Wall clock time and date at job start Mon Mar 30 2020 07:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46816 * 2 1 4 4 H 1.08999 * 109.47654 * 55.00196 * 3 2 1 5 5 C 1.52997 * 109.47316 * 294.99918 * 3 2 1 6 6 C 1.50703 * 109.47143 * 175.00415 * 3 2 1 7 7 C 1.38235 * 120.01086 * 59.99680 * 6 3 2 8 8 C 1.38221 * 120.01454 * 179.74853 * 7 6 3 9 9 C 1.38259 * 120.02727 * 359.95749 * 8 7 6 10 10 C 1.50695 * 119.99299 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.47048 * 90.00070 * 10 9 8 12 12 C 1.50704 * 109.47044 * 179.97438 * 11 10 9 13 13 H 1.07996 * 119.99862 * 0.02562 * 12 11 10 14 14 C 1.37874 * 119.99806 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00410 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 120.00012 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.46769 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47134 * 119.99659 * 16 14 12 19 19 H 1.48498 * 109.47410 * 240.00316 * 16 14 12 20 20 C 1.38193 * 120.01200 * 0.02562 * 9 8 7 21 21 C 1.38335 * 120.00097 * 239.72661 * 6 3 2 22 22 Cl 1.73597 * 120.01783 * 0.24590 * 21 6 3 23 23 H 1.08997 * 109.47407 * 60.00489 * 1 2 3 24 24 H 1.09003 * 109.47176 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47237 * 299.99734 * 1 2 3 26 26 H 1.09001 * 109.47237 * 240.00266 * 2 1 3 27 27 H 1.08997 * 109.47407 * 119.99511 * 2 1 3 28 28 H 1.08998 * 109.47655 * 180.02562 * 5 3 2 29 29 H 1.08999 * 109.47440 * 300.00405 * 5 3 2 30 30 H 1.08999 * 109.46995 * 60.00013 * 5 3 2 31 31 H 1.07995 * 119.98862 * 359.72708 * 7 6 3 32 32 H 1.08001 * 119.98312 * 179.97438 * 8 7 6 33 33 H 1.09005 * 109.47417 * 210.00215 * 10 9 8 34 34 H 1.09001 * 109.47418 * 329.99559 * 10 9 8 35 35 H 1.09004 * 109.47403 * 299.99592 * 11 10 9 36 36 H 1.09002 * 109.47566 * 60.00030 * 11 10 9 37 37 H 0.97004 * 120.00483 * 180.02562 * 15 14 12 38 38 H 1.08004 * 120.00840 * 180.02562 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6351 2.1265 -1.3073 6 6 3.5418 1.4444 0.1237 7 6 4.3153 0.8169 -0.8348 8 6 5.6931 0.8230 -0.7241 9 6 6.2985 1.4575 0.3447 10 6 7.8006 1.4632 0.4649 11 6 8.3650 2.6905 -0.2535 12 6 9.8672 2.6965 -0.1328 13 1 10.3691 1.9041 0.4024 14 6 10.6008 3.7132 -0.7065 15 7 9.9897 4.6780 -1.3587 16 14 12.4629 3.7204 -0.5575 17 1 12.9019 2.5329 0.2187 18 1 13.0681 3.6766 -1.9129 19 1 12.8989 4.9569 0.1397 20 6 5.5263 2.0855 1.3034 21 6 4.1469 2.0790 1.1937 22 17 3.1763 2.8678 2.3976 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 1.9988 3.1541 -1.3076 29 1 2.0697 1.5875 -2.1492 30 1 0.5488 2.1252 -1.3969 31 1 3.8430 0.3214 -1.6701 32 1 6.2969 0.3322 -1.4731 33 1 8.0808 1.4977 1.5178 34 1 8.2050 0.5585 0.0109 35 1 8.0850 2.6560 -1.3064 36 1 7.9608 3.5952 0.2005 37 1 10.5058 5.3931 -1.7627 38 1 5.9994 2.5814 2.1381 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260204996.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:14 Heat of formation + Delta-G solvation = -25.368218 kcal Electronic energy + Delta-G solvation = -17458.907667 eV Core-core repulsion = 14711.405920 eV Total energy + Delta-G solvation = -2747.501747 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.113 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.61751 -36.52308 -36.27747 -33.78044 -32.01742 -30.46756 -30.04612 -28.20603 -25.54433 -24.06147 -22.78193 -21.88510 -20.45124 -19.60156 -16.59764 -16.11045 -15.74029 -15.16245 -14.61943 -14.50049 -14.10481 -13.58991 -13.55120 -13.26935 -12.65601 -12.54731 -12.44567 -12.17236 -11.87227 -11.70570 -11.45061 -11.43394 -11.06862 -11.01836 -10.93420 -10.75749 -10.55785 -10.43594 -10.23793 -9.87706 -9.60913 -9.11759 -8.52804 -8.36917 -8.07139 -6.01799 -4.05170 1.47479 1.58990 2.33980 3.29962 3.37571 3.41417 3.92012 4.44466 4.61377 4.72881 4.95725 5.12076 5.29453 5.33490 5.33939 5.37233 5.46122 5.52093 5.61878 5.67981 5.82444 5.85721 5.89584 5.94661 5.96718 6.21080 6.22933 6.28055 6.32861 6.56867 6.59809 6.67483 6.91958 6.99298 7.19578 7.65017 7.77424 7.97405 8.37521 9.01927 9.59196 11.09183 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.032169 B = 0.003883 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.207382 B = 7209.466104 C = 7518.212645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C -0.057 4.057 4 H 0.085 0.915 5 C -0.144 4.144 6 C -0.089 4.089 7 C -0.103 4.103 8 C -0.114 4.114 9 C -0.047 4.047 10 C -0.080 4.080 11 C 0.029 3.971 12 C -0.523 4.523 13 H 0.057 0.943 14 C 0.057 3.943 15 N -0.893 5.893 16 Si 0.892 3.108 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.110 4.110 21 C -0.029 4.029 22 Cl -0.082 7.082 23 H 0.056 0.944 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.018 0.982 36 H 0.018 0.982 37 H 0.260 0.740 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.653 -8.029 2.627 19.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.151 4.151 3 C -0.075 4.075 4 H 0.103 0.897 5 C -0.201 4.201 6 C -0.089 4.089 7 C -0.121 4.121 8 C -0.132 4.132 9 C -0.047 4.047 10 C -0.118 4.118 11 C -0.008 4.008 12 C -0.561 4.561 13 H 0.075 0.925 14 C -0.144 4.144 15 N -0.533 5.533 16 Si 0.720 3.280 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.128 4.128 21 C -0.056 4.056 22 Cl -0.054 7.054 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.142 0.858 32 H 0.144 0.856 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.036 0.964 36 H 0.036 0.964 37 H 0.070 0.930 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -17.709 -7.796 2.639 19.528 hybrid contribution 1.040 0.296 0.107 1.086 sum -16.670 -7.500 2.747 18.484 Atomic orbital electron populations 1.21827 0.95878 1.01416 1.01899 1.21558 0.95580 0.95763 1.02223 1.20242 0.90661 0.96937 0.99707 0.89695 1.21875 1.00926 1.00803 0.96465 1.19521 0.95642 0.99458 0.94317 1.20834 0.93459 0.99633 0.98201 1.21183 0.94281 0.99717 0.97989 1.20327 0.97630 0.93948 0.92808 1.20871 0.87355 1.01882 1.01647 1.19087 0.95220 0.91058 0.95399 1.21276 0.91812 1.08667 1.34327 0.92502 1.25025 0.98581 0.95549 0.95249 1.69979 1.35425 1.12162 1.35687 0.86541 0.85725 0.77975 0.77795 1.19695 1.21003 1.20992 1.20968 0.90919 1.00420 1.00520 1.20757 0.91550 1.00824 0.92434 1.98319 1.71551 1.79511 1.55985 0.92458 0.92904 0.92797 0.91840 0.91936 0.92465 0.92485 0.92318 0.85801 0.85562 0.92000 0.91883 0.96367 0.96377 0.93006 0.85154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.67 37.16 0.36 -0.88 16 2 C -0.11 -1.10 5.14 -26.73 -0.14 -1.24 16 3 C -0.06 -0.64 2.46 -91.77 -0.23 -0.87 16 4 H 0.08 0.99 6.17 -51.93 -0.32 0.67 16 5 C -0.14 -1.48 8.76 37.16 0.33 -1.16 16 6 C -0.09 -1.23 4.78 -104.59 -0.50 -1.73 16 7 C -0.10 -1.43 8.76 -39.59 -0.35 -1.78 16 8 C -0.11 -1.81 9.70 -39.58 -0.38 -2.19 16 9 C -0.05 -0.84 5.13 -104.63 -0.54 -1.37 16 10 C -0.08 -1.63 5.28 -27.89 -0.15 -1.77 16 11 C 0.03 0.75 4.95 -27.88 -0.14 0.61 16 12 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 16 13 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 16 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 20 C -0.11 -1.86 9.49 -39.55 -0.38 -2.24 16 21 C -0.03 -0.45 6.31 -39.49 -0.25 -0.70 16 22 Cl -0.08 -1.14 27.01 -51.86 -1.40 -2.54 16 23 H 0.06 0.43 6.56 -51.93 -0.34 0.09 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.59 7.57 -51.93 -0.39 0.20 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.57 7.40 -51.93 -0.38 0.18 16 30 H 0.06 0.51 6.56 -51.93 -0.34 0.17 16 31 H 0.12 1.41 7.16 -52.49 -0.38 1.03 16 32 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 33 H 0.06 1.22 8.09 -51.93 -0.42 0.80 16 34 H 0.06 1.22 8.09 -51.93 -0.42 0.80 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.13 2.17 8.06 -52.48 -0.42 1.75 16 LS Contribution 324.78 15.07 4.89 4.89 Total: -1.00 -29.44 324.78 -9.48 -38.91 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -5.92 Total: -2.94 kcal Atomic # 6 Polarization: -25.95 SS G_CDS: -2.77 Total: -28.72 kcal Atomic # 7 Polarization: -26.85 SS G_CDS: 0.74 Total: -26.11 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -1.40 Total: -2.54 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.44 -9.48 -38.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260204996.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.544 kcal (2) G-P(sol) polarization free energy of solvation -29.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds