Wall clock time and date at job start Mon Mar 30 2020 06:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29026 * 124.92009 * 2 1 4 4 C 1.31778 * 117.12327 * 180.02562 * 3 2 1 5 5 C 1.50701 * 122.74566 * 179.97438 * 4 3 2 6 6 N 1.46899 * 109.47505 * 276.61276 * 5 4 3 7 7 C 1.47906 * 110.99920 * 67.05392 * 6 5 4 8 8 C 1.53991 * 107.06005 * 214.15865 * 7 6 5 9 9 C 1.54592 * 105.13956 * 1.22768 * 8 7 6 10 10 H 1.08998 * 110.72862 * 263.42010 * 9 8 7 11 11 C 1.50704 * 110.72755 * 140.31463 * 9 8 7 12 12 H 1.08001 * 119.99744 * 241.45834 * 11 9 8 13 13 C 1.37882 * 119.99790 * 61.45066 * 11 9 8 14 14 N 1.31514 * 119.99743 * 0.02562 * 13 11 9 15 15 Si 1.86794 * 119.99784 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47132 * 60.00173 * 15 13 11 17 17 H 1.48503 * 109.47173 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47301 * 299.99962 * 15 13 11 19 19 C 1.48534 * 110.99616 * 309.66260 * 6 5 4 20 20 C 1.33635 * 114.50428 * 0.23246 * 4 3 2 21 21 C 1.50703 * 126.03796 * 179.77186 * 20 4 3 22 22 S 1.70975 * 124.91401 * 180.02562 * 2 1 3 23 23 H 1.08991 * 109.47196 * 89.99594 * 1 2 3 24 24 H 1.09003 * 109.47210 * 209.99889 * 1 2 3 25 25 H 1.09000 * 109.46767 * 329.99889 * 1 2 3 26 26 H 1.08998 * 109.47100 * 156.61316 * 5 4 3 27 27 H 1.09006 * 109.47330 * 36.61339 * 5 4 3 28 28 H 1.09004 * 109.91601 * 333.51699 * 7 6 5 29 29 H 1.09002 * 109.91127 * 94.60527 * 7 6 5 30 30 H 1.09004 * 110.30785 * 120.13925 * 8 7 6 31 31 H 1.08995 * 110.31097 * 242.31183 * 8 7 6 32 32 H 0.97002 * 119.99304 * 179.97438 * 14 13 11 33 33 H 1.09000 * 110.66702 * 278.14925 * 19 6 5 34 34 H 1.09001 * 110.67078 * 41.28389 * 19 6 5 35 35 H 1.08997 * 109.47082 * 95.11988 * 21 20 4 36 36 H 1.08999 * 109.46885 * 215.12319 * 21 20 4 37 37 H 1.09000 * 109.47306 * 335.11759 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8792 -0.0005 5 6 4.5308 2.0244 -0.0012 6 7 4.7274 2.5000 -1.3771 7 6 3.4928 3.1204 -1.9049 8 6 3.4351 2.8017 -3.4103 9 6 4.6892 1.9420 -3.6894 10 1 5.5032 2.5591 -4.0697 11 6 4.3696 0.8302 -4.6553 12 1 4.4825 -0.1996 -4.3499 13 6 3.9329 1.1277 -5.9289 14 7 3.7959 2.3817 -6.3008 15 14 3.5361 -0.2503 -7.1259 16 1 2.4534 -1.0975 -6.5641 17 1 3.0901 0.3296 -8.4182 18 1 4.7487 -1.0787 -7.3467 19 6 5.0360 1.3709 -2.2915 20 6 3.9354 -0.4007 -0.0059 21 6 5.3575 -0.8996 -0.0127 22 16 2.4856 -1.4020 -0.0006 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 5.4839 1.6875 0.4064 27 1 4.1404 2.8369 0.6118 28 1 2.6217 2.6996 -1.4025 29 1 3.5245 4.1991 -1.7515 30 1 2.5311 2.2389 -3.6435 31 1 3.4698 3.7219 -3.9935 32 1 3.4890 2.5909 -7.1969 33 1 6.0922 1.1075 -2.2347 34 1 4.4104 0.5082 -2.0623 35 1 5.6737 -1.1096 1.0091 36 1 5.4199 -1.8111 -0.6070 37 1 6.0074 -0.1388 -0.4450 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260052544.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:51 Heat of formation + Delta-G solvation = 22.241364 kcal Electronic energy + Delta-G solvation = -18777.046340 eV Core-core repulsion = 16065.945557 eV Total energy + Delta-G solvation = -2711.100783 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.47391 -39.10361 -35.45532 -34.33441 -32.28086 -31.21631 -29.85120 -28.03918 -26.40500 -25.35660 -23.75364 -21.62968 -21.42530 -19.73244 -18.74006 -18.45748 -16.96158 -16.83109 -16.30363 -15.63915 -15.45002 -15.03138 -14.59883 -14.29925 -14.21855 -14.05568 -13.77239 -13.62507 -13.29259 -13.05153 -12.97875 -12.94755 -12.60539 -12.49105 -12.13168 -12.06137 -12.04233 -11.59009 -11.11322 -10.86070 -10.62324 -10.51229 -10.09250 -9.53527 -9.27849 -8.15218 -6.25917 -0.23421 0.42395 0.77020 1.37621 1.39255 1.46932 1.79748 2.39706 3.13096 3.16392 3.34569 3.96371 4.02721 4.10585 4.17384 4.29626 4.42672 4.57321 4.62177 4.62721 4.68202 4.71364 4.78094 4.89664 4.90340 4.97535 5.04319 5.12187 5.24957 5.29645 5.35191 5.57802 5.75264 5.83593 5.99362 6.20948 6.36688 6.83177 6.84402 7.41475 8.94200 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.018168 B = 0.007117 C = 0.006461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.825297 B = 3933.325450 C = 4332.916315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.026 3.974 3 N -0.490 5.490 4 C 0.015 3.985 5 C 0.119 3.881 6 N -0.509 5.509 7 C 0.033 3.967 8 C -0.085 4.085 9 C 0.043 3.957 10 H 0.001 0.999 11 C -0.531 4.531 12 H 0.052 0.948 13 C 0.013 3.987 14 N -0.918 5.918 15 Si 0.952 3.048 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.267 1.267 19 C 0.053 3.947 20 C -0.216 4.216 21 C -0.079 4.079 22 S 0.129 5.871 23 H 0.084 0.916 24 H 0.105 0.895 25 H 0.091 0.909 26 H 0.110 0.890 27 H 0.088 0.912 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.021 0.979 31 H 0.033 0.967 32 H 0.261 0.739 33 H 0.072 0.928 34 H 0.042 0.958 35 H 0.099 0.901 36 H 0.076 0.924 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.852 -7.593 15.377 17.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.252 4.252 3 N -0.206 5.206 4 C -0.117 4.117 5 C -0.011 4.011 6 N -0.231 5.231 7 C -0.095 4.095 8 C -0.124 4.124 9 C 0.024 3.976 10 H 0.019 0.981 11 C -0.569 4.569 12 H 0.070 0.930 13 C -0.186 4.186 14 N -0.557 5.557 15 Si 0.778 3.222 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.192 1.192 19 C -0.074 4.074 20 C -0.338 4.338 21 C -0.138 4.138 22 S 0.384 5.616 23 H 0.103 0.897 24 H 0.124 0.876 25 H 0.110 0.890 26 H 0.128 0.872 27 H 0.106 0.894 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.040 0.960 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.118 0.882 36 H 0.095 0.905 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.962 -7.643 15.259 17.322 hybrid contribution -0.466 -0.132 -1.170 1.266 sum -3.428 -7.775 14.090 16.454 Atomic orbital electron populations 1.20548 0.83267 1.05335 1.04278 1.27499 1.03073 0.91024 1.03571 1.66127 1.05094 1.32685 1.16673 1.21078 0.90831 0.95733 1.04088 1.21156 0.95957 0.92515 0.91516 1.65071 1.31136 1.25207 1.01665 1.22977 0.92217 0.99143 0.95201 1.21990 0.98797 0.98515 0.93077 1.19493 0.92815 0.93816 0.91524 0.98082 1.21343 1.44993 0.92773 0.97784 0.92957 1.25767 0.95333 0.97638 0.99839 1.70109 1.47212 1.18872 1.19505 0.85700 0.78897 0.79541 0.78109 1.19739 1.20883 1.19171 1.23256 0.99516 0.92270 0.92394 1.26079 1.01720 0.95474 1.10538 1.20452 0.87270 1.02017 1.04054 1.83528 0.97340 1.11977 1.68778 0.89738 0.87649 0.89015 0.87221 0.89408 0.92314 0.91272 0.96022 0.94794 0.93048 0.90970 0.94009 0.88232 0.90514 0.90187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.53 10.46 71.24 0.75 -0.79 16 2 C 0.03 0.75 7.39 88.52 0.65 1.40 16 3 N -0.49 -16.71 8.76 -179.40 -1.57 -18.28 16 4 C 0.02 0.49 4.49 41.52 0.19 0.68 16 5 C 0.12 3.76 5.58 85.56 0.48 4.24 16 6 N -0.51 -19.86 5.54 -887.54 -4.91 -24.77 16 7 C 0.03 1.39 6.46 86.44 0.56 1.95 16 8 C -0.08 -4.38 5.51 31.47 0.17 -4.21 16 9 C 0.04 2.27 2.99 -10.33 -0.03 2.24 16 10 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 11 C -0.53 -30.16 8.42 25.60 0.22 -29.95 16 12 H 0.05 2.90 7.78 -2.91 -0.02 2.88 16 13 C 0.01 0.76 5.33 84.66 0.45 1.21 16 14 N -0.92 -55.11 12.44 21.45 0.27 -54.85 16 15 Si 0.95 44.43 29.54 68.60 2.03 46.46 16 16 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 17 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 19 C 0.05 2.28 4.53 86.65 0.39 2.67 16 20 C -0.22 -6.23 5.19 24.64 0.13 -6.10 16 21 C -0.08 -1.80 9.49 71.24 0.68 -1.12 16 22 S 0.13 3.33 23.18 -56.49 -1.31 2.02 16 23 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.11 2.88 6.93 -2.39 -0.02 2.86 16 27 H 0.09 2.64 8.11 -2.38 -0.02 2.62 16 28 H 0.06 2.50 5.58 -2.38 -0.01 2.48 16 29 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 30 H 0.02 1.19 7.84 -2.39 -0.02 1.17 16 31 H 0.03 1.85 8.05 -2.39 -0.02 1.83 16 32 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 33 H 0.07 2.90 7.68 -2.39 -0.02 2.88 16 34 H 0.04 1.83 4.93 -2.39 -0.01 1.82 16 35 H 0.10 1.70 8.14 -2.39 -0.02 1.69 16 36 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.08 1.94 5.50 -2.39 -0.01 1.92 16 Total: -1.00 -66.80 304.33 0.19 -66.61 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 1.06 Total: 10.58 kcal Atomic # 6 Polarization: -32.41 SS G_CDS: 4.63 Total: -27.78 kcal Atomic # 7 Polarization: -91.68 SS G_CDS: -6.22 Total: -97.90 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Atomic # 16 Polarization: 3.33 SS G_CDS: -1.31 Total: 2.02 kcal Total: -66.80 0.19 -66.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260052544.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.852 kcal (2) G-P(sol) polarization free energy of solvation -66.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds