 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.280 1.280 19 C 0.065 3.935 20 C -0.212 4.212 21 C -0.070 4.070 22 S 0.146 5.854 23 H 0.103 0.897 24 H 0.086 0.914 25 H 0.094 0.906 26 H 0.042 0.958 27 H 0.102 0.898 28 H 0.038 0.962 29 H 0.063 0.937 30 H 0.040 0.960 31 H 0.039 0.961 32 H 0.260 0.740 33 H 0.037 0.963 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.724 -15.161 -12.565 21.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.248 4.248 3 N -0.216 5.216 4 C -0.080 4.080 5 C -0.008 4.008 6 N -0.236 5.236 7 C -0.067 4.067 8 C -0.140 4.140 9 C -0.004 4.004 10 H 0.015 0.985 11 C -0.635 4.635 12 H 0.067 0.933 13 C -0.230 4.230 14 N -0.579 5.579 15 Si 0.941 3.059 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.206 1.206 19 C -0.063 4.063 20 C -0.334 4.334 21 C -0.129 4.129 22 S 0.401 5.599 23 H 0.121 0.879 24 H 0.105 0.895 25 H 0.113 0.887 26 H 0.060 0.940 27 H 0.120 0.880 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.108 0.892 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.481 -15.762 -10.891 20.952 hybrid contribution -0.385 1.551 -1.666 2.308 sum -8.866 -14.211 -12.556 20.934 Atomic orbital electron populations 1.20554 0.82945 1.05057 1.04719 1.27498 1.03055 0.90894 1.03384 1.66041 1.05038 1.33317 1.17211 1.19903 0.89730 0.94253 1.04101 1.20685 0.95867 0.93876 0.90340 1.64649 1.03702 1.41638 1.13562 1.22984 0.93864 0.94851 0.95033 1.22461 0.96866 0.97845 0.96789 1.19660 0.93949 0.93233 0.93581 0.98504 1.22379 1.12021 1.22344 1.06717 0.93316 1.27188 1.02757 0.92979 1.00106 1.70846 1.14968 1.32741 1.39326 0.82912 0.72785 0.76420 0.73812 1.19577 1.20942 1.20617 1.22729 0.92838 0.94079 0.96632 1.25963 1.01880 0.95492 1.10019 1.20282 0.87403 1.02008 1.03234 1.83496 0.96328 1.11313 1.68782 0.87875 0.89518 0.88718 0.93993 0.87983 0.94402 0.91812 0.94126 0.94215 0.92928 0.94426 0.90976 0.90756 0.89238 0.90164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.13 10.47 71.24 0.75 -0.38 16 2 C 0.03 0.71 7.39 88.52 0.65 1.37 16 3 N -0.50 -15.55 10.53 -179.39 -1.89 -17.44 16 4 C 0.05 1.58 6.02 41.52 0.25 1.83 16 5 C 0.12 4.00 4.83 85.56 0.41 4.41 16 6 N -0.51 -20.02 5.20 -887.58 -4.61 -24.63 16 7 C 0.06 2.52 6.28 86.65 0.54 3.07 16 8 C -0.10 -4.98 5.57 31.80 0.18 -4.80 16 9 C 0.01 0.77 2.54 -10.66 -0.03 0.74 16 10 H 0.00 -0.17 7.95 -2.39 -0.02 -0.19 16 11 C -0.60 -33.92 8.38 25.60 0.21 -33.71 16 12 H 0.05 2.74 7.34 -2.91 -0.02 2.72 16 13 C -0.03 -1.87 5.34 84.65 0.45 -1.42 16 14 N -0.94 -58.03 13.45 21.44 0.29 -57.74 16 15 Si 1.12 51.10 29.90 68.60 2.05 53.15 16 16 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 17 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 18 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 19 C 0.06 2.75 6.27 86.45 0.54 3.29 16 20 C -0.21 -5.58 6.59 24.64 0.16 -5.42 16 21 C -0.07 -1.52 10.16 71.24 0.72 -0.80 16 22 S 0.15 3.07 23.17 -56.49 -1.31 1.76 16 23 H 0.10 1.02 8.12 -2.39 -0.02 1.00 16 24 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 25 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.04 1.41 7.70 -2.39 -0.02 1.39 16 27 H 0.10 2.88 6.73 -2.39 -0.02 2.87 16 28 H 0.04 1.53 7.74 -2.38 -0.02 1.52 16 29 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 30 H 0.04 2.18 7.86 -2.39 -0.02 2.16 16 31 H 0.04 2.01 7.10 -2.39 -0.02 1.99 16 32 H 0.26 16.14 5.65 -92.71 -0.52 15.62 16 33 H 0.04 1.46 7.77 -2.39 -0.02 1.44 16 34 H 0.07 3.10 7.39 -2.38 -0.02 3.09 16 35 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.08 1.72 6.73 -2.39 -0.02 1.71 16 Total: -1.00 -68.07 312.19 0.68 -67.39 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: 1.30 Total: 9.33 kcal Atomic # 6 Polarization: -36.67 SS G_CDS: 4.85 Total: -31.82 kcal Atomic # 7 Polarization: -93.60 SS G_CDS: -6.21 Total: -99.82 kcal Atomic # 14 Polarization: 51.10 SS G_CDS: 2.05 Total: 53.15 kcal Atomic # 16 Polarization: 3.07 SS G_CDS: -1.31 Total: 1.76 kcal Total: -68.07 0.68 -67.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260052541.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.950 kcal (2) G-P(sol) polarization free energy of solvation -68.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds