Wall clock time and date at job start Mon Mar 30 2020 07:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47209 * 2 1 4 4 H 1.09000 * 109.47315 * 305.00215 * 3 2 1 5 5 C 1.53008 * 109.47070 * 64.99754 * 3 2 1 6 6 C 1.50701 * 109.47194 * 184.99637 * 3 2 1 7 7 C 1.38233 * 120.00786 * 300.00357 * 6 3 2 8 8 C 1.38223 * 120.01148 * 179.97438 * 7 6 3 9 9 C 1.38258 * 120.02689 * 0.02562 * 8 7 6 10 10 C 1.50699 * 119.99465 * 179.97438 * 9 8 7 11 11 C 1.52995 * 109.47259 * 269.97718 * 10 9 8 12 12 C 1.50699 * 109.47259 * 180.02562 * 11 10 9 13 13 H 1.08004 * 119.99959 * 359.97438 * 12 11 10 14 14 C 1.37880 * 120.00142 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99958 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00089 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.46920 * 89.99978 * 16 14 12 18 18 H 1.48496 * 109.47240 * 210.00255 * 16 14 12 19 19 H 1.48499 * 109.47412 * 330.00536 * 16 14 12 20 20 C 1.38195 * 120.01593 * 359.97438 * 9 8 7 21 21 C 1.38329 * 120.00405 * 119.95538 * 6 3 2 22 22 Cl 1.73607 * 120.01188 * 0.04911 * 21 6 3 23 23 H 1.09001 * 109.46973 * 300.00136 * 1 2 3 24 24 H 1.09002 * 109.46983 * 59.99696 * 1 2 3 25 25 H 1.08996 * 109.46970 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47146 * 240.00124 * 2 1 3 27 27 H 1.09002 * 109.46995 * 119.99747 * 2 1 3 28 28 H 1.09000 * 109.46675 * 60.00069 * 5 3 2 29 29 H 1.08994 * 109.47206 * 179.97438 * 5 3 2 30 30 H 1.08999 * 109.47253 * 300.00352 * 5 3 2 31 31 H 1.08004 * 119.99513 * 359.97438 * 7 6 3 32 32 H 1.08001 * 119.98327 * 179.97438 * 8 7 6 33 33 H 1.09000 * 109.47043 * 29.97808 * 10 9 8 34 34 H 1.09006 * 109.47315 * 149.97274 * 10 9 8 35 35 H 1.09000 * 109.47167 * 300.00015 * 11 10 9 36 36 H 1.08994 * 109.47179 * 59.99967 * 11 10 9 37 37 H 0.96994 * 119.99624 * 180.02562 * 15 14 12 38 38 H 1.07992 * 120.00897 * 179.73075 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6352 2.1266 1.3074 6 6 3.5419 1.4443 -0.1237 7 6 4.3153 0.8167 0.8348 8 6 5.6929 0.8178 0.7211 9 6 6.2981 1.4471 -0.3510 10 6 7.8000 1.4484 -0.4739 11 6 8.3690 2.6768 0.2388 12 6 9.8710 2.6784 0.1153 13 1 10.3698 1.8826 -0.4178 14 6 10.6083 3.6959 0.6830 15 7 10.0008 4.6647 1.3326 16 14 12.4700 3.6975 0.5305 17 1 12.8654 4.4319 -0.6982 18 1 13.0633 4.3635 1.7178 19 1 12.9614 2.2985 0.4506 20 6 5.5260 2.0748 -1.3099 21 6 4.1468 2.0732 -1.1971 22 17 3.1761 2.8616 -2.4013 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.0698 1.5875 2.1492 29 1 1.9989 3.1541 1.3076 30 1 0.5489 2.1253 1.3970 31 1 3.8432 0.3254 1.6727 32 1 6.2967 0.3277 1.4705 33 1 8.2027 0.5443 -0.0172 34 1 8.0784 1.4781 -1.5274 35 1 7.9663 3.5808 -0.2179 36 1 8.0908 2.6470 1.2922 37 1 10.5195 5.3806 1.7316 38 1 5.9990 2.5700 -2.1449 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260204990.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:11 Heat of formation + Delta-G solvation = -38.172344 kcal Electronic energy + Delta-G solvation = -17459.534495 eV Core-core repulsion = 14711.477520 eV Total energy + Delta-G solvation = -2748.056976 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.113 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.79872 -37.67875 -37.35492 -35.60374 -33.68619 -31.69038 -31.23659 -29.49505 -27.09736 -25.24762 -23.99144 -23.37427 -21.90470 -20.65002 -18.58971 -17.39962 -16.94239 -16.52713 -16.31570 -15.52463 -15.08874 -14.92457 -14.79845 -14.48924 -14.21517 -14.10159 -13.63299 -13.25194 -13.03661 -12.92955 -12.85843 -12.71071 -12.44543 -12.33160 -12.30049 -12.11734 -11.74931 -11.67151 -11.50992 -11.38997 -11.26083 -11.10131 -10.56490 -9.75162 -9.36546 -8.20080 -6.32218 0.23922 0.35101 1.15299 1.40580 1.41799 1.53026 2.40622 2.68019 3.12939 3.62559 3.76414 4.02885 4.10727 4.19032 4.34008 4.36795 4.46653 4.56512 4.62628 4.71884 4.77665 4.84065 4.89234 4.96788 5.06169 5.11286 5.16421 5.19533 5.25556 5.32584 5.37069 5.48952 5.51845 5.55938 5.59849 5.81747 5.82935 5.92789 6.21888 6.84673 7.37351 8.91446 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.032186 B = 0.003883 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.736488 B = 7209.522064 C = 7518.150687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 C -0.056 4.056 4 H 0.081 0.919 5 C -0.143 4.143 6 C -0.081 4.081 7 C -0.097 4.097 8 C -0.119 4.119 9 C -0.073 4.073 10 C -0.065 4.065 11 C 0.037 3.963 12 C -0.544 4.544 13 H 0.064 0.936 14 C 0.000 4.000 15 N -0.933 5.933 16 Si 0.966 3.034 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.261 1.261 20 C -0.123 4.123 21 C -0.040 4.040 22 Cl -0.070 7.070 23 H 0.065 0.935 24 H 0.052 0.948 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.042 0.958 30 H 0.078 0.922 31 H 0.156 0.844 32 H 0.135 0.865 33 H 0.071 0.929 34 H 0.062 0.938 35 H -0.013 1.013 36 H -0.007 1.007 37 H 0.263 0.737 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.576 -9.224 -2.256 20.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.148 4.148 3 C -0.075 4.075 4 H 0.099 0.901 5 C -0.200 4.200 6 C -0.082 4.082 7 C -0.115 4.115 8 C -0.137 4.137 9 C -0.073 4.073 10 C -0.103 4.103 11 C 0.000 4.000 12 C -0.582 4.582 13 H 0.082 0.918 14 C -0.198 4.198 15 N -0.573 5.573 16 Si 0.790 3.210 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.185 1.185 20 C -0.142 4.142 21 C -0.067 4.067 22 Cl -0.041 7.041 23 H 0.084 0.916 24 H 0.071 0.929 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.097 0.903 31 H 0.173 0.827 32 H 0.153 0.847 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.005 0.995 36 H 0.011 0.989 37 H 0.072 0.928 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -18.641 -9.003 -2.274 20.826 hybrid contribution 1.211 0.690 -0.234 1.413 sum -17.430 -8.313 -2.508 19.473 Atomic orbital electron populations 1.21810 0.94473 1.02230 1.02263 1.21540 0.96777 0.94258 1.02262 1.20317 0.88556 0.98346 1.00244 0.90070 1.21882 1.02312 0.99830 0.95932 1.19934 0.97354 0.97708 0.93201 1.21142 0.92551 0.98933 0.98859 1.21361 0.95516 0.99465 0.97382 1.20141 0.96189 0.96422 0.94574 1.20576 0.89340 0.99469 1.00880 1.18909 0.94578 0.92326 0.94184 1.21706 0.93183 1.08778 1.34528 0.91813 1.25996 1.04069 0.95054 0.94700 1.70111 1.37663 1.12732 1.36840 0.85437 0.79045 0.78799 0.77715 1.19883 1.20788 1.18479 1.20976 0.91927 1.00761 1.00494 1.20870 0.91186 1.01310 0.93327 1.98317 1.70954 1.79310 1.55535 0.91638 0.92911 0.91915 0.92744 0.91000 0.91794 0.93883 0.90316 0.82678 0.84731 0.91081 0.91908 0.99507 0.98890 0.92783 0.85838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.67 71.98 0.70 -1.30 16 2 C -0.11 -1.85 5.14 30.59 0.16 -1.69 16 3 C -0.06 -1.15 2.46 -11.54 -0.03 -1.18 16 4 H 0.08 1.74 6.17 -2.39 -0.01 1.72 16 5 C -0.14 -2.58 8.76 71.98 0.63 -1.95 16 6 C -0.08 -2.14 4.78 -19.84 -0.09 -2.24 16 7 C -0.10 -2.51 8.76 22.26 0.20 -2.32 16 8 C -0.12 -3.73 9.70 22.27 0.22 -3.51 16 9 C -0.07 -2.66 5.13 -19.87 -0.10 -2.76 16 10 C -0.07 -2.72 5.28 29.85 0.16 -2.56 16 11 C 0.04 1.98 4.95 29.85 0.15 2.13 16 12 C -0.54 -31.03 9.11 25.60 0.23 -30.80 16 13 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 14 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 15 N -0.93 -57.39 13.29 21.45 0.28 -57.10 16 16 Si 0.97 44.30 29.54 68.60 2.03 46.33 16 17 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 18 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 19 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 20 C -0.12 -4.27 9.49 22.29 0.21 -4.06 16 21 C -0.04 -1.23 6.31 22.32 0.14 -1.09 16 22 Cl -0.07 -1.89 27.01 -2.72 -0.07 -1.96 16 23 H 0.06 0.76 6.56 -2.39 -0.02 0.75 16 24 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.07 1.09 7.57 -2.39 -0.02 1.07 16 28 H 0.06 1.07 7.39 -2.39 -0.02 1.05 16 29 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.08 1.12 6.56 -2.39 -0.02 1.10 16 31 H 0.16 3.02 7.16 -2.91 -0.02 3.00 16 32 H 0.13 3.90 8.06 -2.91 -0.02 3.87 16 33 H 0.07 2.78 8.09 -2.39 -0.02 2.76 16 34 H 0.06 2.54 8.09 -2.38 -0.02 2.52 16 35 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 36 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 37 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 38 H 0.12 4.31 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -63.96 324.78 6.28 -57.67 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: 1.02 Total: 7.95 kcal Atomic # 6 Polarization: -55.90 SS G_CDS: 3.02 Total: -52.88 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: 0.28 Total: -57.10 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 17 Polarization: -1.89 SS G_CDS: -0.07 Total: -1.96 kcal Total: -63.96 6.28 -57.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260204990.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.501 kcal (2) G-P(sol) polarization free energy of solvation -63.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds