Wall clock time and date at job start Mon Mar 30 2020 07:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47209 * 2 1 4 4 H 1.09000 * 109.47315 * 305.00215 * 3 2 1 5 5 C 1.53008 * 109.47070 * 64.99754 * 3 2 1 6 6 C 1.50701 * 109.47194 * 184.99637 * 3 2 1 7 7 C 1.38233 * 120.00786 * 300.00357 * 6 3 2 8 8 C 1.38223 * 120.01148 * 179.97438 * 7 6 3 9 9 C 1.38258 * 120.02689 * 0.02562 * 8 7 6 10 10 C 1.50699 * 119.99465 * 179.97438 * 9 8 7 11 11 C 1.52995 * 109.47259 * 269.97718 * 10 9 8 12 12 C 1.50699 * 109.47259 * 180.02562 * 11 10 9 13 13 H 1.08004 * 119.99959 * 359.97438 * 12 11 10 14 14 C 1.37880 * 120.00142 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99958 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00089 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.46920 * 89.99978 * 16 14 12 18 18 H 1.48496 * 109.47240 * 210.00255 * 16 14 12 19 19 H 1.48499 * 109.47412 * 330.00536 * 16 14 12 20 20 C 1.38195 * 120.01593 * 359.97438 * 9 8 7 21 21 C 1.38329 * 120.00405 * 119.95538 * 6 3 2 22 22 Cl 1.73607 * 120.01188 * 0.04911 * 21 6 3 23 23 H 1.09001 * 109.46973 * 300.00136 * 1 2 3 24 24 H 1.09002 * 109.46983 * 59.99696 * 1 2 3 25 25 H 1.08996 * 109.46970 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47146 * 240.00124 * 2 1 3 27 27 H 1.09002 * 109.46995 * 119.99747 * 2 1 3 28 28 H 1.09000 * 109.46675 * 60.00069 * 5 3 2 29 29 H 1.08994 * 109.47206 * 179.97438 * 5 3 2 30 30 H 1.08999 * 109.47253 * 300.00352 * 5 3 2 31 31 H 1.08004 * 119.99513 * 359.97438 * 7 6 3 32 32 H 1.08001 * 119.98327 * 179.97438 * 8 7 6 33 33 H 1.09000 * 109.47043 * 29.97808 * 10 9 8 34 34 H 1.09006 * 109.47315 * 149.97274 * 10 9 8 35 35 H 1.09000 * 109.47167 * 300.00015 * 11 10 9 36 36 H 1.08994 * 109.47179 * 59.99967 * 11 10 9 37 37 H 0.96994 * 119.99624 * 180.02562 * 15 14 12 38 38 H 1.07992 * 120.00897 * 179.73075 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6352 2.1266 1.3074 6 6 3.5419 1.4443 -0.1237 7 6 4.3153 0.8167 0.8348 8 6 5.6929 0.8178 0.7211 9 6 6.2981 1.4471 -0.3510 10 6 7.8000 1.4484 -0.4739 11 6 8.3690 2.6768 0.2388 12 6 9.8710 2.6784 0.1153 13 1 10.3698 1.8826 -0.4178 14 6 10.6083 3.6959 0.6830 15 7 10.0008 4.6647 1.3326 16 14 12.4700 3.6975 0.5305 17 1 12.8654 4.4319 -0.6982 18 1 13.0633 4.3635 1.7178 19 1 12.9614 2.2985 0.4506 20 6 5.5260 2.0748 -1.3099 21 6 4.1468 2.0732 -1.1971 22 17 3.1761 2.8616 -2.4013 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.0698 1.5875 2.1492 29 1 1.9989 3.1541 1.3076 30 1 0.5489 2.1253 1.3970 31 1 3.8432 0.3254 1.6727 32 1 6.2967 0.3277 1.4705 33 1 8.2027 0.5443 -0.0172 34 1 8.0784 1.4781 -1.5274 35 1 7.9663 3.5808 -0.2179 36 1 8.0908 2.6470 1.2922 37 1 10.5195 5.3806 1.7316 38 1 5.9990 2.5700 -2.1449 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260204990.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:12 Heat of formation + Delta-G solvation = -25.335664 kcal Electronic energy + Delta-G solvation = -17458.977855 eV Core-core repulsion = 14711.477520 eV Total energy + Delta-G solvation = -2747.500335 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.113 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.61758 -36.52238 -36.27641 -33.77947 -32.01650 -30.46771 -30.04579 -28.20610 -25.54357 -24.06029 -22.78118 -21.88430 -20.45080 -19.60146 -16.59651 -16.10943 -15.73969 -15.16140 -14.61901 -14.50311 -14.10328 -13.59046 -13.55351 -13.26820 -12.65492 -12.54526 -12.44189 -12.17251 -11.87351 -11.70691 -11.44821 -11.43262 -11.06932 -11.01413 -10.92158 -10.76450 -10.56663 -10.43759 -10.24273 -9.87279 -9.60481 -9.13109 -8.52772 -8.36452 -8.07133 -6.01624 -4.05036 1.47516 1.58998 2.33976 3.31020 3.37371 3.40392 3.92023 4.44520 4.61425 4.72909 4.95703 5.12088 5.29416 5.33534 5.34023 5.37239 5.46113 5.52122 5.61888 5.68030 5.82481 5.85739 5.89579 5.94675 5.96703 6.21117 6.22944 6.28036 6.32903 6.56887 6.59822 6.67504 6.91990 6.99337 7.19604 7.64852 7.77524 7.97533 8.37602 9.01815 9.59222 11.09361 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.032186 B = 0.003883 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.736488 B = 7209.522064 C = 7518.150687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C -0.057 4.057 4 H 0.085 0.915 5 C -0.144 4.144 6 C -0.089 4.089 7 C -0.103 4.103 8 C -0.114 4.114 9 C -0.047 4.047 10 C -0.080 4.080 11 C 0.030 3.970 12 C -0.523 4.523 13 H 0.056 0.944 14 C 0.057 3.943 15 N -0.894 5.894 16 Si 0.892 3.108 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.110 4.110 21 C -0.029 4.029 22 Cl -0.083 7.083 23 H 0.056 0.944 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.018 0.982 36 H 0.018 0.982 37 H 0.261 0.739 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.672 -7.986 -2.558 19.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.151 4.151 3 C -0.076 4.076 4 H 0.103 0.897 5 C -0.201 4.201 6 C -0.089 4.089 7 C -0.121 4.121 8 C -0.132 4.132 9 C -0.047 4.047 10 C -0.118 4.118 11 C -0.007 4.007 12 C -0.562 4.562 13 H 0.074 0.926 14 C -0.144 4.144 15 N -0.533 5.533 16 Si 0.720 3.280 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.128 4.128 21 C -0.056 4.056 22 Cl -0.054 7.054 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.142 0.858 32 H 0.144 0.856 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.036 0.964 36 H 0.036 0.964 37 H 0.070 0.930 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -17.728 -7.752 -2.562 19.518 hybrid contribution 1.042 0.289 -0.128 1.089 sum -16.686 -7.463 -2.690 18.476 Atomic orbital electron populations 1.21827 0.95876 1.01416 1.01899 1.21559 0.95581 0.95760 1.02224 1.20245 0.90661 0.96936 0.99709 0.89695 1.21877 1.00924 1.00801 0.96467 1.19518 0.95642 0.99493 0.94282 1.20836 0.93463 0.99607 0.98222 1.21184 0.94282 0.99738 0.97968 1.20329 0.97623 0.93966 0.92796 1.20872 0.87359 1.01889 1.01637 1.19079 0.95170 0.91041 0.95434 1.21240 0.91814 1.08494 1.34617 0.92557 1.25025 0.98589 0.95553 0.95219 1.69971 1.35537 1.11926 1.35825 0.86591 0.85637 0.78177 0.77581 1.20639 1.21216 1.19839 1.20966 0.90920 1.00402 1.00539 1.20756 0.91556 1.00878 0.92368 1.98319 1.71548 1.79532 1.55975 0.92465 0.92791 0.92901 0.91937 0.91841 0.92487 0.92464 0.92320 0.85799 0.85561 0.91884 0.92001 0.96389 0.96368 0.92950 0.85151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.67 37.16 0.36 -0.88 16 2 C -0.11 -1.10 5.14 -26.73 -0.14 -1.24 16 3 C -0.06 -0.64 2.46 -91.77 -0.23 -0.87 16 4 H 0.08 0.99 6.17 -51.93 -0.32 0.67 16 5 C -0.14 -1.48 8.76 37.16 0.33 -1.16 16 6 C -0.09 -1.23 4.78 -104.59 -0.50 -1.73 16 7 C -0.10 -1.43 8.76 -39.59 -0.35 -1.78 16 8 C -0.11 -1.81 9.70 -39.58 -0.38 -2.19 16 9 C -0.05 -0.84 5.13 -104.63 -0.54 -1.38 16 10 C -0.08 -1.63 5.28 -27.89 -0.15 -1.77 16 11 C 0.03 0.76 4.95 -27.89 -0.14 0.62 16 12 C -0.52 -14.66 9.11 -34.44 -0.31 -14.98 16 13 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 15 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 16 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 20 C -0.11 -1.86 9.49 -39.55 -0.38 -2.24 16 21 C -0.03 -0.45 6.31 -39.50 -0.25 -0.70 16 22 Cl -0.08 -1.14 27.01 -51.86 -1.40 -2.54 16 23 H 0.06 0.43 6.56 -51.93 -0.34 0.09 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.59 7.57 -51.93 -0.39 0.20 16 28 H 0.06 0.57 7.39 -51.93 -0.38 0.18 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.51 6.56 -51.93 -0.34 0.17 16 31 H 0.12 1.41 7.16 -52.48 -0.38 1.03 16 32 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 33 H 0.06 1.22 8.09 -51.93 -0.42 0.80 16 34 H 0.06 1.22 8.09 -51.93 -0.42 0.80 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 38 H 0.13 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 324.78 15.07 4.89 4.89 Total: -1.00 -29.42 324.78 -9.48 -38.90 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -5.92 Total: -2.91 kcal Atomic # 6 Polarization: -25.97 SS G_CDS: -2.77 Total: -28.73 kcal Atomic # 7 Polarization: -26.86 SS G_CDS: 0.74 Total: -26.12 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -1.40 Total: -2.54 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.42 -9.48 -38.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260204990.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.559 kcal (2) G-P(sol) polarization free energy of solvation -29.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds