Wall clock time and date at job start Mon Mar 30 2020 06:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29026 * 124.92009 * 2 1 4 4 C 1.31778 * 117.12327 * 180.02562 * 3 2 1 5 5 C 1.50701 * 122.74566 * 179.97438 * 4 3 2 6 6 N 1.46899 * 109.47505 * 276.61276 * 5 4 3 7 7 C 1.47906 * 110.99920 * 67.05392 * 6 5 4 8 8 C 1.53991 * 107.06005 * 214.15865 * 7 6 5 9 9 C 1.54592 * 105.13956 * 1.22768 * 8 7 6 10 10 H 1.08998 * 110.72862 * 263.42010 * 9 8 7 11 11 C 1.50704 * 110.72755 * 140.31463 * 9 8 7 12 12 H 1.08001 * 119.99744 * 241.45834 * 11 9 8 13 13 C 1.37882 * 119.99790 * 61.45066 * 11 9 8 14 14 N 1.31514 * 119.99743 * 0.02562 * 13 11 9 15 15 Si 1.86794 * 119.99784 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47132 * 60.00173 * 15 13 11 17 17 H 1.48503 * 109.47173 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47301 * 299.99962 * 15 13 11 19 19 C 1.48534 * 110.99616 * 309.66260 * 6 5 4 20 20 C 1.33635 * 114.50428 * 0.23246 * 4 3 2 21 21 C 1.50703 * 126.03796 * 179.77186 * 20 4 3 22 22 S 1.70975 * 124.91401 * 180.02562 * 2 1 3 23 23 H 1.08991 * 109.47196 * 89.99594 * 1 2 3 24 24 H 1.09003 * 109.47210 * 209.99889 * 1 2 3 25 25 H 1.09000 * 109.46767 * 329.99889 * 1 2 3 26 26 H 1.08998 * 109.47100 * 156.61316 * 5 4 3 27 27 H 1.09006 * 109.47330 * 36.61339 * 5 4 3 28 28 H 1.09004 * 109.91601 * 333.51699 * 7 6 5 29 29 H 1.09002 * 109.91127 * 94.60527 * 7 6 5 30 30 H 1.09004 * 110.30785 * 120.13925 * 8 7 6 31 31 H 1.08995 * 110.31097 * 242.31183 * 8 7 6 32 32 H 0.97002 * 119.99304 * 179.97438 * 14 13 11 33 33 H 1.09000 * 110.66702 * 278.14925 * 19 6 5 34 34 H 1.09001 * 110.67078 * 41.28389 * 19 6 5 35 35 H 1.08997 * 109.47082 * 95.11988 * 21 20 4 36 36 H 1.08999 * 109.46885 * 215.12319 * 21 20 4 37 37 H 1.09000 * 109.47306 * 335.11759 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8792 -0.0005 5 6 4.5308 2.0244 -0.0012 6 7 4.7274 2.5000 -1.3771 7 6 3.4928 3.1204 -1.9049 8 6 3.4351 2.8017 -3.4103 9 6 4.6892 1.9420 -3.6894 10 1 5.5032 2.5591 -4.0697 11 6 4.3696 0.8302 -4.6553 12 1 4.4825 -0.1996 -4.3499 13 6 3.9329 1.1277 -5.9289 14 7 3.7959 2.3817 -6.3008 15 14 3.5361 -0.2503 -7.1259 16 1 2.4534 -1.0975 -6.5641 17 1 3.0901 0.3296 -8.4182 18 1 4.7487 -1.0787 -7.3467 19 6 5.0360 1.3709 -2.2915 20 6 3.9354 -0.4007 -0.0059 21 6 5.3575 -0.8996 -0.0127 22 16 2.4856 -1.4020 -0.0006 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 5.4839 1.6875 0.4064 27 1 4.1404 2.8369 0.6118 28 1 2.6217 2.6996 -1.4025 29 1 3.5245 4.1991 -1.7515 30 1 2.5311 2.2389 -3.6435 31 1 3.4698 3.7219 -3.9935 32 1 3.4890 2.5909 -7.1969 33 1 6.0922 1.1075 -2.2347 34 1 4.4104 0.5082 -2.0623 35 1 5.6737 -1.1096 1.0091 36 1 5.4199 -1.8111 -0.6070 37 1 6.0074 -0.1388 -0.4450 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260052544.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:52 Heat of formation + Delta-G solvation = 42.259773 kcal Electronic energy + Delta-G solvation = -18776.178277 eV Core-core repulsion = 16065.945557 eV Total energy + Delta-G solvation = -2710.232720 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.18946 -37.47531 -33.84834 -32.72205 -30.60386 -30.13065 -28.00176 -26.53305 -24.85334 -23.78438 -22.47976 -19.99152 -19.46949 -18.54524 -17.50434 -16.44727 -15.43385 -15.17762 -14.52882 -14.17932 -13.99766 -13.60320 -13.36326 -13.29682 -12.90311 -12.68394 -12.26451 -12.13893 -11.98081 -11.80189 -11.49316 -11.01815 -10.91242 -10.67174 -10.63652 -10.46865 -10.18987 -9.62237 -9.39912 -9.16212 -8.96177 -8.72410 -8.38330 -8.29837 -7.70848 -5.98425 -4.01474 0.90577 1.52704 1.91843 3.01170 3.31794 3.36627 3.38785 4.24586 4.44293 4.85596 5.09197 5.13686 5.22965 5.34513 5.37160 5.48545 5.57974 5.63522 5.83014 5.95268 5.96103 6.01163 6.08732 6.27028 6.38779 6.49466 6.54792 6.72175 6.91280 7.21257 7.28240 7.64233 7.72999 7.76269 7.92387 8.00623 8.08430 8.49110 9.00231 9.61966 11.11355 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.018168 B = 0.007117 C = 0.006461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.825297 B = 3933.325450 C = 4332.916315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.041 3.959 3 N -0.457 5.457 4 C 0.041 3.959 5 C 0.118 3.882 6 N -0.508 5.508 7 C 0.021 3.979 8 C -0.097 4.097 9 C 0.053 3.947 10 H 0.034 0.966 11 C -0.514 4.514 12 H 0.052 0.948 13 C 0.064 3.936 14 N -0.887 5.887 15 Si 0.888 3.112 16 H -0.278 1.278 17 H -0.287 1.287 18 H -0.277 1.277 19 C 0.033 3.967 20 C -0.207 4.207 21 C -0.079 4.079 22 S 0.094 5.906 23 H 0.085 0.915 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.260 0.740 33 H 0.059 0.941 34 H 0.045 0.955 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.762 -5.828 14.215 15.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.237 4.237 3 N -0.172 5.172 4 C -0.092 4.092 5 C -0.014 4.014 6 N -0.230 5.230 7 C -0.107 4.107 8 C -0.136 4.136 9 C 0.034 3.966 10 H 0.052 0.948 11 C -0.552 4.552 12 H 0.070 0.930 13 C -0.138 4.138 14 N -0.525 5.525 15 Si 0.715 3.285 16 H -0.204 1.204 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.094 4.094 20 C -0.329 4.329 21 C -0.138 4.138 22 S 0.349 5.651 23 H 0.104 0.896 24 H 0.095 0.905 25 H 0.105 0.895 26 H 0.103 0.897 27 H 0.099 0.901 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.875 -5.868 14.077 15.520 hybrid contribution -0.479 -0.656 -0.844 1.172 sum -3.355 -6.524 13.233 15.131 Atomic orbital electron populations 1.20390 0.85531 1.03607 1.03901 1.26854 1.01463 0.90888 1.04456 1.66136 1.04546 1.31246 1.15238 1.21070 0.90727 0.95146 1.02301 1.21093 0.94450 0.91973 0.93859 1.65102 1.31971 1.25664 1.00222 1.23149 0.91199 0.98250 0.98092 1.22238 1.00481 1.00329 0.90528 1.19518 0.93592 0.94255 0.89236 0.94799 1.21025 1.44971 0.92320 0.96916 0.92961 1.24949 0.95529 0.95282 0.98018 1.69973 1.46514 1.16897 1.19114 0.86735 0.78774 0.82472 0.80473 1.20409 1.21269 1.20240 1.23546 0.98948 0.92175 0.94695 1.25671 0.99986 0.95412 1.11800 1.20354 0.88966 1.02204 1.02238 1.83707 0.98542 1.13146 1.69667 0.89615 0.90527 0.89527 0.89703 0.90070 0.92558 0.92432 0.93233 0.92414 0.93034 0.92210 0.93720 0.91010 0.91025 0.89527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 10.46 36.01 0.38 -0.45 16 2 C 0.04 0.63 7.39 -13.45 -0.10 0.53 16 3 N -0.46 -8.03 8.76 -8.06 -0.07 -8.10 16 4 C 0.04 0.69 4.49 -84.23 -0.38 0.31 16 5 C 0.12 1.96 5.58 -4.98 -0.03 1.93 16 6 N -0.51 -10.12 5.54 -231.88 -1.28 -11.40 16 7 C 0.02 0.44 6.46 -2.75 -0.02 0.43 16 8 C -0.10 -2.42 5.51 -25.38 -0.14 -2.56 16 9 C 0.05 1.38 2.99 -89.91 -0.27 1.11 16 10 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 11 C -0.51 -14.42 8.42 -34.44 -0.29 -14.71 16 12 H 0.05 1.45 7.78 -52.49 -0.41 1.04 16 13 C 0.06 1.82 5.33 -17.82 -0.10 1.72 16 14 N -0.89 -26.02 12.44 55.43 0.69 -25.33 16 15 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 C 0.03 0.72 4.53 -1.89 -0.01 0.72 16 20 C -0.21 -3.19 5.19 -35.92 -0.19 -3.38 16 21 C -0.08 -1.00 9.49 36.01 0.34 -0.66 16 22 S 0.09 1.33 23.18 -107.50 -2.49 -1.17 16 23 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.08 1.22 6.93 -51.93 -0.36 0.86 16 27 H 0.08 1.29 8.11 -51.93 -0.42 0.87 16 28 H 0.06 1.20 5.58 -51.93 -0.29 0.91 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.05 1.33 7.84 -51.93 -0.41 0.93 16 31 H 0.06 1.51 8.05 -51.93 -0.42 1.10 16 32 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.06 1.23 7.68 -51.93 -0.40 0.83 16 34 H 0.04 1.00 4.93 -51.93 -0.26 0.74 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.09 1.15 5.50 -51.93 -0.29 0.87 16 LS Contribution 304.33 15.07 4.59 4.59 Total: -1.00 -30.79 304.33 -9.72 -40.52 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -5.34 Total: -0.71 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: -0.79 Total: -15.02 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: -0.66 Total: -44.83 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -2.49 Total: -1.17 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.79 -9.72 -40.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260052544.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.775 kcal (2) G-P(sol) polarization free energy of solvation -30.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds